TCONS_00065193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065193
Unique NameTCONS_00065193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065193 ID=TCONS_00065193|Name=TCONS_00065193|organism=Clytia hemisphaerica|type=transcript|length=831bp
ATTTGTTTTAATTACAACTTAACCTAATTTGCTGATGAATTATATTTGTT
GACACCTGGGACTTCCGTGTGGTCTTAGGAACTATCAAGATCATTAGCCC
AATAAACGACCTCGGAGAATGGTATAAATACTACACTAAATGAACTGCAA
AAGACAGCAACCTTTTTGGATCAACAAGAAGAACAAGATAGTCAAATAAC
ATTGATAAAGAGCACAATGATGAAACTCGCAAGTGTTTTGGTCTTTTTGG
CCGTTGCATCTTCCATCGAAGCAGGTTATGTCAACCGAGTGGTCATAAGA
TCGTACAGGTCGACTTATCTCCTTGTAAGGTCACCACCATTGAATATGCA
CCAAGCTAAACACGCATGCGCAAGATTTGGAGGTTTCTTGGCAACTATCA
ATAATCAACGAGAGCACCACTTTTTGGTTGCTAAATTACAGCACTATAAT
ATTCGTTCCGCTTGGGTCGGATTGAACGACAAAGCTAACGAAAAAGTCTT
CAGGTGGGATGGTTCAAATGTCGCAGGATTCAAGAAATGGTGTCCACATG
AACCAAACAATTTTCGATATGGTGAAGACTGCGTTGAGTTACTTGGTCCC
GTCAATTACAAATGTTTGAACGACCTTCCATGCACACGTGTTTTACCGTA
CATCTGTGAAGTCGCAAGAAGATCTTACTAATAATTTCACGCTGATTAAA
ACATcaaataaactttgtttttattttttaaattttgaatgtAGTAACAT
TGTAAGATTACTCGTTAATCACaaaatggaaataaaaaaattcattatgC
ATGAATCTTAAACGAACATTTTAGATAACTT
Run BLAST on NCBI

protein sequence of TCONS_00065193-protein

>TCONS_00065193-protein ID=TCONS_00065193-protein|Name=TCONS_00065193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MMKLASVLVFLAVASSIEAGYVNRVVIRSYRSTYLLVRSPPLNMHQAKHA
CARFGGFLATINNQREHHFLVAKLQHYNIRSAWVGLNDKANEKVFRWDGS
NVAGFKKWCPHEPNNFRYGEDCVELLGPVNYKCLNDLPCTRVLPYICEVA
RRSY
Run BLAST on NCBI

transcript from alignment at scaffold_433:53739..55718-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065193 ID=TCONS_00065193|Name=TCONS_00065193|organism=Clytia hemisphaerica|type=transcript|length=1980bp|location=Sequence derived from alignment at scaffold_433:53739..55718- (Clytia hemisphaerica)
ATTTGTTTTAATTACAACTTAACCTAATTTGCTGATGAATTATATTTGTT
GACACCTGGGACTTCCGTGTGGTCTTAGGAACTATCAAGATCATTAGCCC
AATAAACGACCTCGGAGAATGGTATAAATACTACACTAAATGAACTGCAA
AAGACAGCAACCTTTTTGGATCAACAAGAAGAACAAGATAGTCAAATAAC
ATTGATAAAGGTAATACATTTTGTTCAGTGTACGTTAGTTCAATGAAAGG
AAAAATATTTTGATACTTTTACACAGCCTTGTTCAATGCGTATTATCGGC
CTTTTTATGCTTACTGATAGCGTCAGATAATACTCTCTGGTGTCCATCAG
TAGCGTAAATAAAGCCTGGAATACACGGGGACGAAATCGACTTTGACATG
CATCTAATTCTCTAGTACCATAACGGGCCTTCAGCACAACCTTGTCTAAA
AGAGTTCTTTATACTATGGCTTCATGAAAATATCTTCACAGTGAATTAAA
AATTTGATTTCAAGCTTTTTTCTTTTCACTTTCATTTTCCACAGAGCACA
ATGATGAAACTCGCAAGTGTTTTGGTCTTTTTGGCCGTTGCATCTTCCAT
CGAAGCAGGTTATGTCAACCGAGGTAAGAAATCAAATTTTATTAACAAAG
ATAATGAGACTGCCCTGAATATGTGCGCTACAAAAGAATCCTACCATGCG
GTCAGTTGTACACACATACTGATCACTGCTTTTTTACCTAAGCATCCATC
CAGAGGATTGGTAATGAGTGAAACGGTGTAATAATTTTATTTCTTTTTCA
TCAAAAACCAACAGTGGTCATAAGATCGTACAGGTCGACTTATCTCCTTG
TAAGGTCACCACCATTGAATATGCACCAAGCTAAACACGCATGCGCAAGA
TTTGGAGGTTTCTTGGCAACTATCAATAATCAACGAGAGCACCACTTTTT
GGTTGCTAAATTACAGTAAGTAGAATACAAAATGCAAAACATTGAAAATA
AAGATTAAAAATTAATGTCTCCCATTCCGAAGAGTTAAAAAATCAGACTT
CTGCATTAACACGCATGCGTGATTTGTCGTTCTTTTAGACCACATGTAGT
TAATTCCCGTGATAAAGGATTGGGAATGAATCGGTAGGGTTGGTTCAGTC
ACTTTTCAGTCGGGGTTGTGGACGGCCAAAAGTAGACTTTTTTTATTCTT
CCTTTTTGACCCTTTCGATATTTTCGATTTTTGATTATTTCGATCTTATC
AGTTAGGGTCAGGGTTGGAGCTCGAAACATTGCGTCATTATTTAGATGAT
CTGTAAAGTGTAGAAGAGGCTTTCTGGGGGAAATTTTATACTCTTCGGAA
TAGGACCTTCTGGGACCTTTCACCCTCTCATAAGCAGGGTGCTAATTCTA
AATTGCTAGAGGCCGGAACAAAATAGTCTTTAAGCAAAATAGACCTAACT
TCCTTTTCTAAGTTGATTACAATCAGTCATACGATGATTAGACATGAAAT
TGGTCGTATTGTATCATTAAATAATTTGCTTTAATTATTCACTTCTAAAA
TCGTGTAGCTTAATATTTCTCATTCTTATTTTCACAAAGGCACTATAATA
TTCGTTCCGCTTGGGTCGGATTGAACGACAAAGCTAACGAAAAAGTCTTC
AGGTGGGATGGTTCAAATGTCGCAGGATTCAAGAAATGGTGTCCACATGA
ACCAAACAATTTTCGATATGGTGAAGACTGCGTTGAGTTACTTGGTCCCG
TCAATTACAAATGTTTGAACGACCTTCCATGCACACGTGTTTTACCGTAC
ATCTGTGAAGTCGCAAGAAGATCTTACTAATAATTTCACGCTGATTAAAA
CATCAAATAAACTTTGTTTTTATTTTTTAAATTTTGAATGTAGTAACATT
GTAAGATTACTCGTTAATCACAAAATGGAAATAAAAAAATTCATTATGCA
TGAATCTTAAACGAACATTTTAGATAACTT

