TCONS_00060211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060211
Unique NameTCONS_00060211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060211 ID=TCONS_00060211|Name=TCONS_00060211|organism=Clytia hemisphaerica|type=transcript|length=887bp
CACAACCTACGACCTATCCCCACTCCCGCCACTCGCACACACAAAATGAA
GATTTGGACCAAATAATAAACAACGGCGCCACACCCGGCCGTAAGTAACG
TACAAAATGAAGACTTGGTCATATTTTGACCAAATAAGACTTTTAATGAA
AATTTTGTTCTTTAATGCTTGCGATCAATCTAGTGTTTGCTCTTCGGACA
AGTTGACTCCCTGTAAAAGCGTAAAAGGGTCTAGTACCAAGTCTAAAAAA
TTTACTGTATTTGGTGTATTCTTTTTCTAAACCCTTTTACAATCTAGCAA
TCACGTCAACTAGTCGGTTTTCCCAAACGAAGAAGGAACTCATTTTTACA
CGTCGAAATATAGAGAATATGGAGCAAGTAGAAAAGAAATTGACAGACCC
GGAAGAATCAACAAAAGATACACCAGATGAATCAACAAAAGATACACCAG
ATGAATCAACAAAAGATACACCAGAAGAGAACGAACAAGACCTGACATCC
ATCCCTTCCAGTCAACCCAAATCTACATCAGAACCAACTGGCAGAAGCAA
CAACTACTACCAAGatcATGTAAGTGGGTATGTTCAAAAGGTCACCAAAA
CCAACTATTCTGCCGCTAAAAACTGTAATTATTTCAATGCTGTTTTGCAG
ACAGACACAAATACCTTCAgtgcgttgttactaaaagagaggtaacgagt
ggtaacgagtggtaacgatgtggtaacgagtggtaacgatgtggtaacga
gtggtaacgaggtggtaacgagtggtaacgagtggtaaccagttgaaaac
ggtggccctaagtctccaaatttgaatttctcgattctggtgtttttgca
acagatgctgatggctcttgaggttctgcagaaggac
Run BLAST on NCBI

protein sequence of TCONS_00060211-protein

>TCONS_00060211-protein ID=TCONS_00060211-protein|Name=TCONS_00060211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MEQVEKKLTDPEESTKDTPDESTKDTPDESTKDTPEENEQDLTSIPSSQP
KSTSEPTGRSNNYYQDHVSGYVQKVTKTNYSAAKNCNYFNAVLQTDTNTF
SALLLKER
Run BLAST on NCBI

