TCONS_00062831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062831
Unique NameTCONS_00062831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062831 ID=TCONS_00062831|Name=TCONS_00062831|organism=Clytia hemisphaerica|type=transcript|length=2972bp
GCTGCATTTTGTGGTGTACTACACGTCCTGCTAAAGTATGGTTGTAATAT
CGGAGAACTGTTATGTAGAACTCAAAAAATGATCTCGCAACTTATTGGAC
TTCATTTCGCCGGGAAGAATGGTGTTTCATTGAAGGGTATACAGGAAGCT
CGAATATGATGTCACGTGAAACTTTTaccTGAACAAACAATTCAGAAAAA
TGTTGTTCCGCTGCATTCTTCTGGCAACAGCGTTCATTACCGTCCAATCT
TACGTTATCCCCGAAGATTTCAAATACGACGAGTGTCACCCCAGCAATGA
GACTTGTGAATACTGGTTGGTCATTCAAGAAAAGCTGACAATGATTTATG
AAGGAGATTTAATTTTAAGTCAGAATGGAACTTTGTATAAGTACGATGAA
GATCCCAACAACATCGCAACACAAATTCCGATGGACAAGGTTGTAACAGT
TGATGGAGTGCATCGAATGGTGATTGCAGTCAATCAATCCGTGCCAGGAC
CTCCTATTATTGCTTATGAAAACCAAAGAATTAGAGTACATGTCAGAAAT
TTCCTTTTGAGTGATTCAGTGACATTACATTGGCATGGTCAACATCAGCG
AGGAACACCTTTTATGGATGGTATTGGTTACGTTTCACAATGTCCCATCG
CTAGTGGTCAATCGTTCACCTATGAATTCAAGGCAGAACCAAAGGGTACT
TATTGGTATCACAGCCATGTTGGTGCACAGCGGAGTAATGGGGTGTTTGG
GGCGTTGATTATCAAAGAACGCCCTAAAGATGAAGAGAAAAAAGTTCCAG
TGGATGTTATCATGTCTATTGGTGATTGGCATCATACAAGTTCTGAAGAA
GTGTATATAAAAGCAGTTTACGGCAATTTTGTTGGTAAAAAAGCATATGA
AGACACCAAGACTTTGGATGGTGGTAAATTCTCTGGTGTACCATGGAACA
GTGCTCTCATTGAAGGAAAAGGAAGATTCAAAAATGAACAAACTGGTGAA
GACAACGGCGCACCTTTAACCTGGTATCGTGTGAAAGAGGGAGCACAGTA
CCGCTTCCGTGTCATTGGTGTCGGCTCTATGTATCCAATACGTATCTCAG
TCGATCAGCATCCGATCATGGTTATCGCCTCAGATGGTTATGATCTAAAG
CCTATGATGGTTGAATCGTTCATTATCAACCCAGGGGAGcgttttgactt
tttgattAATGCAACTCAGTCGGTTGGGAATTATTGGATACGCGGTGAAA
GTATTGAGGTTGGAGTTCAACACCATTCCGTAGAAGCTATTTTCAGTTAT
GAAGGAGCTAATAAAACAGAAGAGCCGAAAACAACAAAACGCCAATGTAG
TTCTGATAACCCCTGTATCGTTGCCAACTGCCCTTTCTATTACTACTTCG
ACCAAGACAAACATTCGCATATCAAATGCAAGCTCATGTCCGACTTCGAA
AACGCCGTTGAAACACCTGCTCCTGTTTTTGATGAAACTTCACAAGAACA
TTTCATGAATTTCGCATTCCCTGGAGACGATGAACCCGGGGCAATCAATG
GTCGTAAATTCGAATTCCCAGGGGTGAACTCATTGTTTCAATCAGATGAA
ATTGACAATTATGATTGTTCGAAACACAAATGTGGAGACGGAGAAGTTTG
TTATTGTCATTATGAATTAAACGTGCCTTATGACCACACTATCCAGATGG
TATGGGTCAATAAAGGTAGCGGCGCCGGGTGGGGCCACCCGATTCACTTA
CACGGACATAGCTTCTACGTCGTCAAAATGGCTTATACCCAACAAAACAT
GACAACAGGTCTACTCCTTGGATCCAAAGGTGATTCCCTAGGGGAAAATC
AAGATATCACGTGCAGTAATCCAAATGGGCGCCGTTTTTGTAATACAGCA
TCATGGAAAAATTCCACATGGGGAAAAAATAATATCCCCGGCTTGAACTT
AAAGAATCCACCACGTAAAGACACATTGATTATTCCCACCGGTGGATATG
CAGTGATCCGCATCAGGACCGACAACCCTGGGAAATGGTTTTTACATTGC
CACGTGGAGGAACACATGTTAGACGGTATGGCAATGATCATTAACGAAGC
TTCAGATCGAGTACCAAAACCACCAGCTGGTTTCCCTATTTGCCAGAACT
TCTATAATGATCCAACAAGAGATATGTCATACATCAGAGCTAAACAGATC
GAAGGAGAAGGCGAAACATGTGTCCAAACCGATCTTTTCGTTGCTGTGTG
TTGTGTGTTGGGTGTTTTCGTTCTCATCCAATTCATAGTCATCGTTGTCC
TGTGTATGAGAAGCAAATCAAGAGCTGCTGTTGAAAACATTGCAATGAAA
TAATCACTGGTGTGTGTTTTTAAACCTTAGAAAGGGCACCTTATGTGTGT
AATATACAAAGCAATGTCTCATAAACAACTTTCGTCTTAAAAGTGAAGAA
ATGGTGATTCTTTTTATGATGTATGATATATATTcttgacaattttttta