Coding sequence (CDS) from alignment at scaffold_433:53739..55718-

>TCONS_00065193 ID=TCONS_00065193|Name=TCONS_00065193|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_433:53739..55718- (Clytia hemisphaerica)
ATGATGAAACTCGCAAGTGTTTTGGTCTTTTTGGCCGTTGCATCTTCCAT
CGAAGCAGGTTATGTCAACCGAGTGGTCATAAGATCGTACAGGTCGACTT
ATCTCCTTGTAAGGTCACCACCATTGAATATGCACCAAGCTAAACACGCA
TGCGCAAGATTTGGAGGTTTCTTGGCAACTATCAATAATCAACGAGAGCA
CCACTTTTTGGTTGCTAAATTACAGCACTATAATATTCGTTCCGCTTGGG
TCGGATTGAACGACAAAGCTAACGAAAAAGTCTTCAGGTGGGATGGTTCA
AATGTCGCAGGATTCAAGAAATGGTGTCCACATGAACCAAACAATTTTCG
ATATGGTGAAGACTGCGTTGAGTTACTTGGTCCCGTCAATTACAAATGTT
TGAACGACCTTCCATGCACACGTGTTTTACCGTACATCTGTGAAGTCGCA
AGAAGATCTTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040870XLOC_040870Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065193-proteinTCONS_00065193-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065193-exon-scaffold_433-1575043694:55509..55718TCONS_00065193-exon-scaffold_433-1575043694:55509..55718Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1575043694:55096..55174TCONS_00065193-exon-scaffold_433-1575043694:55096..55174Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1575043694:54754..54904TCONS_00065193-exon-scaffold_433-1575043694:54754..54904Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1575043694:53739..54129TCONS_00065193-exon-scaffold_433-1575043694:53739..54129Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1510915933:55509..55718TCONS_00065193-exon-scaffold_433-1510915933:55509..55718Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1510915933:55096..55174TCONS_00065193-exon-scaffold_433-1510915933:55096..55174Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1510915933:54754..54904TCONS_00065193-exon-scaffold_433-1510915933:54754..54904Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1510915933:53739..54129TCONS_00065193-exon-scaffold_433-1510915933:53739..54129Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1491911889:55509..55718TCONS_00065193-exon-scaffold_433-1491911889:55509..55718Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1491911889:55096..55174TCONS_00065193-exon-scaffold_433-1491911889:55096..55174Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1491911889:54754..54904TCONS_00065193-exon-scaffold_433-1491911889:54754..54904Clytia hemisphaericaexon
TCONS_00065193-exon-scaffold_433-1491911889:53739..54129TCONS_00065193-exon-scaffold_433-1491911889:53739..54129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:53739..55718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.58554	0.472959	0.97395	0.821378	0.384596	0.668608	1.31997	2.47148	248.478	144.352	6.68557	84.6941	0.227606	0.433347	1.32674	0.208545	0	0.0877748	0.303164	0	0	0	0.225501	0.0733931	0.183718	0.218619	0.234632	0.0873015	0.0633079	0.129002
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
[Close]
BLAST of TCONS_00065193 vs. Swiss-Prot (Human)
Match: MRC2 (C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.134e-16
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:  343 NMHQAKHACARFGGFLATINNQREHHFLVAKLQHYNIRSAWVGLNDKANEKVFRWDGSNVAGFKKWCPHEPNNFRYG-EDCVELLGPVNYKCLNDLPCTRVLPYICEVA 666
            +  ++K AC R GG L +I++  E  F+  +++   +   W+GLND   +  F W   ++  F  W P EPNNFR   EDCV + GP      ND PC + LP IC+ A
Sbjct:  402 SWQESKKACLRGGGDLVSIHSMAELEFITKQIKQ-EVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGR--WNDSPCNQSLPSICKKA 507
The following BLAST results are available for this feature:
BLAST of TCONS_00065193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRC23.134e-1637.61C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 ... [more]
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