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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060784 ID=TCONS_00060784|Name=TCONS_00060784|organism=Clytia hemisphaerica|type=transcript|length=1427bp CACGATTACATTTTTCCCAATGACCGGATTGGCATAAAATTACATCAGCT TTTCGTGAGAGCACGAGGTTGTAAATATTCTTGTCCAAAGAATATAATCC TACTTAGATCAACTGAAGGAGAAGATGGCATCTAAGCTTTGTTGAAAAAG TGAACGACAATATGGACGGATAATGAAAGATAAAAAAGATTCCTTAGGGA ATATCAAACCATATCGTTTCGACAGTAATGGGTGATGGAGAATCTCTATT AGAAACTATGAAATTGTAGGTGAATTGTGAATAAATTGAAAACGAGATAA CAATAAAATGgagagtttgaatttgtttattttgcaacAGGTCATCAAAA AACGTTCCTCGCATGAAGAGGGTACAATTCAAGACCTAAAAAAGCAAAAG TTTCATTTCCAAAAACTTGTTCAAAGCATTGATTCTTTGTCTGATGGACA GGCTACATTATCATACAATGATGAtaattttcgtgaattttctgTCCATA TTTCACCAAATGATGGACCGTATAAAGGAGGCAAGGTTGGGTTTAACTTC AAAATGAAGCCTTCGTACCCAAGCACACCACCTCAGATCACATGTCAAAA CATTATTTACCATCCGAACATTGATGATGAAGGTGACATCTGCTTAAGTG TACTGAATGAATGGTCTAGCCAAAACAACGATTTGGTGGATTGTATCCAG GGACTTTTGTATCTGTTACATTATCCTAATTTGGAGGATCCGCTGTCTCC CTTTTTTGCCCCTGGTGAAGACGAAAATGAGTTCCAAGAGAACGTAAAAT TAACAATGGCTGGAAGTGTTTTTAATGGAGTGACATCTGCTTAAGTGTAC TGAATGAATGGTCTAGCCAAAACAACGATTTGGTGGATTGTATCCAGGGA CTTTTGTATCTGTTACATTATCCTAATTTGGAGGATCCGCTGTCTCCTTA TTTTGCCCCTGGCGAAGACGAAAATGAGTTCCAAGAGAATGTAAAATTAA CAATGGCTGGAAGTGTTTTTAATGGAGTTCTTTTTGATTGTTTGTTATCA CAATAAAACTTTTCGAATCATTCTTACTAAATATAGATCCTGttttattt taaacatttgACCTTTCGCTAGACGTCTTTTAAAACTAATCAAAATACCT GGATTCTTTTGCAATTTTCAGTTTAGTTTCAGTCTGTAGTTTCATTTGTG TCCTAACTATCCATTTTTTGAAACTCCCTCAGAGGTATCTTGCTGTATGT ATAGCAACTCTTTGTGTAAATTgtaaataacatttttttttaaaacaatt tgaaatatcagatatttttgtcgattttgtGTTCTATAGTTTTCTGGTGA TCTGAATTTTTAGATTGACTATAAGTACTATTTTTTAAGaattaaagaaa atcaaataatATGAAATTTAACAGACA Run BLAST on NCBI protein sequence of TCONS_00060784-protein >TCONS_00060784-protein ID=TCONS_00060784-protein|Name=TCONS_00060784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MESLNLFILQQVIKKRSSHEEGTIQDLKKQKFHFQKLVQSIDSLSDGQAT LSYNDDNFREFSVHISPNDGPYKGGKVGFNFKMKPSYPSTPPQITCQNII YHPNIDDEGDICLSVLNEWSSQNNDLVDCIQGLLYLLHYPNLEDPLSPFF APGEDENEFQENVKLTMAGSVFNGVTSA Run BLAST on NCBI transcript from alignment at scaffold_349:420356..426775+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060784 ID=TCONS_00060784|Name=TCONS_00060784|organism=Clytia hemisphaerica|type=transcript|length=6420bp|location=Sequence derived from alignment at scaffold_349:420356..426775+ (Clytia hemisphaerica) CACGATTACATTTTTCCCAATGACCGGATTGGCATAAAATTACATCAGCT
TTTCGTGAGAGCACGAGGTTGTAAATATTCTTGTCCAAAGAATATAATCC
TACTTAGATCAACTGAAGGAGAAGATGGCATCTAAGGtaagaattttttg
atttctagCATGTAGTTCCcctgtttttgtttaaaacgttaacaaatgtt
atttgatttaatgggttcaatgtatcaaatttctcagtttagttgacact
ttggtatctttgttgcgtcacagcgaaaggattgtttttagtttagtttg
tatctttgaaagatccCATCAGAATTAGGCAGGGTtgttggatttaggac
cactcacggaaTTGAGTAAATTTGCGAAAtatatccagacgatctcaatc