tgaagtcTATGTACACGAGTTAACTCTTTGGAGTTTTAGGCCTACGTTAG
TACAGGTTTGAAGctttttggacaattttaaaatcttcatgatttttttt
tctcatttgttagtaatattttagaattaggatttaattttttcagtcGC
CCAGCCAATTTTCACGCACCATTCTGTAACGATAATTTCGGCTACCGTTA
CCCAGCATTCAACGTTTTCTCAACGTTCATTTAATCTTCATAACGTCTAT
ATAGCGTTAGAttaatgttgaaacaacgttatgcgGCAGCTGGGTAATGC
TTTTTGAGTACCTTATATAAAAGAGGCAAATATTGTTTCCCCAGTGCGTG
CTATTTTGTTCGTGCGTGTTTTTTTAGAGTAAATCCTCTTTTAATATTTC
ATACAAACGAATTGTATATAGAATGATAATAGAAAATAAAACCAATATTA
TTGTTGTAATTAATACCTGCAA
Run BLAST on NCBI

protein sequence of TCONS_00062831-protein

>TCONS_00062831-protein ID=TCONS_00062831-protein|Name=TCONS_00062831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp
MLFRCILLATAFITVQSYVIPEDFKYDECHPSNETCEYWLVIQEKLTMIY
EGDLILSQNGTLYKYDEDPNNIATQIPMDKVVTVDGVHRMVIAVNQSVPG
PPIIAYENQRIRVHVRNFLLSDSVTLHWHGQHQRGTPFMDGIGYVSQCPI
ASGQSFTYEFKAEPKGTYWYHSHVGAQRSNGVFGALIIKERPKDEEKKVP
VDVIMSIGDWHHTSSEEVYIKAVYGNFVGKKAYEDTKTLDGGKFSGVPWN
SALIEGKGRFKNEQTGEDNGAPLTWYRVKEGAQYRFRVIGVGSMYPIRIS
VDQHPIMVIASDGYDLKPMMVESFIINPGERFDFLINATQSVGNYWIRGE
SIEVGVQHHSVEAIFSYEGANKTEEPKTTKRQCSSDNPCIVANCPFYYYF
DQDKHSHIKCKLMSDFENAVETPAPVFDETSQEHFMNFAFPGDDEPGAIN
GRKFEFPGVNSLFQSDEIDNYDCSKHKCGDGEVCYCHYELNVPYDHTIQM
VWVNKGSGAGWGHPIHLHGHSFYVVKMAYTQQNMTTGLLLGSKGDSLGEN
QDITCSNPNGRRFCNTASWKNSTWGKNNIPGLNLKNPPRKDTLIIPTGGY
AVIRIRTDNPGKWFLHCHVEEHMLDGMAMIINEASDRVPKPPAGFPICQN
FYNDPTRDMSYIRAKQIEGEGETCVQTDLFVAVCCVLGVFVLIQFIVIVV
LCMRSKSRAAVENIAMK
Run BLAST on NCBI

transcript from alignment at scaffold_372:183619..194529-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062831 ID=TCONS_00062831|Name=TCONS_00062831|organism=Clytia hemisphaerica|type=transcript|length=10911bp|location=Sequence derived from alignment at scaffold_372:183619..194529- (Clytia hemisphaerica)
GCTGCATTTTGTGGTGTACTACACGTCCTGCTAAAGTATGGTTGTAATAT
CGGAGAACTGTTATGTAGAACTCAAAAAATGATCTCGCAACTTATTGGAC
TTCATTTCGCCGGGAAGAATGGTGTTTCATTGAAGGGTATACAGGAAGCT
CGAATATGATGTCACGTGAAACTTTTGTAAGCTCTTTTCAAATGTTGGTC
ATTTTTAATATCGCAAGAATCTCGTATTCTTAACTTCCTCTATTTCTTTC
CCAAAAATTTATAATGGGTGCTACCATCTAAGCTTATCCATTTATCCAAG
TAATTTTTCATTATTTTTATATTTTTTATATTTGGTAATACTTCACTCTT
GAATATCTTTTCAACAAGCACAAAATTGCCATCTAATTCAAGTTATATCA
AAAGTTACAGCTTTTTTTGTCGCCGCTGCAGATTATATTGAGACTGGCTT
TTGGTAGAAAAATGCAAAACTGTTTCCTGTAATGTGCGGACAAGGCACTT
GAGTTTGGGAATTCAAAAAATGTTGTATCTCGTTGTAATATGACCTGGTC
GGTTGGTACGATACACAGTTTATCCCCTTTCAGCTATGTTGAATGTACAT
AGTTGCATCCTTAATCAATACAGGAAAAACAGATTACATTTTTAAAGTCT
CGATATATTTAACATTTGAATGATTTGGTTTTTCAATTCAGGAGTAGACT
CTTTTTTAAAAGCAGCTGGTAACTTTTTGACGACAGCTCTTCTTATATTT
TTACCACTTTGAGTTAAAATTGCACTATTTTATTGGGCCATTCCAGTTTA
TATCCATACAGGGAGAGCGGACGAACATTCCCAGGGGGTTACCCGAGAGG
AATTTCCAGGGGGTCTAAGGAGTGTTTTTCCAAGAGGTAAAAGACTGGTT
TTAGTTCGTCCATCGTCACTTTCAAGTACGAAAAGATGTTTTCCAATGGT
TTCTTTGCAAATTTTGCTTTTTTCCAAGGTAACACTTACAAGAATTTTTT
TTGACTACCCCCCCCCCCCCTATGGATTTTTAATGGAACAGCCCATTTGG