transcript from alignment at scaffold_337:99150..101453-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060211 ID=TCONS_00060211|Name=TCONS_00060211|organism=Clytia hemisphaerica|type=transcript|length=2304bp|location=Sequence derived from alignment at scaffold_337:99150..101453- (Clytia hemisphaerica)
CACAACCTACGACCTATCCCCACTCCCGCCACTCGCACACACAAAATGAA
GATTTGGACCAAATAATAAACAACGGCGCCACACCCGGCCGTAAGTAACG
TACAAAATGAAGACTTGGTCATATTTTGACCAAATAAGACTTTTAATGAA
AATTTTGTTCTTTAATGCTTGCGATCAATCTAGTGTTTGCTCTTCGGACA
AGTTGACTCCCTGTAAAAGCGTAAAAGGGTCTAGTACCAAGTCTAAAAAA
TTTACTGTATTTGGTGTATTCTTTTTCTAAACCCTTTTACAATCTAGCAA
TCACGTCAACTAGTCGGTTTTCCCAAACGAAGAAGGAACTCATTTTTACA
CGTCGAAATATAGAGAATATGGAGCAAGTAGAAAAGAAATGTAAGTTAAA
CCATCCAATTTGTAAACTGAAGAAATTACTGAAACCCTGCACTGTTTTAA
TGTCTATTTGACCAGAGAGATAATCCTCTAAATCTCAAATTTTCCCACTT
TTTTAGTGACAGACCCGGAAGAATCAACAAAAGATACACCAGATGAATCA
ACAAAAGATACACCAGATGAATCAACAAAAGATACACCAGAAGAGAACGA
ACAAGACCTGACATCCATCCCTTCCAGTATGTATAATGAGTGTATAACTA
TATTTTAAGTTAATCAAAGCTCAAGCCCTGTGTCCTGTGTGATGTTTTTC
ATTCTCTCAATTTGTGTTAAAAGTTTGAACTTCATAGCAGAAAATCTTCA
TTCAGGTTTTATTTTCATAATTGTCTTTCAATGAAAAATTATTTTATGAA
ATTCTTTTTTTCAGGTCAACCCAAATCTACATCAGAACCAACTGGCAGAA
GCAACAACTACTACCAAGGTATGGAGAAAGTCTTTCTTGTTTTCTGGGCT
AGTAACCCTATTCGTACTAGGCTTTTAGGGGCGGATCAGAACTAGGGGGG
GGGGGCTGTTCCTGTACCAGGCCTTAACTTTTGATCTAGTGGGTCTTTTT
AGATGAAATTTGGCACACAAGATCCTTGTCATGTAAGGTAACTTTTGACA
AAAATTTTTTTTGATGACGTCACTCATCATGCTCAAAGTGAGCAAAAACC
GAATATTTCCTTTGTTCTTATAAGTAGCTATTGTATTCTAACAAAGGCTT
AAGAAAAAAATTGTATGAGCTTAAAATGCTTTTTTATCCTAAATATTCAA
GAAAATACAGTTTAAACGATATATTTGACATAAAAAATAAATTTGTATTG
GAAATGTGTCAATTTTTGTCACACCTTACTGTCAAAAATGTCATCATGCT
CAAGGTGTGAAAATTTTTAGGTGTCATGGCAAAAGCTCTATTTTTTCAAA
AGTTATTAACATTAATCCGACCTTCGAACAGAAACAGCCCCCCCCCCTAG
TACGAATAGGGTTAACTTTTAAATGTTTCAAAGATTTCCAGCCTCTCTCT
TGAGAAAAAACACTGTCATGTATAGACATACTTTTCTCCACTCATTTCCA
CTGCAACATGGGTACTTAATGTTTAAAATTTGTAAAGGGGGAGCCCCTCA
GCCAATTTAGTTCATCTTGAGTCTTTATTCTAATCAACTCAACTCGGAAA
CTACCTTATGTGCTATAGTTACTTGGAGAACCTATTTTTCAACAAAGAAG
TTCAGTTAATGGAGTAGGCTCAAAGCTAAAAATATACTAAATGGGTTAAG
TTAAAAGTTTGCAGACCAAAAATTCCACAAATTGAGTAGTATGTGTCAAT
CCGCCATCTTCGATGAAAATTTTTGGAAATTTGTACCAAATCTGGAGAAG
AAGGCTTGCAGGAAAATTTCTGGAAACTCAAGAATTTTTTTCACCTAAAT
TTATCAATGCTTAGGCTGAGCATATTCTTAAAATGGTCTTAAATATTTGG
CTAATTTCACCCTTAAGTAGTGTTTTTATAAACTAGGTTCTAATAATAGA
CTTATAATTCTATTTTTATTTTATTTTCTAGATCATGTAAGTGGGTATGT
TCAAAAGGTCACCAAAACCAACTATTCTGCCGCTAAAAACTGTAATTATT
TCAATGCTGTTTTGCAGACAGACACAAATACCTTCAGTGCGTTGTTACTA
AAAGAGAGGTAACGAGTGGTAACGAGTGGTAACGATGTGGTAACGAGTGG
TAACGATGTGGTAACGAGTGGTAACGAGGTGGTAACGAGTGGTAACGAGT
GGTAACCAGTTGAAAACGGTGGCCCTAAGTCTCCAAATTTGAATTTCTCG
ATTCTGGTGTTTTTGCAACAGATGCTGATGGCTCTTGAGGTTCTGCAGAA
GGAC

