TCONS_00058825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058825
Unique NameTCONS_00058825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058825 ID=TCONS_00058825|Name=TCONS_00058825|organism=Clytia hemisphaerica|type=transcript|length=1709bp
gttaaaaacaaaCGTTTTTATTGAGATAAGATGGGACCTTTTTCTGATCA
ATCACTCAGTCAATCAAAAATCCTTGGAAGGAAGCTGCTCATTACTTggt
caatttgaatttttgcaaacaaaagatttttatcaTTCGACACTTGAAAG
TGTAATTCCTGTTATTCAAACAACTCAACATACAAGATGAATGTGTTAAA
cttgaaagatattttatccTTCAAAATACGATTCCGATGTGATAGTTGGA
CTGACCAATGGAATCGCCTCATTATGTGCAAAATATTCCTAATCATCGCC
CTCGTCATTGGTATCGACTACTTTCAAGATGAAATCACATGCATGATCTC
TGAAAATGCTGCAATCGATGGCGCTTTTGTTCAAAGTGCATGTTGGATCA
TGGGGTTTTATGTCTATCCAGATTTAAGTAACCAATGGAAACACGTGGGT
TACCATGGCGTCCCTAAAGATCTCAGCATGGACGGAATCGATAAAGATGG
TAGCTTGTGTCCGACTATTACCAAATATGGAACCCTGGATCCTAATTGTC
GCCCAATGAGAAAAGAGTTCTATTTGCAGTACCAGTGGTATCCTTTCTTC
GTTGGATCTCTGGCGTTACTCTACTATATTCCCTACCTGGTTTATAGGTT
CGCCAACAAAGATATTATCTCCCTAAGGGAAGTCATTGAGGAAGGCAAAC
ACTCCAAAGAGAGCATTCTATCCAGTCATTTTGATCGACACATGAATTCT
AAGAATGAAATGAGAATTCGGGTTGCTGGCATTTTCTTAGTCAAAATCTT
ATATCTTGGCGTCAATTTCTTTGCCTTTAGCTTTATCGATTCCTCAATGA
ACGGCCGATTCGTCAAATATGGTCTCTCGTACCTCCGTTGGAATAGCCTA
CCCAACTCTGTAGCCCATGATCTACAACAACGTCATCGCTCAAAGCCTAG
TGACCAACTTCTTCCACCAATGGGAATCTGCGATATCGATGAATCGTCAC
GTGACATAAGAAACACGCTCATTAATCGGCACCGGTTTATTTGTGAGTTA
TCTCAAAATATCTTATACCAATATTGTTTCCTAATCATCTGGTTCCTCAT
CGTGGCGAGCATCGTCATCTCAATCTACGGTATCGCACAGCAGGTGTATT
ACTGCGCCAAAGgattgtgggtcctcaaaatgTCGCAAACACCAGTCTAC
CGAAGCCGTNACAGCAGGTGTATTACTGCGCCAAAGgattgtgggtcctc
aaaatgTCGCAAACGCCAGTCTACCGAAGCCGTGATATTTCACTACGCGA
ACATCAATATTTGGAAGTCATTCGCGATATCGACCCACTTCTGTATCAAG
ATATGGAAAGTGATCTTTCGAATGAATCAAATCTGAATAATGGTGAGGCG
TTTAATAAGGCGTTGGCACCCCAACCCAACGGCGGCCCTCCTGAACCTTT
TACAATGAAGCTGCAACAGTTGAACGGTGAACCTTACCATAGAATGCAAC
CTGTTTGAAAAGCAATGACTTCTCTCCTCGACTTCCTACAGAAGTTAGGa
actaaaaaaactgaaaattcatgtaaaaaagatCAAAAGACTTCAACTAC
TTCCTTTAATTTACTCTAGAAACCCTTGTAAATATTACTAGATTGTTTAG
TATTCAATATAGGCATTTGTAGATCGGTTTTGAACTTAAAGTTCTAAATT
GAAGAACTG
Run BLAST on NCBI

protein sequence of TCONS_00058825-protein

>TCONS_00058825-protein ID=TCONS_00058825-protein|Name=TCONS_00058825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MNVLNLKDILSFKIRFRCDSWTDQWNRLIMCKIFLIIALVIGIDYFQDEI
TCMISENAAIDGAFVQSACWIMGFYVYPDLSNQWKHVGYHGVPKDLSMDG
IDKDGSLCPTITKYGTLDPNCRPMRKEFYLQYQWYPFFVGSLALLYYIPY
LVYRFANKDIISLREVIEEGKHSKESILSSHFDRHMNSKNEMRIRVAGIF
LVKILYLGVNFFAFSFIDSSMNGRFVKYGLSYLRWNSLPNSVAHDLQQRH
RSKPSDQLLPPMGICDIDESSRDIRNTLINRHRFICELSQNILYQYCFLI
IWFLIVASIVISIYGIAQQVYYCAKGLWVLKMSQTPVYRSRXSRCITAPK
DCGSSKCRKRQSTEAVIFHYANINIWKSFAISTHFCIKIWKVIFRMNQI
Run BLAST on NCBI