GAGTTAAAACTTGTAGAAAGCCTTTGGAGACATGGCTTGATATCACGGAT
TTTAATATTGTCTAAGATGTAAACACAAAATTGAGTTTTACATTTGACCA
ATATTTAGCCAGTGAAAAAATATACACAGAGAAAACCTCTTTTTAAACAA
AATATTGTTAACTTTATGCCAATGTCAACACTCTTAAGAACTAACAGTTT
ACTTTTTCGAACTGTATAGTACTACTTGATATATATTTGCTTGGGCTTGA
GTGAGGAATAGAATAGAGGCGTTTTGTTACAAACTTAGATAACTTAAGTC
AGGATGTATGTATCGTTATGTATATGAAGTTTTTTTGAATTTCATGGTAT
TTTGATCAAAGTTCATCTCGGGTTCAGGTCACAAAACCCACATATTACTA
TAGTCATACCTTCTTTATAGGGACATAGGGCTTTTTGGGGAATATGACTT
TTTCGTGCATAGGGCTTTTACGGGGGAATGCTCTTCTCTTTATTCATTAT
TTCCCTTTTTAGATTCGAATCCTTACACACTCCAGTAGCGTAGACAGGGA
TGAAGGAACATTTGCTTAGGAGGGCAGATTTAAACGATACAGTAATAATG
TTTTTATACCACGAATAGATAAGTACTTTGTCGTAAAAATCTGCCCTCCT
AAGCAGATTGATCTTCACCCCTGTCTACGCTACTGTACTGCTCTCCTAGC
AGCATCGTTCATTTTTGTGTCCAATCCTACATTATCCCTGAAAATTTCAA
AATTTTAAATTTTTCTTTTTAGACCTGAACAAACAATTCAGAAAAATGTT
GTTCCGCTGCATTCTTCTGGCAACAGCGTTCATTACCGTCCAATCTTACG
TTATCCCCGAAGATTTCAAATACGACGAGTGTCACCCCAGCAATGAGACT
TGTGAATACTGGTTGGTCATTCAAGAAAAGCTGACAATGATTTATGAAGG
AGATTTAATTTTAAGTCAGAATGGAACTTTGTATAAGTACGATGAAGATC
CCAACAACATCGCAACACAAGTAAGTTTCCTTTTTGTTAACGTGCCAACG
TCGATCTTACGTTCATATAACGTCCATAGACGTCCCAGCTTTTACATAAC
GTTTTTGGATATATATGAATGTCTAAACATGGGCATTACTTCACAATTAA
GTTTCCAACTCTTCTTTTTTTGTTAACGTGTCAACGTCGATCTTACGTTC
ATAAAATGTCCATAGCTTTTACATAACGTTTTTGATATATATGAATGTCC
AAACAAGGGCATTACTACACAAGTAAGTCTTGAATTCCAGTCCCTTTTTA
ACACCCATTATGCTCCTATAACGTTTTGGAGAACAACGTTTCATTCATTC
ATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAT
TCATTCTCTTTCAGATTCCGATGGACAAGGTTGTAACAGTTGATGGAGTG
CATCGAATGGTGATTGCAGTCAATCAATCCGTGCCAGGACCTCCTATTAT
TGCTTATGAAAACCAAAGAATTAGAGTACATGTCAGAAATTTCCTTTTGA
GGTAAGGAAGATATTGTAAATCAAACATGAGATTTAATTCTTTATTTCAT
CTTGAGCAGAATTACGTGTTATCGTGATTTAAATTTCAAGGCTTCTGGCT
TGAGTTTTAGACTATGTTCAAAAATTGTGGTTTTCGTTACGGATCAAGAA
TGTTCATATGAGTTTCGGAGCGTTTCGGAGAATGAAAACGGAGCAGTTTA
GCCAGTGCCTTCCCACAAACCAAATTTTTTCTTTGTTTTATGGTCAGTTA
CAATTTGAAGCGTTTGTCGAAAGTTATCGCACTACGATGGAGGGTGACGT
CGATACCGTGCGGAGTGCATAAAGGCGGGAAAACAAGGAACTCTAAAATA
AAGACTGAAATGGACAATCGAATAGGATTTCTTCATGGAGAGGTTGTGCG
TCAATGTCAAATCTAGTCTTAATTTTAGAGTTCGGTGCATAAAATCAAAA
CAAAAGTTCAAAACCCTGAAAAGGTTTTGAACATCAAATAAGTTATCATT
ACTGTTTGATACACTCACTATTGACCCACTCCAGTCTTTTAGAAACATTC
TAGTAATTCTAGTAATTCTGCAGCAGTATTTCAGTGGAAAAATGCTAAAT
TTAGCTCCAAACAGGCCCTTTAACAGCTCAATTGTTATATTGGTGTTAAA
ATAACTTGATTATGTAACTATTTCAAAAGAAGTTATGGAAGTTTTATACC
CAATCAAGCCTTTTACTTTGGTGTTTTGGCACTTATTGTCAATGGGAAAA
TACTAGGTGCTAAAAAAGTGCTCTAAAAAGGGCCCCACAATAGGAAAATA
TGGGCCTTTTAACAATAGGCTGTTTTAATTGCCATCCCTCTATGAGAATC
ATTGGTCAGATGACAACTTCCTGGGTTTTTAGCTCTGAGTTAGATCATTT
TCCGAAACACATGCAAATGCTAAAATTTGCTCCCAACCGGCCCCTACAAC
AGCTAGAATTTTGGAAAAAGAACGTTTTGGGGTCCTATCATCACTGCTAA
CATCACGTGAAAATTTCGGACCTCCAAGTTACCTCAATCAAAATTTAGCT
TTTTTGAAAATGCCCAAAACGAAACAATTAAAAAACGTAATTTTGTAGAG
ATGAGCTTGTATGTGTTTTGATATGAGTGTGTATGAAATGTTTTGAGTGT
AGATATGGATTTTAACTTTTTTTAATGTTTTTATATATTATTTCTTTTAG
