TCONS_00054921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054921
Unique NameTCONS_00054921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054921 ID=TCONS_00054921|Name=TCONS_00054921|organism=Clytia hemisphaerica|type=transcript|length=365bp
attctttgttaaaagtgttaaagaacctaaaatataacttttatgttcaa
atactaaaatcaatttttcgactatggtcagagcccttaaatattACTAT
ATTTGTCTTGTAGACTTTTCGGTGTACGATGAGGACGACAATGAAAACAC
GACGCTTCACTGTACGTTTGTCGGCAATGTGATATCACGAAGAAGTTACA
TCCATCTAGCGTTCTCTCCGCTGTTGAAAGTTGTTTATTATGTGGCCAAT
CAATTAAACACGAGATCCAATTTGATGAATCAAAATTTGTTGGACTAAAT
TTAATTGATCGTGCTGCACGTGTGTGTCAGCTGCACGCTACACGGGAACA
GATGCTTTCACGATN
Run BLAST on NCBI

transcript from alignment at scaffold_246:60658..61022

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054921 ID=TCONS_00054921|Name=TCONS_00054921|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at scaffold_246:60658..61022 (Clytia hemisphaerica)
NATCGTGAAAGCATCTGTTCCCGTGTAGCGTGCAGCTGACACACACGTGC
AGCACGATCAATTAAATTTAGTCCAACAAATTTTGATTCATCAAATTGGA
TCTCGTGTTTAATTGATTGGCCACATAATAAACAACTTTCAACAGCGGAG
AGAACGCTAGATGGATGTAACTTCTTCGTGATATCACATTGCCGACAAAC
GTACAGTGAAGCGTCGTGTTTTCATTGTCGTCCTCATCGTACACCGAAAA
GTCTACAAGACAAATATAGTaatatttaagggctctgaccatagtcgaaa
aattgattttagtatttgaacataaaagttatattttaggttctttaaca
cttttaacaaagaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034608XLOC_034608Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054921-exon-scaffold_246-1491911889:60658..61022TCONS_00054921-exon-scaffold_246-1491911889:60658..61022Clytia hemisphaericaexon
TCONS_00054921-exon-scaffold_246-1510915933:60658..61022TCONS_00054921-exon-scaffold_246-1510915933:60658..61022Clytia hemisphaericaexon
TCONS_00054921-exon-scaffold_246-1575043694:60658..61022TCONS_00054921-exon-scaffold_246-1575043694:60658..61022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:60658..61022 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.458246	0	0	0.586841	0.959737	1.46307	0	2.23925	1.00675	0.908313	0	0.984117	2.41866	1.91045	0	0.188283	0	0.311818	0.301795	1.14285	0	0.372117	0.737655	0.435836	0	0	1.12788	0.997611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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