transcript from alignment at scaffold_314:268903..271000+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058825 ID=TCONS_00058825|Name=TCONS_00058825|organism=Clytia hemisphaerica|type=transcript|length=2098bp|location=Sequence derived from alignment at scaffold_314:268903..271000+ (Clytia hemisphaerica)
gttaaaaacaaaCGTTTTTATTGAGATAAGATGGGACCTTTTTCTGATCA
ATCACTCAGTCAATCAAAAATCCTTGGAAGGAAGCTGCTCATTACTTggt
caatttgaatttttgcaaacaaaagatttttatcaTTCGACACTTGAAAG
TAAGTACCTTTTGCCCTCTTAAAAGATTTTACATGTGTCCAGAGCCCAAA
ACACATCTTTCACTTAGTGGACttgatagatagagtcgatGTTTAACGTG
GATAgtccagtaatctaggacttttaggtagtctttcgattgttttcacg
gagtccacggccagccggctaGGCTTTCTTTGAattgaacggaacattgg
aaggagcgggaaTTCGAGCCGCCCTGGTTTGAAAGGCTGACGTCTTCGat
cacttggccatcgctcctaCTTGAAATTCTTTTGAGTGAATTGAGGCAGG
GTAATGCATGTTCTGCATGTAGAGTGAGTATTGTACTTTACTACATTCGT
TCATGAGTAGTATTTTTAATATTGACCATTCTTTCCAGGTGTAATTCCTG
TTATTCAAACAACTCAACATACAAGATGAATGTGTTAAActtgaaagata
ttttatccTTCAAAATACGATTCCGATGTGATAGTTGGACTGACCAATGG
AATCGCCTCATTATGTGCAAAATATTCCTAATCATCGCCCTCGTCATTGG
TATCGACTACTTTCAAGATGAAATCACATGCATGATCTCTGAAAATGCTG
CAATCGATGGCGCTTTTGTTCAAAGTGCATGTTGGATCATGGGGTTTTAT
GTCTATCCAGATTTAAGTAACCAATGGAAACACGTGGGTTACCATGGCGT
CCCTAAAGATCTCAGCATGGACGGAATCGATAAAGATGGTAGCTTGTGTC
CGACTATTACCAAATATGGAACCCTGGATCCTAATTGTCGCCCAATGAGA
AAAGAGTTCTATTTGCAGTACCAGTGGTATCCTTTCTTCGTTGGATCTCT
GGCGTTACTCTACTATATTCCCTACCTGGTTTATAGGTTCGCCAACAAAG
ATATTATCTCCCTAAGGGAAGTCATTGAGGAAGGCAAACACTCCAAAGAG
AGCATTCTATCCAGTCATTTTGATCGACACATGAATTCTAAGAATGAAAT
GAGAATTCGGGTTGCTGGCATTTTCTTAGTCAAAATCTTATATCTTGGCG
TCAATTTCTTTGCCTTTAGCTTTATCGATTCCTCAATGAACGGCCGATTC
GTCAAATATGGTCTCTCGTACCTCCGTTGGAATAGCCTACCCAACTCTGT
AGCCCATGATCTACAACAACGTCATCGCTCAAAGCCTAGTGACCAACTTC
TTCCACCAATGGGAATCTGCGATATCGATGAATCGTCACGTGACATAAGA
AACACGCTCATTAATCGGCACCGGTTTATTTGTGAGTTATCTCAAAATAT
CTTATACCAATATTGTTTCCTAATCATCTGGTTCCTCATCGTGGCGAGCA
TCGTCATCTCAATCTACGGTATCGCACAGCAGGTGTATTACTGCGCCAAA
GgattgtgggtcctcaaaatgTCGCAAACACCAGTCTACCGAAGCCGTNA
CAGCAGGTGTATTACTGCGCCAAAGgattgtgggtcctcaaaatgTCGCA
AACGCCAGTCTACCGAAGCCGTGATATTTCACTACGCGAACATCAATATT
TGGAAGTCATTCGCGATATCGACCCACTTCTGTATCAAGATATGGAAAGT
GATCTTTCGAATGAATCAAATCTGAATAATGGTGAGGCGTTTAATAAGGC
GTTGGCACCCCAACCCAACGGCGGCCCTCCTGAACCTTTTACAATGAAGC
TGCAACAGTTGAACGGTGAACCTTACCATAGAATGCAACCTGTTTGAAAA
GCAATGACTTCTCTCCTCGACTTCCTACAGAAGTTAGGaactaaaaaaac
tgaaaattcatgtaaaaaagatCAAAAGACTTCAACTACTTCCTTTAATT
TACTCTAGAAACCCTTGTAAATATTACTAGATTGTTTAGTATTCAATATA
GGCATTTGTAGATCGGTTTTGAACTTAAAGTTCTAAATTGAAGAACTG