ACCTGAAGATGGACATTATGTCCGAAATATATAGTCAAAAATAAAATAAT
ATTAATTGTTGGCTCAACTTTACTTGAATTAAAAAACATGTCCATATACT
TTTTCATAACTTCAGCCTGGGTTCCAGGCAAAAATTAGGTCCCCCTGAGT
TTGAAGTCCTCCCAAAGATTTATGAATTTTTTGTTAGCCCCCAGGACTTT
TGACCCTAGAGACTTTCAAAAAATTGATCCAGTAAAAAAGGGTTTTCCAA
TGTAAATTGCGTTCAGTTCTAAGTTTAAGATAAGATTCTATAAAAGTATT
GCGTCACAGGCGAAAATTTTTCAGATTCATGAGCTTCAATTTGAGTAATT
GAAGCCAACTGTTAAGCTGAATTATTTTAGCCCCCACATTGAGTGATGAG
ATTTTAGCTCCCCCAAGTACATAGGTCCTCCCAAAAAAGTGGTGTACTTC
CAGCCCCCTCTTTTTTTGGGAAAAATTTAGGGTGTAACCCCCTCCCCCCA
ACCAGCAGAGAGGGCTGACGCTTTGTTTTTATATAGAAACTCTTTTCACT
AGAAGATGAACAGAAATCTAATAACAAGAAAAATGCGAGTCTGCTAAACG
ACGTGTCCTACGTGCCCGCCTCAAGGTAAGCACGTCAAGGTACGCGAGCA
CGTATGCACGTGAGCACAAAGGCACGTAGGGTATTAAAAAATTGGCGTAA
GATCTTGATAGTTGATTTTAATCATGACTTTCTAAATTTAAAGTCTGGGA
TACAGGGACCAAGAAGTGATTGAAAATGTCATTTTCAAGGTTTGTGTAGG
GTTTCCTTAGTACTTTGGTACGATTGTAATTTATAATGATGTTCGGTAAA
TCATCTCTGTTAAGCGCAAGCTATTTCGTTCATCCTGGTGGTGATAATTT
CAATCTTTCTTTTGTTATCCAGTGATTCAGTGACATTACATTGGCATGGT
CAACATCAGCGAGGAACACCTTTTATGGATGGTATTGGTTACGTTTCACA
ATGTCCCATCGCTAGTGGTCAATCGTTCACCTATGAATTCAAGGTAATAT
AAGTTACGTTTTACAATGTCCCATCGCTAGTGGTCAATCGTTCACCTATG
AATTCAAGGTAATATAAGTTACGTTTTACAATGTCCCATCGCTAGTGGTC
AATCGTTCACCTATGAATTCAAGGTAATATAAGTTACGTTTCACAATGTC
CTATCGCTAGTGGTCAATCGTTCACCTATGAATTCAAGGTAATATAAGTT
ACGTTTCACAATGTCCCATCGCTAGTGGTCAATCGTTCACCTATGAATTC
AAGGTAATATAAGTTACGTTTCACAATGTCCCATCGCTAGTGGTCAATCG
TTCACCTATGAATTCAAGGTAATATAAATTACGTTTCACAATGTCTCATC
GCTAGTGGTCAATCGTTCACCTATGAATTCAAGGTAATATAAGTTACGTT
TTACAATGTCTCATCGCTAGTGGTCAATCGTTCACCTATGAATTCAAGGT
AATATAAGTTACGTTTCACAATGTCCCATCGCTAGTGGTCAATCGTTCAC
CTATGAATTCAAGGTAATATAAGTTACGTTTCACAATGTCCCATCGCTAG
TGGTCAATCGTTCACCTATGAATTCAAGGTAATATAAGTTACGTTTTACA
ATGTCCCATCGCTAGTGGTCAATCGTTCACCTATGAATTCAAGGTAATAT
AAGTTACGTTTCACAATGTCCCATCGCTAGTGGTCAATCGTTCACCTATG
AATTCAAGGTAATATAAGTTACGTTTCACAATGTCCCATCGCTAGTGGTC
AATCGTTCACCTATGAATTCAAGGTAATATAAGTTACGTTTCACAATGTC
CTATCGCTAGTGGTCAATCGTTCACCTGTGAATTCAAGGTAATATAAGTT
ACGTTTCACAATGTCCCATCGCTAGTGGTCAATCGTTCACCTATGAATTC
AAGGTAATTATTACGATGGATTACTTAACTAAACACATTTTTTTCTTTCT
TAGAACCCATTTTATAAGAAGATTTTAGGCTGAAATTCGTTGAAAAATTA
AGAACATCGTAAGAACATGCCCAGCCTCAGTTTGGCAAAAAATGACAAGA
AACTACAATTCTTTCCTCTTTTCAAGCAGTTTTAACCGAACTTAGGGACG
AATTTTCTAAAATCGAGAGTCAAATATTGTCCAAATTTTACCAATTTTAT
AAGTGCTCTTTATTTTGCACGATATTGTCGATTTAGAAAAGTCTGAAAAA
TTAAGAACGCATTTAAGAACATTATAGACTGAAAATTGCTAAAAAAAGTA
AGCACATCCAGGCTCAGCCAAATTCTAGGTGTTCTAGTTTTTGACCTATG
ATTAGTCAAACCCTATACTGTTTTATTAGGGTTTGGCAAGGTTAAAAACA
TAGAGAGCGATCTAGGGCCTTGAAATCTTATTTTCTGCACAAACCAGGCT
TTTGCTTAGCTTATGAATACTTTCCCCACCAAAAATTAATTTTCCTTGAA
GAATATTATTTTCAAACATCATACTTTCCAACACAGGCAGAACCAAAGGG
TACTTATTGGTATCACAGCCATGTTGGTGCACAGCGGAGTAATGGGGTGT
TTGGGGCGTTGATTATCAAAGAACGCCCTAAAGATGAAGAGAAAAAAGTT
CCAGTGGATGTTATCATGTCTATTGGTGATTGGCATCATACAAGTTCTGA
AGAAGTAAGAAATTTAATGGGATAAATTTTCGCGGGGATTAAATTTCGCG
