TCONS_00062829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062829
Unique NameTCONS_00062829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062829 ID=TCONS_00062829|Name=TCONS_00062829|organism=Clytia hemisphaerica|type=transcript|length=2345bp
TTACGTTTCACAATGTCCTATCGCTAGTGGTCAATCGTTCACCTATGAAT
TCAAGGCAGAACCAAAGGGTACTTATTGGTATCACAGCCATGTTGGTGCA
CAGCGGAGTAATGGGGTGTTTGGGGCGTTGATTATCAAAGAACGCCCTAA
AGATGAAGAGAAAAAAGTTCCAGTGGATGTTATCATGTCTATTGGTGATT
GGCATCATACAAGTTCTGAAGAAGTGTATATAAAAGCAGTTTACGGCAAT
TTTGTTGGTAAAAAAGCATATGAAGACACCAAGACTTTGGATGGTGGTAA
ATTCTCTGGTGTACCATGGAACAGTGCTCTCATTGAAGGAAAAGGAAGAT
TCAAAAATGAACAAACTGGTGAAGACAACGGCGCACCTTTAACCTGGTAT
CGTGTGAAAGAGGGAGCACAGTACCGCTTCCGTGTCATTGGTGTCGGCTC
TATGTATCCAATACGTATCTCAGTCGATCAGCATCCGATCATGGTTATCG
CCTCAGATGGTTATGATCTAAAGCCTATGATGGTTGAATCGTTCATTATC
AACCCAGGGGAGcgttttgactttttgattAATGCAACTCAGTCGGTTGG
GAATTATTGGATACGCGGTGAAAGTATTGAGGTTGGAGTTCAACACCATT
CCGTAGAAGCTATTTTCAGTTATGAAGGAGCTAATAAAACAGAAGAGCCG
AAAACAACAAAACGCCAATGTAGTTCTGATAACCCCTGTATCGTTGCCAA
CTGCCCTTTCTATTACTACTTCGACCAAGACAAACATTCGCATATCAAAT
GCAAGCTCATGTCCGACTTCGAAAACGCCGTTGAAACACCTGCTCCTGTT
TTTGATGAAACTTCACAAGAACATTTCATGAATTTCGCATTCCCTGGAGA
CGATGAACCCGGGGCAATCAATGGTCGTAAATTCGAATTCCCAGGGGTGA
ACTCATTGTTTCAATCAGATGAAATTGACAATTATGATTGTTCGAAACAC
AAATGTGGAGACGGAGAAGTTTGTTATTGTCATTATGAATTAAACGTGCC
TTATGACCACACTATCCAGATGGTATGGGTCAATAAAGGTAGCGGCGCCG
GGTGGGGCCACCCGATTCACTTACACGGACATAGCTTCTACGTCGTCAAA
ATGGCTTATACCCAACAAAACATGACAACAGGTCTACTCCTTGGATCCAA
AGGTGATTCCCTAGGGGAAAATCAAGATATCACGTGCAGTAATCCAAATG
GGCGCCGTTTTTGTAATACAGCATCATGGAAAAATTCCACATGGGGAAAA
AATAATATCCCCGGCTTGAACTTAAAGAATCCACCACGTAAAGACACATT
GATTATTCCCACCGGTGGATATGCAGTGATCCGCATCAGGACCGACAACC
CTGGGAAATGGTTTTTACATTGCCACGTGGAGGAACACATGTTAGACGGT
ATGGCAATGATCATTAACGAAGCTTCAGATCGAGTACCAAAACCACCAGC
TGGTTTCCCTATTTGCCAGAACTTCTATAATGATCCAACAAGAGATATGT
CATACATCAGAGCTAAACAGATCGAAGGAGAAGGCGAAACATGTGTCCAA
ACCGATCTTTTCGTTGCTGTGTGTTGTGTGTTGGGTGTTTTCGTTCTCAT
CCAATTCATAGTCATCGTTGTCCTGTGTATGAGAAGCAAATCAAGAGCTG
CTGTTGAAAACATTGCAATGAAATAATCACTGGTGTGTGTTTTTAAACCT
TAGAAAGGGCACCTTATGTGTGTAATATACAAAGCAATGTCTCATAAACA
ACTTTCGTCTTAAAAGTGAAGAAATGGTGATTCTTTTTATGATGTATGAT
ATATATTcttgacaatttttttatgaagtcTATGTACACGAGTTAACTCT
TTGGAGTTTTAGGCCTACGTTAGTACAGGTTTGAAGctttttggacaatt
ttaaaatcttcatgatttttttttctcatttgttagtaatattttagaat
taggatttaattttttcagtcGCCCAGCCAATTTTCACGCACCATTCTGT
AACGATAATTTCGGCTACCGTTACCCAGCATTCAACGTTTTCTCAACGTT