Coding sequence (CDS) from alignment at scaffold_314:268903..271000+

>TCONS_00058825 ID=TCONS_00058825|Name=TCONS_00058825|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_314:268903..271000+ (Clytia hemisphaerica)
ATGAATGTGTTAAActtgaaagatattttatccTTCAAAATACGATTCCG
ATGTGATAGTTGGACTGACCAATGGAATCGCCTCATTATGTGCAAAATAT
TCCTAATCATCGCCCTCGTCATTGGTATCGACTACTTTCAAGATGAAATC
ACATGCATGATCTCTGAAAATGCTGCAATCGATGGCGCTTTTGTTCAAAG
TGCATGTTGGATCATGGGGTTTTATGTCTATCCAGATTTAAGTAACCAAT
GGAAACACGTGGGTTACCATGGCGTCCCTAAAGATCTCAGCATGGACGGA
ATCGATAAAGATGGTAGCTTGTGTCCGACTATTACCAAATATGGAACCCT
GGATCCTAATTGTCGCCCAATGAGAAAAGAGTTCTATTTGCAGTACCAGT
GGTATCCTTTCTTCGTTGGATCTCTGGCGTTACTCTACTATATTCCCTAC
CTGGTTTATAGGTTCGCCAACAAAGATATTATCTCCCTAAGGGAAGTCAT
TGAGGAAGGCAAACACTCCAAAGAGAGCATTCTATCCAGTCATTTTGATC
GACACATGAATTCTAAGAATGAAATGAGAATTCGGGTTGCTGGCATTTTC
TTAGTCAAAATCTTATATCTTGGCGTCAATTTCTTTGCCTTTAGCTTTAT
CGATTCCTCAATGAACGGCCGATTCGTCAAATATGGTCTCTCGTACCTCC
GTTGGAATAGCCTACCCAACTCTGTAGCCCATGATCTACAACAACGTCAT
CGCTCAAAGCCTAGTGACCAACTTCTTCCACCAATGGGAATCTGCGATAT
CGATGAATCGTCACGTGACATAAGAAACACGCTCATTAATCGGCACCGGT
TTATTTGTGAGTTATCTCAAAATATCTTATACCAATATTGTTTCCTAATC
ATCTGGTTCCTCATCGTGGCGAGCATCGTCATCTCAATCTACGGTATCGC
ACAGCAGGTGTATTACTGCGCCAAAGgattgtgggtcctcaaaatgTCGC
AAACACCAGTCTACCGAAGCCGTNACAGCAGGTGTATTACTGCGCCAAAG
gattgtgggtcctcaaaatgTCGCAAACGCCAGTCTACCGAAGCCGTGAT
ATTTCACTACGCGAACATCAATATTTGGAAGTCATTCGCGATATCGACCC
ACTTCTGTATCAAGATATGGAAAGTGATCTTTCGAATGAATCAAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037063XLOC_037063Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058825-proteinTCONS_00058825-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058825-exon-scaffold_314-1491911889:268903..269051TCONS_00058825-exon-scaffold_314-1491911889:268903..269051Clytia hemisphaericaexon
TCONS_00058825-exon-scaffold_314-1510915933:268903..269051TCONS_00058825-exon-scaffold_314-1510915933:268903..269051Clytia hemisphaericaexon
TCONS_00058825-exon-scaffold_314-1575043694:268903..269051TCONS_00058825-exon-scaffold_314-1575043694:268903..269051Clytia hemisphaericaexon
TCONS_00058825-exon-scaffold_314-1491911889:269441..271000TCONS_00058825-exon-scaffold_314-1491911889:269441..271000Clytia hemisphaericaexon
TCONS_00058825-exon-scaffold_314-1510915933:269441..271000TCONS_00058825-exon-scaffold_314-1510915933:269441..271000Clytia hemisphaericaexon
TCONS_00058825-exon-scaffold_314-1575043694:269441..271000TCONS_00058825-exon-scaffold_314-1575043694:269441..271000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:268903..271000 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0236518	0	0	0	0	0	0	0	0	0.0246877	0	0	0.267411	0.130687	0.161163	0.273842	0.834501	1.25571	0.980554	0.815602	3.20151	3.64742	1.81695	2.49014	2.13309	2.17569	1.29725	1.73058	0.0525034	0.0802389
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000990Innexin
Vocabulary: Cellular Component
TermDefinition
GO:0005921gap junction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005921 gap junction
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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