GATTTCACAGATTTGGGTGAAACTAAGTCCGCGAAATACTTTTGAGAAAG
GCTCGAAAAATGTCAAATAGCTACTTTTAAAATATTTACTGGCATCAAAG
AAACCCTAATAATGCGTATTTCGACAACCAACATGCATAAATTTGGGTTA
AAAGGCACAAAATCGTGAAAATATTGTCTCCCTATATTGCTGTTCGCCAA
ATTAAGTCCCCGTGAAATCTCTTAACCACTAATTTTAATCCGCTAAATTT
CCTCCATTAAAGTACCTGTTTTTTTTCGTTGGCGAAGCATTGCATTTGAT
TATCAAGTTAAGTAACGTTGAATCCTCACCGCCATCTCTGGTGCAAGCTT
TCCAGAAAAATCGGCCTCTCAGCCTCCTTCATTAAAAAAAGACTAGGTTC
AAATCGCCAGTTTTTGAGTATACGGACGCGGTAGTACACATATAGTAATT
CGTCACAGTGAAAGAATTTTATAATTTAGACAAGAATAAAACTCCCCCTT
TTTGCAATTTTTTTTCGAAAAATAGACACTATCCTTTGAAGTGCTTTAAA
GCTAAAGGAGGTTCAAATATGATAAGTGGCAATGAAAACGCCACGTGATT
GCCAGGAACTTGGTACAACCTCTCCGAAACTCATTGAAAGGTGGAAAATA
AAAGATAACCATTTCTTTTATATATATCCCCTACATATATTTTGACCATT
CTTAAAAGTTTTATTTTAGTAGCATATCTTAATTTCATTCTTTCAAGGTG
TATATAAAAGCAGTTTACGGCAATTTTGTTGGTAAAAAAGCATATGAAGA
CACCAAGACTTTGGATGGTGGTAAATTCTCTGGTGTACCATGGAACAGTG
CTCTCATTGAAGGAAAAGGAAGATTCAAAAATGAACAAACTGGTACATAT
AACTAATTTAGCTCTAGTGTAGACGGCCGACTTTCTACCCTGCCTATTCT
AATTGTTAGAGTAGGCAGAAATCTTTGCTTGGAAAGGTTTGAAAGAAGAC
ATTTCATTGACGTCAAAAGAGGGCTATGCATCACTTTAGACAGCCCACTT
TATGCCCTCTTTAATTCACAATTAGAATAGGCAGGGCAAAAAGTGGGCCG
TCTAAACTAGGGCTTGTCTAAACTAAAGCTTATATTCCCTCGTGTTCTCT
CGTGATGAATATTGAAATCTTCATATATATTCATTATTGGAGTACTTGTA
GATAAACAAAATATCGAGTCGAATTTTCGAGATTCAATTTTATTTGGCAT
TATTTCGGGTGCTCTATATAATAAAATAGAATCCAAAATATAAAGAATAA
AACAGAGCCTCGAAAATATCCATATATTTCATCGTAGTTCAGTAAATTGA
TATGAATAAGCAAAATCTAACGTTTTTAACCTTTTCTTGAGATTTTGGTC
AACAAAGCCTTAGTGTTCTTATATAGTTTGTTCTTATATAAAAAAACCTG
TATGTTTCTTATCTATTACACAGGTGAAGACAACGGCGCACCTTTAACCT
GGTATCGTGTGAAAGAGGGAGCACAGTACCGCTTCCGTGTCATTGGTGTC
GGCTCTATGTATCCAATACGTATCTCAGTCGATCAGCATCCGATCATGGT
TATCGCCTCAGATGGTTATGATCTAAAGCCTATGATGGTTGAATCGTTCA
TTATCAACCCAGGGGAGCGTTTTGACTTTTTGATTAATGCAACTCAGTCG
GTTGGGAATTATTGGATACGCGGTGAAAGTATTGAGGTAGCTTTTAAAAC
TGTTCTCATTCCGTCTCAGACGAGTGACTATCTAAACGAACTTAGATGAA
ATAGCATTTCTGTCTTTAATTTTTAAAGTTTAGTTTTTCAGAATTTTAGT
ATAATTTAGATTTTTTGAAAATGATATGATCCGTCAAAAATGAAAACGCG
ACTGAAACAGTGTGAAATTTCTTCCCTTGATCTGTGACTGGACAGATACC
TCAAAGACCTTTCAGTGAAACGAGCTTTCTTTAAAATAAATTATCTCCCG
TACTCCTAAGTATGTATCCTCGAAAATTCTTATTTCATTGTCCTCTAGGT
TGGAGTTCAACACCATTCCGTAGAAGCTATTTTCAGTTATGAAGGAGCTA
ATAAAACAGAAGAGCCGAAAACAACAAAACGCCAATGTAGTTCTGATAAC
CCCTGTATCGTTGCCAACTGCCCTTTCTATTACTACTTCGACCAAGACAA
ACATTCGCATATCAAATGCAAGCTCATGTCCGACTTCGAAAACGCCGTTG
AAACACCTGCTCCTGTTTTTGATGAAACTTCACAAGAACATTTCATGAAT
TTCGCATTCCCTGGAGACGATGAACCCGGGGCAATCAATGGTCGTAAATT
CGAATTCCCAGGGGTGAACTCATTGTTTCAATCAGATGAAATTGACAATT
ATGATTGTTCGAAACACAAATGTGGAGACGGAGAAGTTTGTTATTGTCAT
TATGAATTAAACGTGCCTTATGACCACACTATCCAGATGGTATGGGTCAA
TAAAGGTAGCGGCGCCGGGTGGGGCCACCCGATTCACTTACACGGACATA
GCTTCTACGTCGTCAAAATGGCTTATACCCAACAAAACATGACAACAGGT
CTACTCCTTGGATCCAAAGGTGATTCCCTAGGGGAAAATCAAGATATCAC
GTGCAGTAATCCAAATGGGCGCCGTTTTTGTAATACAGCATCATGGAAAA
ATTCCACATGGGGAAAAAATAATATCCCCGGCTTGAACTTAAAGAATCCA