CATTTAATCTTCATAACGTCTATATAGCGTTAGAttaatgttgaaacaac
gttatgcgGCAGCTGGGTAATGCTTTTTGAGTACCTTATATAAAAGAGGC
AAATATTGTTTCCCCAGTGCGTGCTATTTTGTTCGTGCGTGTTTTTTTAG
AGTAAATCCTCTTTTAATATTTCATACAAACGAATTGTATATAGAATGAT
AATAGAAAATAAAACCAATATTATTGTTGTAATTAATACCTGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_372:183619..189546-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062829 ID=TCONS_00062829|Name=TCONS_00062829|organism=Clytia hemisphaerica|type=transcript|length=5928bp|location=Sequence derived from alignment at scaffold_372:183619..189546- (Clytia hemisphaerica)
TTACGTTTCACAATGTCCTATCGCTAGTGGTCAATCGTTCACCTATGAAT
TCAAGGTAATATAAGTTACGTTTCACAATGTCCCATCGCTAGTGGTCAAT
CGTTCACCTATGAATTCAAGGTAATATAAGTTACGTTTCACAATGTCCCA
TCGCTAGTGGTCAATCGTTCACCTATGAATTCAAGGTAATATAAATTACG
TTTCACAATGTCTCATCGCTAGTGGTCAATCGTTCACCTATGAATTCAAG
GTAATATAAGTTACGTTTTACAATGTCTCATCGCTAGTGGTCAATCGTTC
ACCTATGAATTCAAGGTAATATAAGTTACGTTTCACAATGTCCCATCGCT
AGTGGTCAATCGTTCACCTATGAATTCAAGGTAATATAAGTTACGTTTCA
CAATGTCCCATCGCTAGTGGTCAATCGTTCACCTATGAATTCAAGGTAAT
ATAAGTTACGTTTTACAATGTCCCATCGCTAGTGGTCAATCGTTCACCTA
TGAATTCAAGGTAATATAAGTTACGTTTCACAATGTCCCATCGCTAGTGG
TCAATCGTTCACCTATGAATTCAAGGTAATATAAGTTACGTTTCACAATG
TCCCATCGCTAGTGGTCAATCGTTCACCTATGAATTCAAGGTAATATAAG
TTACGTTTCACAATGTCCTATCGCTAGTGGTCAATCGTTCACCTGTGAAT
TCAAGGTAATATAAGTTACGTTTCACAATGTCCCATCGCTAGTGGTCAAT
CGTTCACCTATGAATTCAAGGTAATTATTACGATGGATTACTTAACTAAA
CACATTTTTTTCTTTCTTAGAACCCATTTTATAAGAAGATTTTAGGCTGA
AATTCGTTGAAAAATTAAGAACATCGTAAGAACATGCCCAGCCTCAGTTT
GGCAAAAAATGACAAGAAACTACAATTCTTTCCTCTTTTCAAGCAGTTTT
AACCGAACTTAGGGACGAATTTTCTAAAATCGAGAGTCAAATATTGTCCA
AATTTTACCAATTTTATAAGTGCTCTTTATTTTGCACGATATTGTCGATT
TAGAAAAGTCTGAAAAATTAAGAACGCATTTAAGAACATTATAGACTGAA
AATTGCTAAAAAAAGTAAGCACATCCAGGCTCAGCCAAATTCTAGGTGTT
CTAGTTTTTGACCTATGATTAGTCAAACCCTATACTGTTTTATTAGGGTT
TGGCAAGGTTAAAAACATAGAGAGCGATCTAGGGCCTTGAAATCTTATTT
TCTGCACAAACCAGGCTTTTGCTTAGCTTATGAATACTTTCCCCACCAAA
AATTAATTTTCCTTGAAGAATATTATTTTCAAACATCATACTTTCCAACA
CAGGCAGAACCAAAGGGTACTTATTGGTATCACAGCCATGTTGGTGCACA
GCGGAGTAATGGGGTGTTTGGGGCGTTGATTATCAAAGAACGCCCTAAAG
ATGAAGAGAAAAAAGTTCCAGTGGATGTTATCATGTCTATTGGTGATTGG
CATCATACAAGTTCTGAAGAAGTAAGAAATTTAATGGGATAAATTTTCGC
GGGGATTAAATTTCGCGGATTTCACAGATTTGGGTGAAACTAAGTCCGCG
AAATACTTTTGAGAAAGGCTCGAAAAATGTCAAATAGCTACTTTTAAAAT
ATTTACTGGCATCAAAGAAACCCTAATAATGCGTATTTCGACAACCAACA
TGCATAAATTTGGGTTAAAAGGCACAAAATCGTGAAAATATTGTCTCCCT
ATATTGCTGTTCGCCAAATTAAGTCCCCGTGAAATCTCTTAACCACTAAT