gaacggaatcgacgatcgagacagtcgaaccaaatctaacgcaatcgacc
gattgaaattcgattgtcagtcgggtgtttaagataaaaactgcaattat
tgctcttttcggaaattattgccgaaaacggcaattttttaaacgatgaa
atgctgaatcagcaaaatgtgttgtccttttaagggcaaagatgtcagag
gtgtttgaaaattgtaaaattgcatcgagaaaaaggtttttcgggttttt
aaaagtgattttttcaatttttcgttgctcaataacttgaaaagttctaa
aataatatgttaaaagatcctgcatcgatgccgaaacacagccagaaaga
aataacaaaacccccgttgtaaatttgtttacatatgactcgattttgct
atctgcatttctaacaaaaaccagttgaaaacaaaactaaacgaggcaca
gtgggcctacttatcgcgagggtgtcaaataccactaGGGATTTATGTTA
GGAACAGATCATGCTGATTACCCTCTTATAATGTGCCATAGgttataaaa
acttgaaaaaacatcaatttttagggTAGGAACCATTTTTGGTTTCCCTA
CCCGGGTATTTAGGGTCCACCAACTGCTCNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttttctgctgattcagcatt
tcatcgttgaaaaaattgccgttttcggcaataatttccgtaaagagcaa
taattgcagtttttatcttaaacacccgactgattgtcgaacgcaatcga
atctcaatcgaatattaccgcaattttcagattcgattgatgttcgattg
tgtcgattgcgtttgatcgtcgattcattgacccccgcatttttcatcgc
ataatttctacgggaaatcgaaagtaatttcattcggcttgcgttcgatt
tggtttgactggttctATCGtcgattgggccattccagaaaaattttgtt
accccccgtcggacgacgtgcattttttaattttttctagcctcggaaat
aatttttcttttccagtgcgcagtggtggtcggaaattccaataaaaatc
catgtacttttgcaaaatgcatcggaaattccactcttttttgccttttt
taattcaattgccttggaaattcacacattttcttctctcgccttggaaa
tttcgaagtttggtgaaaacttttgcccttggaaatcctgtgtcgtccgc
ccccctgttacaaacaaattctggaatggcccattccgttcgattgagat
cgtcttgGATATAATAATTCTGGGAAATCCTGTTAATTTTTAACTTCAGA
GGACATTAGGggacccgtccatattcatttgacaacgcataaTGTCAAAT
TGCCGTTATCTTCTGAACACCCCCTACCCCCCACAGATAACGTCAAGCAA
TTTATACCAAAAGTTGTCgccattttttcatcaaagttttcctgtTACAA
AGTCCGTACTTGGTTGTACCCGTGTgtgtatgtgttcttttaactaatga
cctttatttaaaaagaaattaaaagctccacttAGCGCTAGGTCCGTGCC
ATGCTTTAGGCATACCACCTTCTTTGCCCATTTGTGCGATGTGGTTCACT
TGATTGCACAAACAATAAAAATATGATAATGATATCATAGCGCGAACCAA
TGGGATTATATATGCGAGCAAATTTTCATGCAATTCATgcacaaatatat
tttcaacagTTAGAAAAGTTTAGTGTGGTTGGTGGTAACAAATATttgcg
attttcacaaaaaaatataccttgaaacctaacttttgaaaccCCCCCCA
Tcccctcataacgtcaatttgatgatttgcgttgtcaaatgaatatggac
agGTTGCCATACAATTTCAGTCAAGGAAATAGCATAGAACTAGAGTGCTG
CGAAATACATCTTTACAATATTTCGCAGCAATACAGTTGCGCCCACACAT
TTTGTTGCTCTCCACTGTTGCACTGTTTGGTCTCTGTGAGGTAAACAAAC
CTGTTTTTTCTGCATTTCCTTAGGGAGAATTggttgagcttttcttaagt
ttttAAGAACAGAATCCCTctcaatttttatattttctttctatttatGA
TATTATTACCACTGTGTAAAAACTCCTCGCAGTCAAAAATGCATTTTCCT
GGCCCATTTCCAAGAAGAtaaaattacaagaaaaatccCTTTGACAACAC
TTGCCTTTGAACAGAAAACAGGGTTGAAGGGTGACACAAAAGCCTTCaga
ccatttttcatgcccttttagcgtccggtcatcggacgctgccccccccc
ctgaaatctctgaaattttggtaaaaacagcctttttagcagaaaaacac
aagaaagagtgccctttttggccaccaacggacgctgccctgcctttcta
aaatatggcctggcCTTCACAAAATCATGTGcattttagggaaaattttc
TCACTAGGattttaatttcctacctaGGGATTTTTTGCTTAATCATTCTT
GACAGTAAGGCTGAATATCATCGCCTACTGGAATGTACAGGTCTTTCATT
TCACAGAATCAACTAAAATTAACACTTATCCAAATCGTGCTGGTCGAGGC
AACTTTTTGTGGTCACAATTGACACTTGCTGCTAGTGGTGTGTTGTGGTT
ATAGATCTAATATACCTTTCCCCGTATAAATTCAAACTTCCCGGAAAAAT
