TCONS_00056713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056713
Unique NameTCONS_00056713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056713 ID=TCONS_00056713|Name=TCONS_00056713|organism=Clytia hemisphaerica|type=transcript|length=853bp
GTGgttattaaaatttttcatcagCACAGCAAATCATTTTACATTATACA
ATTGTACTGAATTGGCTGATACAATGtcaccaaaaaaagtataaatatcT
TGGTCATTAGTAAACTTAAAGAgagtgaaaaagaattttccctGTACCTC
AACCAGTCGATTTCTAAAAACActagtttttattttcacttgaATATCAA
TATTTTGCTTGGCATATGCAAATAATGTCATTGAGTTCATGTTTAACCAA
AAAATTGATACTGGTATGGATATTGAATTGGAATTGCCATTGGAATTCTC
ACACATTGACCAGAATGAGGCAATACTGGTGGTATCATAGCATTAGGTAT
GatgttgttattgttgtttaCATGTTGCATGTTTGAATGTTGTGAGTTTG
CATGTTGCAAGTTTGCATGTTGCATGTTTGCATGTTGCATGTTTGCATGT
TGCATGTTTGCATGTTGCATGTTTGCATGTTGCATGTTTACTTGTTGCAT
GTTTGCATGTTGCATGTTTGCATGTTGCATGTTTACTTGTTGCATGTTTG
AATGTTGTGAGTTTGCATGTTGCATGTGTGCATGTTGCGGGTTTCCAAGC
AGTTGACCAAGGTTTTGCACATGAGCATGCAAAAGCACTTGTTGAAGCTC
GATTTGTTGCTTCAActttacattttctttttttatttgctttaatTTTC
TTACCGCTTTAATTTTGTGTCGGGCATCATTGAGTGGTAAGCCGTTTGTC
GGGAGAGCAACCTCATCATCGCTGTCAAGAAAAGCATCATCCTGCCCCAC
TTCTGACAGCTCTGGAAGAAGGTTGCTTCTTTTGGACATGTTTATCTTAA
TCT
Run BLAST on NCBI

protein sequence of TCONS_00056713-protein

>TCONS_00056713-protein ID=TCONS_00056713-protein|Name=TCONS_00056713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
IKINMSKRSNLLPELSEVGQDDAFLDSDDEVALPTNGLPLNDARHKIKAV
RKLKQIKKENVKLKQQIELQQVLLHAHVQNLGQLLGNPQHAHMQHANSQH
SNMQQVNMQHANMQHANMQQVNMQHANMQHANMQHANMQHANMQHANLQH
ANSQHSNMQHVNNNNNIIPNAMIPPVLPHSGQCVRIPMAIPIQYPYQYQF
FG
Run BLAST on NCBI

transcript from alignment at scaffold_281:246219..247071

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056713 ID=TCONS_00056713|Name=TCONS_00056713|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at scaffold_281:246219..247071 (Clytia hemisphaerica)
AGATTAAGATAAACATGTCCAAAAGAAGCAACCTTCTTCCAGAGCTGTCA
GAAGTGGGGCAGGATGATGCTTTTCTTGACAGCGATGATGAGGTTGCTCT
CCCGACAAACGGCTTACCACTCAATGATGCCCGACACAAAATTAAAGCGG
TAAGAAAattaaagcaaataaaaaaagaaaatgtaaagTTGAAGCAACAA
ATCGAGCTTCAACAAGTGCTTTTGCATGCTCATGTGCAAAACCTTGGTCA
ACTGCTTGGAAACCCGCAACATGCACACATGCAACATGCAAACTCACAAC
ATTCAAACATGCAACAAGTAAACATGCAACATGCAAACATGCAACATGCA
AACATGCAACAAGTAAACATGCAACATGCAAACATGCAACATGCAAACAT
GCAACATGCAAACATGCAACATGCAAACATGCAACATGCAAACTTGCAAC
ATGCAAACTCACAACATTCAAACATGCAACATGtaaacaacaataacaac
atCATACCTAATGCTATGATACCACCAGTATTGCCTCATTCTGGTCAATG
TGTGAGAATTCCAATGGCAATTCCAATTCAATATCCATACCAGTATCAAT
TTTTTGGTTAAACATGAACTCAATGACATTATTTGCATATGCCAAGCAAA
ATATTGATATtcaagtgaaaataaaaactagTGTTTTTAGAAATCGACTG
GTTGAGGTACagggaaaattctttttcactcTCTTTAAGTTTACTAATGA
CCAAgatatttatactttttttggtgaCATTGTATCAGCCAATTCAGTAC
AATTGTATAATGTAAAATGATTTGCTGTGctgatgaaaaattttaataac
CAC

Coding sequence (CDS) from alignment at scaffold_281:246219..247071

>TCONS_00056713 ID=TCONS_00056713|Name=TCONS_00056713|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_281:246219..247071 (Clytia hemisphaerica)
ATTAAGATAAACATGTCCAAAAGAAGCAACCTTCTTCCAGAGCTGTCAGA
AGTGGGGCAGGATGATGCTTTTCTTGACAGCGATGATGAGGTTGCTCTCC
CGACAAACGGCTTACCACTCAATGATGCCCGACACAAAATTAAAGCGGTA
AGAAAattaaagcaaataaaaaaagaaaatgtaaagTTGAAGCAACAAAT
CGAGCTTCAACAAGTGCTTTTGCATGCTCATGTGCAAAACCTTGGTCAAC
TGCTTGGAAACCCGCAACATGCACACATGCAACATGCAAACTCACAACAT
TCAAACATGCAACAAGTAAACATGCAACATGCAAACATGCAACATGCAAA
CATGCAACAAGTAAACATGCAACATGCAAACATGCAACATGCAAACATGC
AACATGCAAACATGCAACATGCAAACATGCAACATGCAAACTTGCAACAT
GCAAACTCACAACATTCAAACATGCAACATGtaaacaacaataacaacat
CATACCTAATGCTATGATACCACCAGTATTGCCTCATTCTGGTCAATGTG
TGAGAATTCCAATGGCAATTCCAATTCAATATCCATACCAGTATCAATTT
TTTGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035730XLOC_035730Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056713-proteinTCONS_00056713-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056713-exon-scaffold_281-1491911889:246219..247071TCONS_00056713-exon-scaffold_281-1491911889:246219..247071Clytia hemisphaericaexon
TCONS_00056713-exon-scaffold_281-1510915933:246219..247071TCONS_00056713-exon-scaffold_281-1510915933:246219..247071Clytia hemisphaericaexon
TCONS_00056713-exon-scaffold_281-1575043694:246219..247071TCONS_00056713-exon-scaffold_281-1575043694:246219..247071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:246219..247071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0742915	0.0587061	0	0	0	0.0575024	0	0.0733788	0.0732768	0.152197	0.0312817	0	0	0	0	0	0	0	0	0	0.118295	0.158363	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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