CCACGTAAAGACACATTGATTATTCCCACCGGTGGATATGCAGTGATCCG
CATCAGGACCGACAACCCTGGGAAATGGTTTTTACATTGCCACGTGGAGG
AACACATGTTAGACGGTATGGCAATGATCATTAACGAAGCTTCAGATCGA
GTACCAAAACCACCAGCTGGTTTCCCTATTTGCCAGAACTTCTATAATGA
TCCAACAAGAGATATGTCATACATCAGAGCTAAACGTAAGTACAATCAAA
CTCTTTTTGAGATACATAAACCATGATGGACCTCGTTTTCAAAATGTTTT
TTTATAAGAANCAAAATAGTAATGCCCAAAATGTGACGATTTAGCCCGAT
TTCTGAGAAAAATTATTTTCTAAATTTGGGCCCAATAAAAAAAGGGTTTT
TTGACTTTGTATGAAATTGCTTCATTAGTTTTTTCTGATTTTTGGCAGAA
AGATAGAGGGCATGATTCCCTATACATTGACTGAAACCTTTTTACCTGGA
TAATTTGTTCGTAAAAATTGGATTTTCGTTTTTGGGAAAAATTTGTTTCT
GTCATTTTTTTTTCAAGTTAGCACTTCTGATTATTCACTTTGCCATTTTT
CTTTCTATTTTTTCATTCAGGTAGGTCCATTCAGCATGTAGCTTGTTATA
TTAAAATGTGACTGAATGAAGGAATGATTTCATTTGAAAATGGTACTTAC
TTTGAACTGAATGAAAAATTGCAATGACCGCGAACCTCCGAATTTTGGCG
CTGCGCCTTTGCCTCTAGACCATTTCTCCATCATGGGAGTGCGCCTTCTT
ATCCCCCTTTTTCATGTTCATATTTTATTCACAGAGATCGAAGGAGAAGG
CGAAACATGTGTCCAAACCGATCTTTTCGTTGCTGTGTGTTGTGTGTTGG
GTGTTTTCGTTCTCATCCAATTCATAGTCATCGTTGTCCTGTGTATGAGA
AGCAAATCAAGAGCTGCTGTTGAAAACATTGCAATGAAATAATCACTGGT
GTGTGTTTTTAAACCTTAGAAAGGGCACCTTATGTGTGTAATATACAAAG
CAATGTCTCATAAACAACTTTCGTCTTAAAAGTGAAGAAATGGTGATTCT
TTTTATGATGTATGATATATATTCTTGACAATTTTTTTATGAAGTCTATG
TACACGAGTTAACTCTTTGGAGTTTTAGGCCTACGTTAGTACAGGTTTGA
AGCTTTTTGGACAATTTTAAAATCTTCATGATTTTTTTTTCTCATTTGTT
AGTAATATTTTAGAATTAGGATTTAATTTTTTCAGTCGCCCAGCCAATTT
TCACGCACCATTCTGTAACGATAATTTCGGCTACCGTTACCCAGCATTCA
ACGTTTTCTCAACGTTCATTTAATCTTCATAACGTCTATATAGCGTTAGA
TTAATGTTGAAACAACGTTATGCGGCAGCTGGGTAATGCTTTTTGAGTAC
CTTATATAAAAGAGGCAAATATTGTTTCCCCAGTGCGTGCTATTTTGTTC
GTGCGTGTTTTTTTAGAGTAAATCCTCTTTTAATATTTCATACAAACGAA
TTGTATATAGAATGATAATAGAAAATAAAACCAATATTATTGTTGTAATT
AATACCTGCAA

Coding sequence (CDS) from alignment at scaffold_372:183619..194529-

>TCONS_00062831 ID=TCONS_00062831|Name=TCONS_00062831|organism=Clytia hemisphaerica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_372:183619..194529- (Clytia hemisphaerica)
ATGTTGTTCCGCTGCATTCTTCTGGCAACAGCGTTCATTACCGTCCAATC
TTACGTTATCCCCGAAGATTTCAAATACGACGAGTGTCACCCCAGCAATG
AGACTTGTGAATACTGGTTGGTCATTCAAGAAAAGCTGACAATGATTTAT
GAAGGAGATTTAATTTTAAGTCAGAATGGAACTTTGTATAAGTACGATGA
AGATCCCAACAACATCGCAACACAAATTCCGATGGACAAGGTTGTAACAG
TTGATGGAGTGCATCGAATGGTGATTGCAGTCAATCAATCCGTGCCAGGA
CCTCCTATTATTGCTTATGAAAACCAAAGAATTAGAGTACATGTCAGAAA
TTTCCTTTTGAGTGATTCAGTGACATTACATTGGCATGGTCAACATCAGC
GAGGAACACCTTTTATGGATGGTATTGGTTACGTTTCACAATGTCCCATC
GCTAGTGGTCAATCGTTCACCTATGAATTCAAGGCAGAACCAAAGGGTAC
TTATTGGTATCACAGCCATGTTGGTGCACAGCGGAGTAATGGGGTGTTTG
GGGCGTTGATTATCAAAGAACGCCCTAAAGATGAAGAGAAAAAAGTTCCA
GTGGATGTTATCATGTCTATTGGTGATTGGCATCATACAAGTTCTGAAGA
AGTGTATATAAAAGCAGTTTACGGCAATTTTGTTGGTAAAAAAGCATATG
AAGACACCAAGACTTTGGATGGTGGTAAATTCTCTGGTGTACCATGGAAC
AGTGCTCTCATTGAAGGAAAAGGAAGATTCAAAAATGAACAAACTGGTGA
AGACAACGGCGCACCTTTAACCTGGTATCGTGTGAAAGAGGGAGCACAGT
ACCGCTTCCGTGTCATTGGTGTCGGCTCTATGTATCCAATACGTATCTCA