TTTAATCCGCTAAATTTCCTCCATTAAAGTACCTGTTTTTTTTCGTTGGC
GAAGCATTGCATTTGATTATCAAGTTAAGTAACGTTGAATCCTCACCGCC
ATCTCTGGTGCAAGCTTTCCAGAAAAATCGGCCTCTCAGCCTCCTTCATT
AAAAAAAGACTAGGTTCAAATCGCCAGTTTTTGAGTATACGGACGCGGTA
GTACACATATAGTAATTCGTCACAGTGAAAGAATTTTATAATTTAGACAA
GAATAAAACTCCCCCTTTTTGCAATTTTTTTTCGAAAAATAGACACTATC
CTTTGAAGTGCTTTAAAGCTAAAGGAGGTTCAAATATGATAAGTGGCAAT
GAAAACGCCACGTGATTGCCAGGAACTTGGTACAACCTCTCCGAAACTCA
TTGAAAGGTGGAAAATAAAAGATAACCATTTCTTTTATATATATCCCCTA
CATATATTTTGACCATTCTTAAAAGTTTTATTTTAGTAGCATATCTTAAT
TTCATTCTTTCAAGGTGTATATAAAAGCAGTTTACGGCAATTTTGTTGGT
AAAAAAGCATATGAAGACACCAAGACTTTGGATGGTGGTAAATTCTCTGG
TGTACCATGGAACAGTGCTCTCATTGAAGGAAAAGGAAGATTCAAAAATG
AACAAACTGGTACATATAACTAATTTAGCTCTAGTGTAGACGGCCGACTT
TCTACCCTGCCTATTCTAATTGTTAGAGTAGGCAGAAATCTTTGCTTGGA
AAGGTTTGAAAGAAGACATTTCATTGACGTCAAAAGAGGGCTATGCATCA
CTTTAGACAGCCCACTTTATGCCCTCTTTAATTCACAATTAGAATAGGCA
GGGCAAAAAGTGGGCCGTCTAAACTAGGGCTTGTCTAAACTAAAGCTTAT
ATTCCCTCGTGTTCTCTCGTGATGAATATTGAAATCTTCATATATATTCA
TTATTGGAGTACTTGTAGATAAACAAAATATCGAGTCGAATTTTCGAGAT
TCAATTTTATTTGGCATTATTTCGGGTGCTCTATATAATAAAATAGAATC
CAAAATATAAAGAATAAAACAGAGCCTCGAAAATATCCATATATTTCATC
GTAGTTCAGTAAATTGATATGAATAAGCAAAATCTAACGTTTTTAACCTT
TTCTTGAGATTTTGGTCAACAAAGCCTTAGTGTTCTTATATAGTTTGTTC
TTATATAAAAAAACCTGTATGTTTCTTATCTATTACACAGGTGAAGACAA
CGGCGCACCTTTAACCTGGTATCGTGTGAAAGAGGGAGCACAGTACCGCT
TCCGTGTCATTGGTGTCGGCTCTATGTATCCAATACGTATCTCAGTCGAT
CAGCATCCGATCATGGTTATCGCCTCAGATGGTTATGATCTAAAGCCTAT
GATGGTTGAATCGTTCATTATCAACCCAGGGGAGCGTTTTGACTTTTTGA
TTAATGCAACTCAGTCGGTTGGGAATTATTGGATACGCGGTGAAAGTATT
GAGGTAGCTTTTAAAACTGTTCTCATTCCGTCTCAGACGAGTGACTATCT
AAACGAACTTAGATGAAATAGCATTTCTGTCTTTAATTTTTAAAGTTTAG
TTTTTCAGAATTTTAGTATAATTTAGATTTTTTGAAAATGATATGATCCG
TCAAAAATGAAAACGCGACTGAAACAGTGTGAAATTTCTTCCCTTGATCT
GTGACTGGACAGATACCTCAAAGACCTTTCAGTGAAACGAGCTTTCTTTA
AAATAAATTATCTCCCGTACTCCTAAGTATGTATCCTCGAAAATTCTTAT
TTCATTGTCCTCTAGGTTGGAGTTCAACACCATTCCGTAGAAGCTATTTT
CAGTTATGAAGGAGCTAATAAAACAGAAGAGCCGAAAACAACAAAACGCC
AATGTAGTTCTGATAACCCCTGTATCGTTGCCAACTGCCCTTTCTATTAC
TACTTCGACCAAGACAAACATTCGCATATCAAATGCAAGCTCATGTCCGA
CTTCGAAAACGCCGTTGAAACACCTGCTCCTGTTTTTGATGAAACTTCAC
AAGAACATTTCATGAATTTCGCATTCCCTGGAGACGATGAACCCGGGGCA
ATCAATGGTCGTAAATTCGAATTCCCAGGGGTGAACTCATTGTTTCAATC
AGATGAAATTGACAATTATGATTGTTCGAAACACAAATGTGGAGACGGAG
AAGTTTGTTATTGTCATTATGAATTAAACGTGCCTTATGACCACACTATC
CAGATGGTATGGGTCAATAAAGGTAGCGGCGCCGGGTGGGGCCACCCGAT
TCACTTACACGGACATAGCTTCTACGTCGTCAAAATGGCTTATACCCAAC
