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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056413 ID=TCONS_00056413|Name=TCONS_00056413|organism=Clytia hemisphaerica|type=transcript|length=552bp
ATTACCAAGTCCTATATTCACATCTAGtCGTTATTACGTGTTACCGCCCA
CGACGCCCGAAGGATCACCCgaacccaatgacgtcacatcTTCTATCATT
GATGACACAGAAAGtattttactGACCAATGAAGAAGACCAACCACCCAA
AAGACACATGAAGCAAATCAGTGTCGAACAAAAACTCTCTGACGAAGAGG
GAGTCACTCCTTTAGAAACTTCTGACATCACAGAAGTCAGTGATGTGGAA
GAAACCAAGGTTGTTACTATGGTGACCAAGGAAATGATAAATGGTAGCAA
AGATGTGGTTGtgacaaaatcttcaaatcctGAGAAGAGAGCTGGTAAAG
AAGAGACTACGGTTATCGAAAAGACAATTATCCTTGAGCCGAAAGACCAG
TCAAAGGAATCAGAAAATGAAGACAAAATAGAGACGAAAATCCAGACAGA
AACCTCTGTTACGTTAATTGATGAAGAATTCAAAACACAAGAAGGGGAGA
ATAATATGCTTTCCGAGAAGGAAGATGAAGAAATGAAACcaaataaagaa
ga Run BLAST on NCBI protein sequence of TCONS_00056413-protein >TCONS_00056413-protein ID=TCONS_00056413-protein|Name=TCONS_00056413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
LPSPIFTSSRYYVLPPTTPEGSPEPNDVTSSIIDDTESILLTNEEDQPPK
RHMKQISVEQKLSDEEGVTPLETSDITEVSDVEETKVVTMVTKEMINGSK
DVVVTKSSNPEKRAGKEETTVIEKTIILEPKDQSKESENEDKIETKIQTE
TSVTLIDEEFKTQEGENNMLSEKEDEEMKPNKE Run BLAST on NCBI transcript from alignment at scaffold_276:113877..118738+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056413 ID=TCONS_00056413|Name=TCONS_00056413|organism=Clytia hemisphaerica|type=transcript|length=4862bp|location=Sequence derived from alignment at scaffold_276:113877..118738+ (Clytia hemisphaerica)
ATTACCAAGTCCTATATTCACATCTAGGTAAGCCAATCTGCTCAATTTGA
TAGCCCTATCGTAATGGAATGATACGAGTTTGTAAAACAGcaggttgttc
ttattttgttttagGGTTTCGCCAAAATCGAGGCTCAAGGTCTTATATGG
TCAATCTTATAAAAAGCGAAGAAGTAAAACTTCGCCCACCTCGAAAATTT
CGTCCACCTTTGAAATCGCCCGCTAATTCGAAAGAGTTGCCTTGTTGTCA
TGACAGTGGAGTGTTGTCGTTTTTACTGTTTGATACTTACCTAAGTTTAA
AGGTCAAGAGGCTTCTCTTAGCAAATCGCTTTTCTGTCAATCACTCTTTT
CAGGAGTTTTAACTAGTACAGACAAATTTTCTCCGTCAAATGTTGTGATT
TCTCATTTCGCTCTCTGTCAGAAAAGTGTTACTGTTCTGGAGAATTTCTC
CCAACCAGCTATCTGCACCGGAGTTTCAGAAAATCTACTCCAGATATTTC
TAACGATATGTAATGTAAAGTATTTTGTCAGAGGGAGTACAcgttatttt
ttaagaaatacacttttaagaaacatgaggctcagaatgcctaaaaacta
agaagaaacatgctgaggctgagaatgagaaaataacatttttttaattc
ggtttttaaAAAAACCTCCAATccaaacaaatgtttttttttctttgcat
gaaaaataggctgattatgtcaaaaagtttagaaacgtgtaagaaacatt
taaggctcaaaagaccgatttcttaagaaacattgaggctgcttggtaaa
actagtttcttaaaaaaacgtgtacgaaGAAAGATGTAATCTTTTCCGTT
CTGTTGTATCTTATGTCACAGAGGGCGGCTTGTTCAAAAACCTACATGGA