GTCGATCAGCATCCGATCATGGTTATCGCCTCAGATGGTTATGATCTAAA
GCCTATGATGGTTGAATCGTTCATTATCAACCCAGGGGAGCGTTTTGACT
TTTTGATTAATGCAACTCAGTCGGTTGGGAATTATTGGATACGCGGTGAA
AGTATTGAGGTTGGAGTTCAACACCATTCCGTAGAAGCTATTTTCAGTTA
TGAAGGAGCTAATAAAACAGAAGAGCCGAAAACAACAAAACGCCAATGTA
GTTCTGATAACCCCTGTATCGTTGCCAACTGCCCTTTCTATTACTACTTC
GACCAAGACAAACATTCGCATATCAAATGCAAGCTCATGTCCGACTTCGA
AAACGCCGTTGAAACACCTGCTCCTGTTTTTGATGAAACTTCACAAGAAC
ATTTCATGAATTTCGCATTCCCTGGAGACGATGAACCCGGGGCAATCAAT
GGTCGTAAATTCGAATTCCCAGGGGTGAACTCATTGTTTCAATCAGATGA
AATTGACAATTATGATTGTTCGAAACACAAATGTGGAGACGGAGAAGTTT
GTTATTGTCATTATGAATTAAACGTGCCTTATGACCACACTATCCAGATG
GTATGGGTCAATAAAGGTAGCGGCGCCGGGTGGGGCCACCCGATTCACTT
ACACGGACATAGCTTCTACGTCGTCAAAATGGCTTATACCCAACAAAACA
TGACAACAGGTCTACTCCTTGGATCCAAAGGTGATTCCCTAGGGGAAAAT
CAAGATATCACGTGCAGTAATCCAAATGGGCGCCGTTTTTGTAATACAGC
ATCATGGAAAAATTCCACATGGGGAAAAAATAATATCCCCGGCTTGAACT
TAAAGAATCCACCACGTAAAGACACATTGATTATTCCCACCGGTGGATAT
GCAGTGATCCGCATCAGGACCGACAACCCTGGGAAATGGTTTTTACATTG
CCACGTGGAGGAACACATGTTAGACGGTATGGCAATGATCATTAACGAAG
CTTCAGATCGAGTACCAAAACCACCAGCTGGTTTCCCTATTTGCCAGAAC
TTCTATAATGATCCAACAAGAGATATGTCATACATCAGAGCTAAACAGAT
CGAAGGAGAAGGCGAAACATGTGTCCAAACCGATCTTTTCGTTGCTGTGT
GTTGTGTGTTGGGTGTTTTCGTTCTCATCCAATTCATAGTCATCGTTGTC
CTGTGTATGAGAAGCAAATCAAGAGCTGCTGTTGAAAACATTGCAATGAA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039358XLOC_039358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062831-exon-scaffold_372-1575043694:194354..194529TCONS_00062831-exon-scaffold_372-1575043694:194354..194529Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:192460..192707TCONS_00062831-exon-scaffold_372-1575043694:192460..192707Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:191929..192065TCONS_00062831-exon-scaffold_372-1575043694:191929..192065Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:189687..189807TCONS_00062831-exon-scaffold_372-1575043694:189687..189807Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:188026..188193TCONS_00062831-exon-scaffold_372-1575043694:188026..188193Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:187088..187232TCONS_00062831-exon-scaffold_372-1575043694:187088..187232Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:186244..186506TCONS_00062831-exon-scaffold_372-1575043694:186244..186506Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:184995..185931TCONS_00062831-exon-scaffold_372-1575043694:184995..185931Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1575043694:183619..184395TCONS_00062831-exon-scaffold_372-1575043694:183619..184395Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:194354..194529TCONS_00062831-exon-scaffold_372-1510915933:194354..194529Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:192460..192707TCONS_00062831-exon-scaffold_372-1510915933:192460..192707Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