TCONS_00060293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060293
Unique NameTCONS_00060293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060293 ID=TCONS_00060293|Name=TCONS_00060293|organism=Clytia hemisphaerica|type=transcript|length=2237bp
TTTATCATGCCCAATAAAAGCATGCGATCCACGTGCAaaaaccacttttg
ttttccccCACCAATTAAAATGCGGGATATGAGTTATTTGAGGAAACTCA
GGGCAAACACACACAAAATGGCAGCAAAATTCAACCTAttctaaatgata
tttcatgaTTGGAAAGTCTATGAGCTTGTTTTTTAGTCAGtattttcttt
ctattgttgtcatttttttcctgtTTTCAATTTCTCTATAAAAATCCGAT
TACACATTCAAAAAGCTAAATTTGGgcatttaccttgccaatgctgTTAA
TATTGCCaaaccaatttcaagaaaaagattTATAGGTTTTCTCAAAATTA
ACTTTCAAATTAGGTAccgtttaacttttttttctccaaagctTTGTTTC
AGATTGATTGTCACgattgaatttttattcaaacgATAGACCATTTCCTG
CAAGACATAGggagaaaaggaaaaaaaaacttagttGGGATTTATAAGAT
TTTGTTACCGAAGCtcttcaaatgaaaaaaaccaACAAACAAACCAAAAT
CACCCTAAAGTAATAAAAACCTCATAACTATTGCATTTTGTTGGAAAATA
GTAAACCATAAATCACTTCATTCAATGAAATTTagattaataaaaaaatg
aagttgaAGGTTGATTGTGGCAATTATATAAATGAGCTTGACTTGCATCA
ACAACTGGGTAAAGGAACCTTTGCTACAGTATATAGGGCAACAGATAATC
GTGGAAAACCATTTGCTGTCAAGATAAGTGAGTGTATTGATTCCACAACC
TTTGTGACTGCATTTCAAGAGATTCAAATCCTTATGTCAGTGAAGCATAC
AAATATTGCTCGAATGTATGCATTCGATTTCAACCAAAATAAAGCTGTAT
TAGTAATGGAATATTGTGATGGCGGTAATTTGAATAATCGTCTGCACTTC
AAAGTTGTTGATGAACTCAAAGTGGTATGGATGAGCCAGCTAGTTGAAGC
AATTCAATACCTTcatcaaaagaaaattgtaCATCGAGATCTTAAACCAG
AGAATGTGCTATTGAGCAATGACAACATCAAGTTGACAGATTTTGGAATT
TCACGCTATTTTCTACGGAAAGCTACCAGCAAAGCTGAAGAAAACAACTT
ATCAGAGTATATTGAAGCTTACATGGGTACTTTTGCTGGAACACCTTACT
GGATAGCTCCTGAACTATTTGATCATATTTATAGCGAGAAAGCAGATATT
TTCTCACTTGGAGTTTTATTCCATGCCATATTTGTTGCTGATTTTATTCT
GTATACTAATAAAAAGTATTTTGGTACATTTGTGATGCATTATGGGAAGA
AAGTTGGTCTGGGGTTGGCAATGTATGAACAAAAGAATCACAACTTGAAa
ccaaattttgataaaatcaactttaaatttgaacatAATCGAGTAATTGG
GGGTATCATTTCAGAGATGTTACAATATGATCCTAATAAGAGGATTTCAT
TAAATGATGCATCACAAAAGCTGAAAAATATCAGAATTGATAGGAACAAT
AAACGTAAATTAGACAGTGTTGGACAAGTGCCTAAAAGATCAAAACTGAA
TGAAACCAAAGAATTTCCAAACAGTTCCTATTTGGTTTcaagtaaaaatg
aaagtaagTTTGTtagttcaaaacaaacaagcacACCATTAAAAAACAAT
TATTATTTGGAAGGTAGCTCTGCACTAAAGGATAGAATAAATACGCAAAG
TAAAAACAACACTAGAAAAAGACAATATGTAGACCATGTTAGTATGGAGA
AGGTCAAGGAAAAGGATTCTAgttctttcaaaaagaaaattgaccCCACT
GATATTGCTACACCATCAACATCGGATAataaatacaaggaaaaattgga
aaaattattcAACTCTTTGCCATATGCTGATACTGTTAAAACCTTTCTAA
AACTTCCTCACGATAACTGGAAAGGAATCTCTGACGAATGTTGTGATTCG
ATGAAAAAGAATATCAAATGTCAAAACGAGGATAAAAAATCAGAACCTTT
AATTGATGCATTTGGATGGATTGTCTTTTTCGCTGGCCTTTGGCTCTTGT
TTATATATAGTTTTTGgagtatatttttttcaaacttatataaactgttt
ttttcttgaattgATGTAAATTCTTTTAGTTCAAAATCATGTAATGAATT