AAAACATGACAACAGGTCTACTCCTTGGATCCAAAGGTGATTCCCTAGGG
GAAAATCAAGATATCACGTGCAGTAATCCAAATGGGCGCCGTTTTTGTAA
TACAGCATCATGGAAAAATTCCACATGGGGAAAAAATAATATCCCCGGCT
TGAACTTAAAGAATCCACCACGTAAAGACACATTGATTATTCCCACCGGT
GGATATGCAGTGATCCGCATCAGGACCGACAACCCTGGGAAATGGTTTTT
ACATTGCCACGTGGAGGAACACATGTTAGACGGTATGGCAATGATCATTA
ACGAAGCTTCAGATCGAGTACCAAAACCACCAGCTGGTTTCCCTATTTGC
CAGAACTTCTATAATGATCCAACAAGAGATATGTCATACATCAGAGCTAA
ACGTAAGTACAATCAAACTCTTTTTGAGATACATAAACCATGATGGACCT
CGTTTTCAAAATGTTTTTTTATAAGAANCAAAATAGTAATGCCCAAAATG
TGACGATTTAGCCCGATTTCTGAGAAAAATTATTTTCTAAATTTGGGCCC
AATAAAAAAAGGGTTTTTTGACTTTGTATGAAATTGCTTCATTAGTTTTT
TCTGATTTTTGGCAGAAAGATAGAGGGCATGATTCCCTATACATTGACTG
AAACCTTTTTACCTGGATAATTTGTTCGTAAAAATTGGATTTTCGTTTTT
GGGAAAAATTTGTTTCTGTCATTTTTTTTTCAAGTTAGCACTTCTGATTA
TTCACTTTGCCATTTTTCTTTCTATTTTTTCATTCAGGTAGGTCCATTCA
GCATGTAGCTTGTTATATTAAAATGTGACTGAATGAAGGAATGATTTCAT
TTGAAAATGGTACTTACTTTGAACTGAATGAAAAATTGCAATGACCGCGA
ACCTCCGAATTTTGGCGCTGCGCCTTTGCCTCTAGACCATTTCTCCATCA
TGGGAGTGCGCCTTCTTATCCCCCTTTTTCATGTTCATATTTTATTCACA
GAGATCGAAGGAGAAGGCGAAACATGTGTCCAAACCGATCTTTTCGTTGC
TGTGTGTTGTGTGTTGGGTGTTTTCGTTCTCATCCAATTCATAGTCATCG
TTGTCCTGTGTATGAGAAGCAAATCAAGAGCTGCTGTTGAAAACATTGCA
ATGAAATAATCACTGGTGTGTGTTTTTAAACCTTAGAAAGGGCACCTTAT
GTGTGTAATATACAAAGCAATGTCTCATAAACAACTTTCGTCTTAAAAGT
GAAGAAATGGTGATTCTTTTTATGATGTATGATATATATTCTTGACAATT
TTTTTATGAAGTCTATGTACACGAGTTAACTCTTTGGAGTTTTAGGCCTA
CGTTAGTACAGGTTTGAAGCTTTTTGGACAATTTTAAAATCTTCATGATT
TTTTTTTCTCATTTGTTAGTAATATTTTAGAATTAGGATTTAATTTTTTC
AGTCGCCCAGCCAATTTTCACGCACCATTCTGTAACGATAATTTCGGCTA
CCGTTACCCAGCATTCAACGTTTTCTCAACGTTCATTTAATCTTCATAAC
GTCTATATAGCGTTAGATTAATGTTGAAACAACGTTATGCGGCAGCTGGG
TAATGCTTTTTGAGTACCTTATATAAAAGAGGCAAATATTGTTTCCCCAG
TGCGTGCTATTTTGTTCGTGCGTGTTTTTTTAGAGTAAATCCTCTTTTAA
TATTTCATACAAACGAATTGTATATAGAATGATAATAGAAAATAAAACCA
ATATTATTGTTGTAATTAATACCTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039358XLOC_039358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062829-exon-scaffold_372-1575043694:189492..189546TCONS_00062829-exon-scaffold_372-1575043694:189492..189546Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1575043694:188026..188193TCONS_00062829-exon-scaffold_372-1575043694:188026..188193Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1575043694:187088..187232TCONS_00062829-exon-scaffold_372-1575043694:187088..187232Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1575043694:186244..186506TCONS_00062829-exon-scaffold_372-1575043694:186244..186506Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1575043694:184995..185931TCONS_00062829-exon-scaffold_372-1575043694:184995..185931Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1575043694:183619..184395TCONS_00062829-exon-scaffold_372-1575043694:183619..184395Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1510915933:189492..189546TCONS_00062829-exon-scaffold_372-1510915933:189492..189546Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1510915933:188026..188193TCONS_00062829-exon-scaffold_372-1510915933:188026..188193Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1510915933:187088..187232TCONS_00062829-exon-scaffold_372-1510915933:187088..187232Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1510915933:186244..186506TCONS_00062829-exon-scaffold_372-1510915933:186244..186506Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1510915933:184995..185931TCONS_00062829-exon-scaffold_372-1510915933:184995..185931Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1510915933:183619..184395TCONS_00062829-exon-scaffold_372-1510915933:183619..184395Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1491911889:189492..189546TCONS_00062829-exon-scaffold_372-1491911889:189492..189546Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1491911889:188026..188193TCONS_00062829-exon-scaffold_372-1491911889:188026..188193Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1491911889:187088..187232TCONS_00062829-exon-scaffold_372-1491911889:187088..187232Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1491911889:186244..186506TCONS_00062829-exon-scaffold_372-1491911889:186244..186506Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1491911889:184995..185931TCONS_00062829-exon-scaffold_372-1491911889:184995..185931Clytia hemisphaericaexon
TCONS_00062829-exon-scaffold_372-1491911889:183619..184395TCONS_00062829-exon-scaffold_372-1491911889:183619..184395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:183619..189546 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.558892	0.16386	0	0	0	0	0	0	0	0.119616	0.277625	1.10065e-10	3.60062	4.12904	1.48144	0.29128	0.645285	0.823275	3.72494	2.57011	0	0	0.000842884	0	0	0	0.835886	0.0865244	0.00350672	0.358691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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