:191929..192065TCONS_00062831-exon-scaffold_372-1510915933:191929..192065Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:189687..189807TCONS_00062831-exon-scaffold_372-1510915933:189687..189807Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:188026..188193TCONS_00062831-exon-scaffold_372-1510915933:188026..188193Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:187088..187232TCONS_00062831-exon-scaffold_372-1510915933:187088..187232Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:186244..186506TCONS_00062831-exon-scaffold_372-1510915933:186244..186506Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:184995..185931TCONS_00062831-exon-scaffold_372-1510915933:184995..185931Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1510915933:183619..184395TCONS_00062831-exon-scaffold_372-1510915933:183619..184395Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:194354..194529TCONS_00062831-exon-scaffold_372-1491911889:194354..194529Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:192460..192707TCONS_00062831-exon-scaffold_372-1491911889:192460..192707Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:191929..192065TCONS_00062831-exon-scaffold_372-1491911889:191929..192065Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:189687..189807TCONS_00062831-exon-scaffold_372-1491911889:189687..189807Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:188026..188193TCONS_00062831-exon-scaffold_372-1491911889:188026..188193Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:187088..187232TCONS_00062831-exon-scaffold_372-1491911889:187088..187232Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:186244..186506TCONS_00062831-exon-scaffold_372-1491911889:186244..186506Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:184995..185931TCONS_00062831-exon-scaffold_372-1491911889:184995..185931Clytia hemisphaericaexon
TCONS_00062831-exon-scaffold_372-1491911889:183619..184395TCONS_00062831-exon-scaffold_372-1491911889:183619..184395Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062831-proteinTCONS_00062831-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:183619..194529 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09162	1.03918	0.785076	0.302306	1.14285	0.806968	0.701727	1.20547	0.627543	0.885922	0.55298	0.363507	4.94343	5.355	2.47944	2.73814	2.04866	2.30983	6.11354	8.03385	1.84703	1.43946	2.80866	2.55999	4.10207	4.89678	0	0.496817	0.605839	1.85167
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011707Cu-oxidase_3
IPR008972Cupredoxin
IPR011706Cu-oxidase_2
IPR001117Cu-oxidase
IPR033138Cu_oxidase_CS
IPR002355Cu_oxidase_Cu_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005507copper ion binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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