AAAGGGGATTCGAATTTCACACATATTCTCTATGAAATTTTCCCCGAATA
CATCTCGATTCTATCTATGACTTTAAATCTATGATTGCCCCTCAGGTCTT
GAGTTCGGCTAGCAACTATATGAGGAACTAAATATTGCTCTGCATTTAGG
GTTGTTATAGTTTTAGGCTATCATTTATAAGGTTAAGGTTACTAGCTCAT
CATACCACAgccaaatttttcttataaaataagtGATGGGTTACATTTCG
TATTGAACTAGGTGATAAAAATGCTGAAATTTAATACCTCCTTTTCACAT
CACTTGATATAGTTTTTAgttcttttgaaaatgttacTTTTACATTATAT
TTTGTTTAAACACTTGATAAATTCTTATGTTGCCTGGCGTCTAAGGGAAA
TTGTAGTATTCTGGACTTCaatgattttaattaaaaaGGCAGGTTCTCAT
TATTGTTTACCTTCCTtgctttgttaattttttataattttgactgGATT
TCTAAAGGGCTACAAACactggcaatatattgaaaaggtgtccgcaatat
attgtcagctcgatttgcaatattccaacaataaagggggattgtttaca
aagataaaattcctttttataataaaatacCTGCAATTTACTTAGTACAT
GACGGTCTGCAAACCATATTGTCAGATATTGttcatcaatatattgtgta
gtcctTAACATTGATAGACTATTCGGATAATTGTTTGTATCAATTAAAAC
ATTATGATATAATTCCAAAAGCCATAATTTCCTAcccccgaaaaaaaaaa
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGGGGGTT
TGGTTGGGGGTTTCAAAATTGTTAACCAAATAATTTTATCATCTATTTAT
CCCAGGGCTCACGAGCTCGGTTAATAATTTATATATATAGAGTGGTTTTG
TCTTTAGGGGGGGGGTTTGATTATATAGCGGGGGTTAAACCACCCAGGAA
ACTATGATAGCACTTTGTAACATTTTACTGGGCAGGATTGAGTGTCATTT
AAGATGTACACAAAACTGGTTAACCCCTGGATTGAAGGCTGCATATTTTG
AGCAAAAGCTGTGCAAAAAGCGATAGGGTATCATTAGAGAGAAAAATGTA
CTTCagcttaaaatatttgaaatatgtTTTGGCATTATAACTTaaagatt
gggcttttccagaaatagtccgtgctcCCCCTGTAGAGGATATCGGATAT
TCAGAGGggttaaagattttgtttaaaagtggatatccagggggattaaa
tatctacaagggagcggatatccaaggggtaaagtgtcttttcaagtaaa
gaatatataagagaggatatccaggggattaagcatatttttaagagtgg
atatggTCTTATAAATAAAGTAGGATAGGGGGtttgatacttcgaaaaat
caatatcctcaacagtgggggtaaaatctttttctggaaaagcccatttg
tTTTGCATTGTTGTGACCAATTCGtccaaatatttttgtcaactcATTGG
GCCAGATCATTATCATGTATTGAAACTCAAGACTTTGTTAAAGATCTGTT
TTGTTGTAAACAAAAATCACCCTGGGAAACTAGAAACAAGTGTCATGTTA
AAACATCACCAAAATGTACTTCAGACAgttttatttgtttatgttgCATA
AAGTTTTTGTGAGATCACACTGCTTGAATTattataattttctttaaaaa
aggttACCCAATCTcccttaaagtttgaaagcAATGAAATATTCAAACAA
ATCATTAAAATGTTAAACTTTCAGGGATTTTGTtacattttaaaagaatt
ttaagataaaatttcaaatgcaTAAATTAGCATAATTAAATGATTTAGCC
AATCAATTTACTCCCTTTAAATGTTTCTTTCTTCCTAAAGAATTGTCACA
AAAGCACCAAAAAGTGACAGTTTCTTTTCCATTGTTACTAAATAAAAACT
GACAAAATAAATAATTCTCTATGGCAACCAGACTGTTTCTGGTAAACAAa
atatttagaggattttatcgatctttcggtGAGGAAGGTTTTATTGGATT
TAATTTACtcttttttggaatttgtgTTTTTAAGATCTTTTTAAATTCGG
TTGAAATTGTAGGTAAGCAAAACGCAGATTTGTTGCttcaactctttttt
tgcatttttattcAAGTATTTACAACAATAAGTTTCGTTTAACTAGGACA
ATCTTGAgaatgtttttagaattttatctAAAATGTAAGTCAAAACCAAA
TTTGGGTAACCCCCTTTGATAAAGTTCAAAAAGAGAActagaatttttga