ATGCGCTTCACCATTGTGCTCAAAATTATTTGGGAGGTAAACAGCACATT
TTTGCCAGGGTTGTTTACCTCCAGAAAACCAACCTTCCCTAGagaaacgc
aggcaaaaacagggttgtttacctccagagaaaaaaatgttgggAGTATC
AAAATAATGTGTGTGCATCTGTCTTGATGAAGTGTGATTCAAAGCTATGA
GATTAAATATTCTGTTATCTTATAATTTCAGCTTTGTTGAAAAAGTGAAC
GACAATATGGACGGATAATGAAAGATAAAAAAGATTCCTTAGGGAATATC
AAACCATATCGTTTCGACAGTAATGGGTGATGGAGAATCTCTATTAGAAA
CTATGAAATTGTAGGTGAATTGTGAATAAATTGAAAACGAGATAACAATA
AAATGgagagtttgaatttgtttattttgcaacAGGTCATCAAAAAACGT
TCCTCGCATGAAGAGGGTACAATTCAAGACCTAAAAAAGCAAAAGTTTCA
TTTCCAAAAACTTGTTCAAAGCATTGATTCTTTGTCTGATGGACAGGCTA
CATTATCATACAATGATGAtaattttcgtgaattttctgTCCATATTTCA
CCAAATGATGGACCGTATAAAGGAGGCAAGGTTGGGTTTAACTTCAAAAT
GAAGCCTTCGTACCCAAGCACACCACCTCAGATCACATGTCAAAACATTA
TTTACCATCCGAACATTGATGATGAAGGTGACATCTGCTTAAGTGTACTG
AATGAATGGTCTAGCCAAAACAACGATTTGGTGGATTGTATCCAGGGACT
TTTGTATCTGTTACATTATCCTAATTTGGAGGATCCGCTGTCTCCCTTTT
TTGCCCCTGGTGAAGACGAAAATGAGTTCCAAGAGAACGTAAAATTAACA
ATGGCTGGAAGTGTTTTTAATGGAGTtatttttgattgtttgttaTCACA
ATAAAACTTTTCGAATCATTCTTACTAAATATAGATCCTGTTTTAAACAT
TTGACCTTTCGCTAGACGTCTTTTAAAACTAATCAAAATACCTggatttt
tttgcaattttcagtTTAGTTTCAGTCTGTTTAGTTTCATTTGTGTCCTA
ACTATCCATTTTTTGAAACTCCCAGAGAGGTATCTTGCTGTATAGCAAAT
CTTTGTGTAAATTGtaaataacatattttttttaaaacaatttgaaatat
cagatatttttgtcgattttgtGTTTTATAGTTTTCTGGTGATCTGAATT
TTTAGATTGACTATAAGTactattttttaagaaaatcaaataatataaaa
tttaaCAGACAATTATTTTAAGGCTATGGTCTCAtctcatacacgctttt
tttataagtgCTTATGGTGtgctttggatgagggtcaagtattcttagga
aaatgcgaaaattgagggtgaaatattcttaNTGTCAAAACATTATTTAC
CATCCGAACATTGATGATGAAGGTGACATCTGCTTAAGTGTACTGAATGA
ATGGTCTAGCCAAAACAACGATTTGGTGGATTGTATCCAGGGACTTTTGT
ATCTGTTACATTATCCTAATTTGGAGGATCCGCTGTCTCCTTATTTTGCC
CCTGGCGAAGACGAAAATGAGTTCCAAGAGAATGTAAAATTAACAATGGC
TGGAAGTGTTTTTAATGGAGTTCTTTTTGATTGTTTGTTATCACAATAAA
ACTTTTCGAATCATTCTTACTAAATATAGATCCTGttttattttaaacat
ttgACCTTTCGCTAGACGTCTTTTAAAACTAATCAAAATACCTGGATTCT
TTTGCAATTTTCAGTTTAGTTTCAGTCTGTAGTTTCATTTGTGTCCTAAC
TATCCATTTTTTGAAACTCCCTCAGAGGTATCTTGCTGTATGTATAGCAA
CTCTTTGTGTAAATTgtaaataacatttttttttaaaacaatttgaaata
tcagatatttttgtcgattttgtGTTCTATAGTTTTCTGGTGATCTGAAT
TTTTAGATTGACTATAAGTACTATTTTTTAAGaattaaagaaaatcaaat
aatATGAAATTTAACAGACA Coding sequence (CDS) from alignment at scaffold_349:420356..426775+ >TCONS_00060784 ID=TCONS_00060784|Name=TCONS_00060784|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_349:420356..426775+ (Clytia hemisphaerica) ATGgagagtttgaatttgtttattttgcaacAGGTCATCAAAAAACGTTC CTCGCATGAAGAGGGTACAATTCAAGACCTAAAAAAGCAAAAGTTTCATT TCCAAAAACTTGTTCAAAGCATTGATTCTTTGTCTGATGGACAGGCTACA TTATCATACAATGATGAtaattttcgtgaattttctgTCCATATTTCACC AAATGATGGACCGTATAAAGGAGGCAAGGTTGGGTTTAACTTCAAAATGA AGCCTTCGTACCCAAGCACACCACCTCAGATCACATGTCAAAACATTATT TACCATCCGAACATTGATGATGAAGGTGACATCTGCTTAAGTGTACTGAA TGAATGGTCTAGCCAAAACAACGATTTGGTGGATTGTATCCAGGGACTTT