CCagtcaaaaataataataatcctTGCTTGaacttgt
Run BLAST on NCBI

protein sequence of TCONS_00060293-protein

>TCONS_00060293-protein ID=TCONS_00060293-protein|Name=TCONS_00060293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp
MKLKVDCGNYINELDLHQQLGKGTFATVYRATDNRGKPFAVKISECIDST
TFVTAFQEIQILMSVKHTNIARMYAFDFNQNKAVLVMEYCDGGNLNNRLH
FKVVDELKVVWMSQLVEAIQYLHQKKIVHRDLKPENVLLSNDNIKLTDFG
ISRYFLRKATSKAEENNLSEYIEAYMGTFAGTPYWIAPELFDHIYSEKAD
IFSLGVLFHAIFVADFILYTNKKYFGTFVMHYGKKVGLGLAMYEQKNHNL
KPNFDKINFKFEHNRVIGGIISEMLQYDPNKRISLNDASQKLKNIRIDRN
NKRKLDSVGQVPKRSKLNETKEFPNSSYLVSSKNESKFVSSKQTSTPLKN
NYYLEGSSALKDRINTQSKNNTRKRQYVDHVSMEKVKEKDSSSFKKKIDP
TDIATPSTSDNKYKEKLEKLFNSLPYADTVKTFLKLPHDNWKGISDECCD
SMKKNIKCQNEDKKSEPLIDAFGWIVFFAGLWLLFIYSFWSIFFSNLYKL
FFS
Run BLAST on NCBI

transcript from alignment at scaffold_339:241799..244035

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060293 ID=TCONS_00060293|Name=TCONS_00060293|organism=Clytia hemisphaerica|type=transcript|length=2237bp|location=Sequence derived from alignment at scaffold_339:241799..244035 (Clytia hemisphaerica)
acaagttCAAGCAaggattattattatttttgactGGAATTCATTACATG
ATTTTGAACTAAAAGAATTTACATcaattcaagaaaaaaacagtttatat
aagtttgaaaaaaatatactcCAAAAACTATATATAAACAAGAGCCAAAG
GCCAGCGAAAAAGACAATCCATCCAAATGCATCAATTAAAGGTTCTGATT
TTTTATCCTCGTTTTGACATTTGATATTCTTTTTCATCGAATCACAACAT
TCGTCAGAGATTCCTTTCCAGTTATCGTGAGGAAGTTTTAGAAAGGTTTT
AACAGTATCAGCATATGGCAAAGAGTTgaataatttttccaatttttcct
tgtatttatTATCCGATGTTGATGGTGTAGCAATATCAGTGGggtcaatt
ttctttttgaaagaacTAGAATCCTTTTCCTTGACCTTCTCCATACTAAC
ATGGTCTACATATTGTCTTTTTCTAGTGTTGTTTTTACTTTGCGTATTTA
TTCTATCCTTTAGTGCAGAGCTACCTTCCAAATAATAATTGTTTTTTAAT
GGTgtgcttgtttgttttgaactaACAAActtactttcatttttacttgA
AACCAAATAGGAACTGTTTGGAAATTCTTTGGTTTCATTCAGTTTTGATC
TTTTAGGCACTTGTCCAACACTGTCTAATTTACGTTTATTGTTCCTATCA
ATTCTGATATTTTTCAGCTTTTGTGATGCATCATTTAATGAAATCCTCTT
ATTAGGATCATATTGTAACATCTCTGAAATGATACCCCCAATTACTCGAT
TatgttcaaatttaaagttgattttatcaaaatttggtTTCAAGTTGTGA
TTCTTTTGTTCATACATTGCCAACCCCAGACCAACTTTCTTCCCATAATG
CATCACAAATGTACCAAAATACTTTTTATTAGTATACAGAATAAAATCAG
CAACAAATATGGCATGGAATAAAACTCCAAGTGAGAAAATATCTGCTTTC
TCGCTATAAATATGATCAAATAGTTCAGGAGCTATCCAGTAAGGTGTTCC
AGCAAAAGTACCCATGTAAGCTTCAATATACTCTGATAAGTTGTTTTCTT
CAGCTTTGCTGGTAGCTTTCCGTAGAAAATAGCGTGAAATTCCAAAATCT
GTCAACTTGATGTTGTCATTGCTCAATAGCACATTCTCTGGTTTAAGATC
TCGATGtacaattttcttttgatgAAGGTATTGAATTGCTTCAACTAGCT
GGCTCATCCATACCACTTTGAGTTCATCAACAACTTTGAAGTGCAGACGA
TTATTCAAATTACCGCCATCACAATATTCCATTACTAATACAGCTTTATT
TTGGTTGAAATCGAATGCATACATTCGAGCAATATTTGTATGCTTCACTG
ACATAAGGATTTGAATCTCTTGAAATGCAGTCACAAAGGTTGTGGAATCA