aataaggGCTTGAAGGTCAATAAGACATACGTCACAACTATATTGGGTTT
TGCGGTGAAGATATTTGCTTTCCCCGGAGATTCTTCCTAACATTTAGTTT
CAAAATTAAACTTACAATTTCATTTGTTCTACTGTTATAGCCCTCTTATT
GAAGGGGATTGAAAATTTGCGTATAGGTCCTTCTATTAGAGGAAATAATG
GAAGGAATTTCCTGAAAGAAGACTTTTGCATCGAGATCTGCATATTGCGA
agagatacacgttttttacaagaacatccttatcgaatgttcttattttt
ttgagtttcaaacctttaaatgttctcaacatgttcttattttcacaaat
ttgtgagtatttcggtcaattttcataagaaatcgggtgtttcggagtcc
ccaaagccttaaaatgtttttgctcTTAcgaagtttgttcttattaaaaa
atgcgTATTCAATAAAAATTTAGTTTCGCGTATGAAACTTTAACTGCTAA
ACTAAagattaatattttcatttttacagtCGTTATTACGTGTTACCGCC
CACGACGCCCGAAGGATCACCCgaacccaatgacgtcacatcTTCTATCA
TTGATGACACAGAAAGGTATTCccagtcttttgatttctttagaaaaaaa
tactcCTGTATAACACAACTTCAGAATCATGAAATTTGTTGGCCCTATCA
TCACAGTTTTCAGCACTTATGCCAGGACCTAGATGGATGGGGTTGTGAAC
GACTTTACGTCAATTGCATAAGCTTACTCACATATACATAGTTAGACATT
ATTCATCCGAAGTACAATCAAGCTTAGTACAACTGCTGCGTTAAGGTCCA
TAACGAGAAAATTTCTTGAAGCGGCTTGAATGATGGAGAATTTTCAAGTA
TCTAATacattatttcatttttagtattttactGACCAATGAAGAAGACC
AACCACCCAAAAGACACATGAAGCAAATCAGTGTCGAACAAAAACTCTCT
GACGAAGAGGGAGTCACTCCTTTAGAAACTTCTGACATCACAGAAGTCAG
TGATGTGGAAGAAACCAAGGTTGTTACTATGGTGACCAAGGAAATGATAA
ATGGTAGCAAAGATGTGGTTGtgacaaaatcttcaaatcctGAGAAGAGA
GCTGGTAAAGAAGAGACTACGGTTATCGAAAAGACAATTATCCTTGAGCC
GAAAGACCAGTCAAAGGAATCAGAAAATGAAGACAAAATAGAGACGAAAA
TCCAGACAGAAACCTCTGTTACGTTAATTGATGAAGAATTCAAAACACAA
GAAGGGGAGAATAATATGCTTTCCGAGAAGGAAGATGAAGAAATGAAACc
aaataaagaaga Coding sequence (CDS) from alignment at scaffold_276:113877..118738+ >TCONS_00056413 ID=TCONS_00056413|Name=TCONS_00056413|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_276:113877..118738+ (Clytia hemisphaerica)
TTACCAAGTCCTATATTCACATCTAGtCGTTATTACGTGTTACCGCCCAC
GACGCCCGAAGGATCACCCgaacccaatgacgtcacatcTTCTATCATTG
ATGACACAGAAAGtattttactGACCAATGAAGAAGACCAACCACCCAAA
AGACACATGAAGCAAATCAGTGTCGAACAAAAACTCTCTGACGAAGAGGG
AGTCACTCCTTTAGAAACTTCTGACATCACAGAAGTCAGTGATGTGGAAG
AAACCAAGGTTGTTACTATGGTGACCAAGGAAATGATAAATGGTAGCAAA
GATGTGGTTGtgacaaaatcttcaaatcctGAGAAGAGAGCTGGTAAAGA
AGAGACTACGGTTATCGAAAAGACAATTATCCTTGAGCCGAAAGACCAGT
CAAAGGAATCAGAAAATGAAGACAAAATAGAGACGAAAATCCAGACAGAA
ACCTCTGTTACGTTAATTGATGAAGAATTCAAAACACAAGAAGGGGAGAA
TAATATGCTTTCCGAGAAGGAAGATGAAGAAATGAAACcaaataaagaaT
TACCAAGTCCTATATTCACATCTAGtCGTTATTACGTGTTACCGCCCACG
ACGCCCGAAGGATCACCCgaacccaatgacgtcacatcTTCTATCATTGA
TGACACAGAAAGtattttactGACCAATGAAGAAGACCAACCACCCAAAA
GACACATGAAGCAAATCAGTGTCGAACAAAAACTCTCTGACGAAGAGGGA