TGTATCTGTTACATTATCCTAATTTGGAGGATCCGCTGTCTCCCTTTTTT GCCCCTGGTGAAGACGAAAATGAGTTCCAAGAGAACGTAAAATTAACAAT GGCTGGAAGTGTTTTTAATGGAGTGACATCTGCTTAAATGgagagtttga atttgtttattttgcaacAGGTCATCAAAAAACGTTCCTCGCATGAAGAG GGTACAATTCAAGACCTAAAAAAGCAAAAGTTTCATTTCCAAAAACTTGT TCAAAGCATTGATTCTTTGTCTGATGGACAGGCTACATTATCATACAATG ATGAtaattttcgtgaattttctgTCCATATTTCACCAAATGATGGACCG TATAAAGGAGGCAAGGTTGGGTTTAACTTCAAAATGAAGCCTTCGTACCC AAGCACACCACCTCAGATCACATGTCAAAACATTATTTACCATCCGAACA TTGATGATGAAGGTGACATCTGCTTAAGTGTACTGAATGAATGGTCTAGC CAAAACAACGATTTGGTGGATTGTATCCAGGGACTTTTGTATCTGTTACA TTATCCTAATTTGGAGGATCCGCTGTCTCCCTTTTTTGCCCCTGGTGAAG ACGAAAATGAGTTCCAAGAGAACGTAAAATTAACAATGGCTGGAAGTGTT TTTAATGGAGTGACATCTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060784-exon-scaffold_349-1491911889:420356..420491 | TCONS_00060784-exon-scaffold_349-1491911889:420356..420491 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1510915933:420356..420491 | TCONS_00060784-exon-scaffold_349-1510915933:420356..420491 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1575043694:420356..420491 | TCONS_00060784-exon-scaffold_349-1575043694:420356..420491 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1491911889:424937..425629 | TCONS_00060784-exon-scaffold_349-1491911889:424937..425629 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1510915933:424937..425629 | TCONS_00060784-exon-scaffold_349-1510915933:424937..425629 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1575043694:424937..425629 | TCONS_00060784-exon-scaffold_349-1575043694:424937..425629 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1491911889:426178..426775 | TCONS_00060784-exon-scaffold_349-1491911889:426178..426775 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1510915933:426178..426775 | TCONS_00060784-exon-scaffold_349-1510915933:426178..426775 | Clytia hemisphaerica | exon |
TCONS_00060784-exon-scaffold_349-1575043694:426178..426775 | TCONS_00060784-exon-scaffold_349-1575043694:426178..426775 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_349 | supercontig | scaffold_349:420356..426775 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060784 vs. Swiss-Prot (Human)
Match: UBC12 (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.353e-21 Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 2
Query: 317 LNLFILQQVIKKRSSHEEGTIQDLKKQKFHFQKLVQSIDSLSDGQAT-LSYND-DNFREFSVHISPNDGPYKGGKVGFNFKMKPSYPSTPPQITCQNIIYHPNIDDEGDICLSVLNEWSSQNNDLVDCIQGLLYLLHYPNLEDPLSPFFAPGEDENE--FQENVKLTMAG 814
+ LF L+Q KK GT KK ++ + I+ L+ + +S++D D+ F + I P++G YK GK F+FK+ YP PP++ C+ ++YHPNID EG++CL++L E + I GL YL PN EDPL+ A N F++NV+ +M G
Sbjct: 2 IKLFSLKQQ-KKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 170
The following BLAST results are available for this feature:
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