ATACACTCACTTATCTTGACAGCAAATGGTTTTCCACGATTATCTGTTGC
CCTATATACTGTAGCAAAGGTTCCTTTACCCAGTTGTTGATGCAAGTCAA
GCTCATTTATATAATTGCCACAATCAACCTtcaacttcatttttttatta
atctAAATTTCATTGAATGAAGTGATTTATGGTTTACTATTTTCCAACAA
AATGCAATAGTTATGAGGTTTTTATTACTTTAGGGTGATTTTGGTTTGTT
TGTtggtttttttcatttgaagaGCTTCGGTAACAAAATCTTATAAATCC
CaactaagtttttttttccttttctccCTATGTCTTGCAGGAAATGGTCT
ATcgtttgaataaaaattcaatcGTGACAATCAATCTGAAACAAagcttt
ggagaaaaaaaagttaaacggTACCTAATTTGAAAGTTAATTTTGAGAAA
ACCTATAaatctttttcttgaaattggtttGGCAATATTAAcagcattgg
caaggtaaatgcCCAAATTTAGCTTTTTGAATGTGTAATCGGATTTTTAT
AGAGAAATTGAAAacaggaaaaaaatgacaacaatagaaagaaaataCTG
ACTAAAAAACAAGCTCATAGACTTTCCAAtcatgaaatatcatttagaaT
AGGTTGAATTTTGCTGCCATTTTGTGTGTGTTTGCCCTGAGTTTCCTCAA
ATAACTCATATCCCGCATTTTAATTGGTGggggaaaacaaaagtggtttt
TGCACGTGGATCGCATGCTTTTATTGGGCATGATAAA

Coding sequence (CDS) from alignment at scaffold_339:241799..244035

>TCONS_00060293 ID=TCONS_00060293|Name=TCONS_00060293|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_339:241799..244035 (Clytia hemisphaerica)
tcaagaaaaaaacagtttatataagtttgaaaaaaatatactcCAAAAAC
TATATATAAACAAGAGCCAAAGGCCAGCGAAAAAGACAATCCATCCAAAT
GCATCAATTAAAGGTTCTGATTTTTTATCCTCGTTTTGACATTTGATATT
CTTTTTCATCGAATCACAACATTCGTCAGAGATTCCTTTCCAGTTATCGT
GAGGAAGTTTTAGAAAGGTTTTAACAGTATCAGCATATGGCAAAGAGTTg
aataatttttccaatttttccttgtatttatTATCCGATGTTGATGGTGT
AGCAATATCAGTGGggtcaattttctttttgaaagaacTAGAATCCTTTT
CCTTGACCTTCTCCATACTAACATGGTCTACATATTGTCTTTTTCTAGTG
TTGTTTTTACTTTGCGTATTTATTCTATCCTTTAGTGCAGAGCTACCTTC
CAAATAATAATTGTTTTTTAATGGTgtgcttgtttgttttgaactaACAA
ActtactttcatttttacttgAAACCAAATAGGAACTGTTTGGAAATTCT
TTGGTTTCATTCAGTTTTGATCTTTTAGGCACTTGTCCAACACTGTCTAA
TTTACGTTTATTGTTCCTATCAATTCTGATATTTTTCAGCTTTTGTGATG
CATCATTTAATGAAATCCTCTTATTAGGATCATATTGTAACATCTCTGAA
ATGATACCCCCAATTACTCGATTatgttcaaatttaaagttgattttatc
aaaatttggtTTCAAGTTGTGATTCTTTTGTTCATACATTGCCAACCCCA
GACCAACTTTCTTCCCATAATGCATCACAAATGTACCAAAATACTTTTTA
TTAGTATACAGAATAAAATCAGCAACAAATATGGCATGGAATAAAACTCC
AAGTGAGAAAATATCTGCTTTCTCGCTATAAATATGATCAAATAGTTCAG
GAGCTATCCAGTAAGGTGTTCCAGCAAAAGTACCCATGTAAGCTTCAATA
TACTCTGATAAGTTGTTTTCTTCAGCTTTGCTGGTAGCTTTCCGTAGAAA
ATAGCGTGAAATTCCAAAATCTGTCAACTTGATGTTGTCATTGCTCAATA
GCACATTCTCTGGTTTAAGATCTCGATGtacaattttcttttgatgAAGG
TATTGAATTGCTTCAACTAGCTGGCTCATCCATACCACTTTGAGTTCATC
AACAACTTTGAAGTGCAGACGATTATTCAAATTACCGCCATCACAATATT
CCATTACTAATACAGCTTTATTTTGGTTGAAATCGAATGCATACATTCGA
GCAATATTTGTATGCTTCACTGACATAAGGATTTGAATCTCTTGAAATGC
AGTCACAAAGGTTGTGGAATCAATACACTCACTTATCTTGACAGCAAATG
GTTTTCCACGATTATCTGTTGCCCTATATACTGTAGCAAAGGTTCCTTTA
