TCONS_00063800 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063800
Unique Name	TCONS_00063800
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	369

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_400:238641..244046+

transcript sequence

>TCONS_00063800 ID=TCONS_00063800|Name=TCONS_00063800|organism=Clytia hemisphaerica|type=transcript|length=369bp
CATAATAAGACGACCAGCTCCTTTGCTACCAGACGGTTTTAGGCatctca
aaattgacaatttcataatATTGAAGAGGAGAATGACACAGCACatatct
ataaaaGTAAGTTTCTCGAATCTTTGGTAATATGGGTTCATTTGGAATAT
CTCTATCCCTCCTATTTTTCGTTTCGGAACCTGACCCTGTGACAGatttg
tatgagaaaggcaaccgcatacactttatttaaaacttttggctgaaact
ctaaatcaagctttgaaaataaaagtactGACTTTCTACCACAACAGTTT
TGGAATGNgctTTGAAAATAAAACTACTGACTTTCTACCACAACAGTTTT
GGAATGTTGTTGATTTCGG

Run BLAST on NCBI

transcript from alignment at scaffold_400:238641..244046+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063800 ID=TCONS_00063800|Name=TCONS_00063800|organism=Clytia hemisphaerica|type=transcript|length=5406bp|location=Sequence derived from alignment at scaffold_400:238641..244046+ (Clytia hemisphaerica)
CATAATAAGACGACCAGCTCCTTTGCTACCAGACGGTTTTAGGCatctca
aaattgacaatttcataatATTGAAGAGGAGAATGACACAGCACATATCT
ATTAAAGTACGTTTCTCGAATCTTTGGTAATTTTGGTTCATTTGGAACAT
CTCTATCTCTCCTATTTTTCGTTCGGAACCTGACCCTGTGACAGATCTGT
ATGATaaaggcaactgcatacactttattTAAAACTATTGGCTGAAACTC
TTAAGCAAGCTTTGAAAATAGAACTACTGACTTTCTACCACAACAGTTTT
GGAATATTGTTGATTTCGGGGTGCTAATTTTGGCTGATTGTTCAattttt
cccatgttcaaaataCGAACCTTGGaaacatactctttcttattcaaata
agaaaatgatctgttatgattTATTAAACaaccttccaaaaacaatatGT
AACACATATTACCAAAGCAACTCAGTAAACTCTGTGTCATTGAGGCCCTG
AAGTTAACAATATACCATATAAATCAATTACATCAGTATTTAGCATTCCA
ATGAAAAGCTTGCAATATTCGAGTTTTCATTTCTGAAAGTGAtgtctttt
tctaacttttctagAGACACTCACCTGAAAAAGcctttaatttgtaaaaa
ttttgctCCCACGTGATAAACCTTGTTTGCGAATGgataaataaactttt
aaaaactatgGGGACTTTTTTATCCCAAAAACGATTCATcctttctatgt
ttatcaaaaacAGTGTGCTTTTCTGGCTTttcttctcaattttatttAGG
GTGATAGACGTCAATAGGAATGATCAACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAACTTGACAATTTCATAATATTGAAGAGGAGAATG
ACACAGcacatatctataaaagtaAGTTTCTCGAATCTTTGGTAATATTG
GTTCATGTGGAATATCTCTATCCCTCCTATTTTTCGTTTCGGAACCTAAC
CCTGTGACAGATTTGTATGAGaaggcaactgcatacactttatttaaaac
ttttggaTGAAACTCTAAagcaagctttgaaaataaaactactGACTTTC
CACCACAACAGTTTTGGAATGTTGTTGATTTCTGGGTGctatttttggct
gattgttTCATTTATCCCATGTTTAAAAtacgaaccgtggaaacatactc
tttcttattcaaataagaaaatgatctgttataatttattaaacaatctt
ccaaaaacaataTGTAACACATATTACCAAANNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNACAATATACCATATAAATCAATTACATCA
GTATTTAGCATTCCAATGAAAAGCTTGCAATAttcgagttttcatttttg
aaagtgatgtctttttctaacttttctaaAGAAACTCGCCCGAAAaagca
ttttatttgtaaaaacggTGCTCCCACATGATGAACCTTGCTTGCGAATT
cataaataaacttttaaaaaatatggCAATTTTTTTATCCTAAAATGATT
TAGCTGTTCTATATTTGTCAAAGACAGTCTGCTTTTCTggcttttctttt
taattttatttagggTGATAGACGTCAATAGGAATGATCAACATCAAATA
GATTTTGCTCAGAAAAGTATCCGAACGAGGAATGACGATAGTTCATAATA
AGACGACCAGCTCCTTTGATATCAGGCGGTTTTAGNATCAAATAGATTTT
GCTCAGAAAAGTATACGAACGAGGAATGACGATAGTTCATAATAAGACGA
CCAGCTCCTTTGATATCAGGCGGTTTTAGGCatctcaaaattgacaattt
cataatATCGAAGAGGACAATGACACAGCACATATCTATAAAGGTAAGTT
TCTCGAATCTTTGGTAATATGGGTTCATTTGGAATATCTCTATCCCTCCT
ATTTTTCGTTTCGGAACCTGACCCTGTGACAGatttgtatgagaaaggca
accgcatacactttatttaaaacttttggctgaaactctaaatcaagctt
tgaaaataaaagtactGACTTTCTACCACAACAGTTTTGGAATGNgctTT
GAAAATAAAACTACTGACTTTCTACCACAACAGTTTTGGAATGTTGTTGA
TTTCGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039996	XLOC_039996	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00063800-exon-scaffold_400-1491911889:238641..238734	TCONS_00063800-exon-scaffold_400-1491911889:238641..238734	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1510915933:238641..238734	TCONS_00063800-exon-scaffold_400-1510915933:238641..238734	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1575043694:238641..238734	TCONS_00063800-exon-scaffold_400-1575043694:238641..238734	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1491911889:239600..239611	TCONS_00063800-exon-scaffold_400-1491911889:239600..239611	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1510915933:239600..239611	TCONS_00063800-exon-scaffold_400-1510915933:239600..239611	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1575043694:239600..239611	TCONS_00063800-exon-scaffold_400-1575043694:239600..239611	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1491911889:243784..244046	TCONS_00063800-exon-scaffold_400-1491911889:243784..244046	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1510915933:243784..244046	TCONS_00063800-exon-scaffold_400-1510915933:243784..244046	Clytia hemisphaerica	exon
TCONS_00063800-exon-scaffold_400-1575043694:243784..244046	TCONS_00063800-exon-scaffold_400-1575043694:243784..244046	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_400	supercontig	scaffold_400:238641..244046 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77699	1.59226	4.02502	4.1756	0.299023	0.472584	0.285076	0.266885	0	0.462894	0.845244	0.605579	0.48184	0	0.178802	0.439313	1.29744	0	1.16095	1.01471	0.774995	0.00965262	0.254238	0.793748	0	0.21247	0.608088	0.324484	0	0.592163

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00063800 vs. Swiss-Prot (Human)

BLAST of TCONS_00063800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00063800 (transcript) - C. hemisphaerica