GTCACTCCTTTAGAAACTTCTGACATCACAGAAGTCAGTGATGTGGAAGA
AACCAAGGTTGTTACTATGGTGACCAAGGAAATGATAAATGGTAGCAAAG
ATGTGGTTGtgacaaaatcttcaaatcctGAGAAGAGAGCTGGTAAAGAA
GAGACTACGGTTATCGAAAAGACAATTATCCTTGAGCCGAAAGACCAGTC
AAAGGAATCAGAAAATGAAGACAAAATAGAGACGAAAATCCAGACAGAAA
CCTCTGTTACGTTAATTGATGAAGAATTCAAAACACAAGAAGGGGAGAAT
AATATGCTTTCCGAGAAGGAAGATGAAGAAATGAAACcaaataaagaaTT
ACCAAGTCCTATATTCACATCTAGtCGTTATTACGTGTTACCGCCCACGA
CGCCCGAAGGATCACCCgaacccaatgacgtcacatcTTCTATCATTGAT
GACACAGAAAGtattttactGACCAATGAAGAAGACCAACCACCCAAAAG
ACACATGAAGCAAATCAGTGTCGAACAAAAACTCTCTGACGAAGAGGGAG
TCACTCCTTTAGAAACTTCTGACATCACAGAAGTCAGTGATGTGGAAGAA
ACCAAGGTTGTTACTATGGTGACCAAGGAAATGATAAATGGTAGCAAAGA
TGTGGTTGtgacaaaatcttcaaatcctGAGAAGAGAGCTGGTAAAGAAG
AGACTACGGTTATCGAAAAGACAATTATCCTTGAGCCGAAAGACCAGTCA
AAGGAATCAGAAAATGAAGACAAAATAGAGACGAAAATCCAGACAGAAAC
CTCTGTTACGTTAATTGATGAAGAATTCAAAACACAAGAAGGGGAGAATA
ATATGCTTTCCGAGAAGGAAGATGAAGAAATGAAACcaaataaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056413-exon-scaffold_276-1491911889:113877..113903 | TCONS_00056413-exon-scaffold_276-1491911889:113877..113903 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1510915933:113877..113903 | TCONS_00056413-exon-scaffold_276-1510915933:113877..113903 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1575043694:113877..113903 | TCONS_00056413-exon-scaffold_276-1575043694:113877..113903 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1491911889:117906..117992 | TCONS_00056413-exon-scaffold_276-1491911889:117906..117992 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1510915933:117906..117992 | TCONS_00056413-exon-scaffold_276-1510915933:117906..117992 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1575043694:117906..117992 | TCONS_00056413-exon-scaffold_276-1575043694:117906..117992 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1491911889:118301..118738 | TCONS_00056413-exon-scaffold_276-1491911889:118301..118738 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1510915933:118301..118738 | TCONS_00056413-exon-scaffold_276-1510915933:118301..118738 | Clytia hemisphaerica | exon |
| TCONS_00056413-exon-scaffold_276-1575043694:118301..118738 | TCONS_00056413-exon-scaffold_276-1575043694:118301..118738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:113877..118738 + |
Blast
The following BLAST results are available for this feature:
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