CCCAGTTGTTGATGCAAGTCAAGCTCATTTATATAATTGCCACAATCAAC
CTtcaacttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037929XLOC_037929Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060293-proteinTCONS_00060293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060293-exon-scaffold_339-1491911889:241799..244035TCONS_00060293-exon-scaffold_339-1491911889:241799..244035Clytia hemisphaericaexon
TCONS_00060293-exon-scaffold_339-1510915933:241799..244035TCONS_00060293-exon-scaffold_339-1510915933:241799..244035Clytia hemisphaericaexon
TCONS_00060293-exon-scaffold_339-1575043694:241799..244035TCONS_00060293-exon-scaffold_339-1575043694:241799..244035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:241799..244035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.5106	4.98133	2.71363	3.3525	2.94895	2.01338	3.05881	2.84256	1.96066	2.35556	2.81807	1.79424	3.1879	2.79111	3.56618	5.3195	2.98111	3.20361	3.01263	2.89952	3.36592	2.87105	8.80556	8.55261	4.48901	5.86702	2.06294	1.56162	4.52414	4.47091
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00060293 vs. Swiss-Prot (Human)
Match: ULK3 (Serine/threonine-protein kinase ULK3 OS=Homo sapiens GN=ULK3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.347e-27
Identity = 83/296 (28.04%), Postives = 145/296 (48.99%), Query Frame = 3 
Query:  693 LHQQLGKGTFATVYRATDNRGKPFAVKISECIDSTTFVTA-----FQEIQILMSVKHTNIARMYAFDFNQNKAVLVMEYCDGGNLNNRLHFKVVDELKV--VWMSQLVEAIQYLHQKKIVHRDLKPENVLLSN---DNIKLTDFGISRYFLRKATSKAEENNLSEYIEAYMGTFAGTPYWIAPELF-DHIYSEKADIFSLGV-LFHAIFVADFILYTNKKYFGTFVMHYGKKVGLGLAMYEQKNHNLKPNFDKINFKFEHNRVIG------------GIISEMLQYDPNKRISLND 1508
            L ++LG GT+ATVY+A   +     V I +C+   +   A       EI+IL  ++H +I ++  F ++ +   L+ME+C GG+L+  +H + +   KV  V+M QL  A+Q+LH++ I H DLKP+N+LLS+    ++KL DFG +++             +S + E ++    G+P ++APE+     Y  + D++S+GV L+ A+F         +  F +                         +F ++  K   NRVI              ++  +L+ DP++RIS  D
Sbjct:   16 LTERLGSGTYATVYKAYAKKDTREVVAI-KCVAKKSLNKASVENLLTEIEILKGIRHPHIVQLKDFQWDSDNIYLIMEFCAGGDLSRFIHTRRILPEKVARVFMQQLASALQFLHERNISHLDLKPQNILLSSLEKPHLKLADFGFAQH-------------MSPWDEKHV--LRGSPLYMAPEMVCQRQYDARVDLWSMGVILYEALF--------GQPPFASR------------------------SFSELEEKIRSNRVIELPLRPLLSRDCRDLLQRLLERDPSRRISFQD 263
The following BLAST results are available for this feature:
BLAST of TCONS_00060293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ULK31.347e-2728.04Serine/threonine-protein kinase ULK3 OS=Homo sapie... [more]
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