Coding sequence (CDS) from alignment at scaffold_337:99150..101453-

>TCONS_00060211 ID=TCONS_00060211|Name=TCONS_00060211|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_337:99150..101453- (Clytia hemisphaerica)
ATCATGTAAGTGGGTATGTTCAAAAGGTCACCAAAACCAACTATTCTGCC
GCTAAAAACTGTAATTATTTCAATGCTGTTTTGCAGACAGACACAAATAC
CTTCAGTGCGTTGTTACTAAAAGAGAGGTAAGTCAACCCAAATCTACATC
AGAACCAACTGGCAGAAGCAACAACTACTACCAAGTGACAGACCCGGAAG
AATCAACAAAAGATACACCAGATGAATCAACAAAAGATACACCAGATGAA
TCAACAAAAGATACACCAGAAGAGAACGAACAAGACCTGACATCCATCCC
TTCCAATGGAGCAAGTAGAAAAGAAATATCATGTAAGTGGGTATGTTCAA
AAGGTCACCAAAACCAACTATTCTGCCGCTAAAAACTGTAATTATTTCAA
TGCTGTTTTGCAGACAGACACAAATACCTTCAGTGCGTTGTTACTAAAAG
AGAGGTAAGTCAACCCAAATCTACATCAGAACCAACTGGCAGAAGCAACA
ACTACTACCAAGTGACAGACCCGGAAGAATCAACAAAAGATACACCAGAT
GAATCAACAAAAGATACACCAGATGAATCAACAAAAGATACACCAGAAGA
GAACGAACAAGACCTGACATCCATCCCTTCCAATGGAGCAAGTAGAAAAG
AAATATCATGTAAGTGGGTATGTTCAAAAGGTCACCAAAACCAACTATTC
TGCCGCTAAAAACTGTAATTATTTCAATGCTGTTTTGCAGACAGACACAA
ATACCTTCAGTGCGTTGTTACTAAAAGAGAGGTAAGTCAACCCAAATCTA
CATCAGAACCAACTGGCAGAAGCAACAACTACTACCAAGTGACAGACCCG
GAAGAATCAACAAAAGATACACCAGATGAATCAACAAAAGATACACCAGA
TGAATCAACAAAAGATACACCAGAAGAGAACGAACAAGACCTGACATCCA
TCCCTTCCAATGGAGCAAGTAGAAAAGAAATATCATGTAAGTGGGTATGT
TCAAAAGGTCACCAAAACCAACTATTCTGCCGCTAAAAACTGTAATTATT
TCAATGCTGTTTTGCAGACAGACACAAATACCTTCAGTGCGTTGTTACTA
AAAGAGAGGTAAGTCAACCCAAATCTACATCAGAACCAACTGGCAGAAGC
AACAACTACTACCAAGTGACAGACCCGGAAGAATCAACAAAAGATACACC
AGATGAATCAACAAAAGATACACCAGATGAATCAACAAAAGATACACCAG
AAGAGAACGAACAAGACCTGACATCCATCCCTTCCAATGGAGCAAGTAGA
AAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037878XLOC_037878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060211-exon-scaffold_337-1575043694:101064..101453TCONS_00060211-exon-scaffold_337-1575043694:101064..101453Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1575043694:100828..100947TCONS_00060211-exon-scaffold_337-1575043694:100828..100947Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1575043694:100586..100639TCONS_00060211-exon-scaffold_337-1575043694:100586..100639Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1575043694:99150..99472TCONS_00060211-exon-scaffold_337-1575043694:99150..99472Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1510915933:101064..101453TCONS_00060211-exon-scaffold_337-1510915933:101064..101453Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1510915933:100828..100947TCONS_00060211-exon-scaffold_337-1510915933:100828..100947Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1510915933:100586..100639TCONS_00060211-exon-scaffold_337-1510915933:100586..100639Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1510915933:99150..99472TCONS_00060211-exon-scaffold_337-1510915933:99150..99472Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1491911889:101064..101453TCONS_00060211-exon-scaffold_337-1491911889:101064..101453Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1491911889:100828..100947TCONS_00060211-exon-scaffold_337-1491911889:100828..100947Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1491911889:100586..100639TCONS_00060211-exon-scaffold_337-1491911889:100586..100639Clytia hemisphaericaexon
TCONS_00060211-exon-scaffold_337-1491911889:99150..99472TCONS_00060211-exon-scaffold_337-1491911889:99150..99472Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060211-proteinTCONS_00060211-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_337supercontigscaffold_337:99150..101453 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.926101	1.07157	0.387586	0.203704	1.2686	1.41329	2.22006	3.19571	3.26218	3.17601	4.01237	4.25665	8.9046	10.0184	11.4	9.03545	8.27389	7.48464	16.5027	17.7071	11.4629	12.0977	4.88923	6.26421	11.0862	14.2821	12.9504	11.9982	14.1742	14.1342
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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