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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065402 ID=TCONS_00065402|Name=TCONS_00065402|organism=Clytia hemisphaerica|type=transcript|length=2694bp
CTTTTGGATTACCACTCCCAAGACTTCAGTTTTCTTAGGGGATCCATCCA
ACTCAGGCTTGCCATAAAACATTGTTGATTGGACGTTATATTTAACAACC
CAGAATAAGCTTACACCATTGTGAGGGAGTGGCAAAAATGTGTAacccat
actttaaaaaaaacatatattaaGCACCTAAAAGCAGATTATTCCTAAAG
AGCAAGCTGCAAACACTTTTTAATCTTCTAGGTATTGTAGAAGTGATCTT
GCGATCGCGGTGGGTGTCGTTGTTGATCCGGGTATCAGGCTATTTCCAAT
GCTATGAccaatttttaaagcttttaggACACAAACTAAACAATCTATTG
GGCCTGGCTATAAATAGCCTGGCTGGAATCGATATCACAGCACATTCTAG
TAACTATTCATTCATGATACTTTATAgcaccctgaaaatttcatttcaaa
caaTGATCCTATCAAAATTTAGAAGGCAAAAACCCAATTTCCTTAACAGT
CAGGGCTTCCTCAGCCTCCAGAGGCTGGGTTTGTCCAGGTCTAAGATAGT
AGAGTTGCATAAACCAAGACAAATTTCGTTAATGTCATAGAAGCTATACG
TCTTTGGGGGATGTCATCAGGGCGCAGTCCTTTCTAATTTCAAGCTCTTT
TCTGGATTTTTCATACTCCTCTATTGTGAATTCCTTGTCGTTGATTTCAA
CATCATCATGTCAATTTGTTTGTCCTGATCTTCAACATCACCAGGCTGTT
TACCTTGAATGTTCTGGAAAAGATTGAACCACGTACGTACTCGTGCTTTT
GGACTGGAACCAGCAACCTGCcctttctttgactttttctgTTACCGGAT
ATTTTGTGTATCATCTTCCAGGCCTCCCCATATATTGATGAGTATCATGA
AGATTTTCTAGctgaacttttttttcttcctctgtttttgaattttctct
ggtgctttttataaaatgttCCTCCTGCTAGAACCAAATTTTTGGTAGTT
TGACATATTTCCGAAAAAGACATACACTTTTCACATTGAAACAGATTAAC
ATTTAATAATCAATACCTGCTGTAATCTGTCATGTTTTTGTTTCCTGAAT
TAACAAAAAATCTTTCTATTACTTGGTTTGGAAAactacacccctgtttc
acatcTCAGGTGGAACTTTTATTTCCAGTGGGGCTTGGGTCCCAGCAGGT
CTTTGACACAGGGTTCTGAAATATGGACAAAATCAATAATGGGAGTGCTT
TGTAAGtatattataacaaattttaattaaataaACTATTAGTTTATACA
GCTTAAAAAAACATAATGGCAACAGCACAAGCCCAACGTGAAGAAGTAGA
GGAGATGGAGGATGACGGGGGTCCGATCCTCATCAACAAATTGGAACAAC
ATGGTATCAGTGCTTCTGATATAAAAAAGTTAAGTGAGGCTGGTTACTAT
ACCATAGAATCTTTGGCATATACACCAAAGAAGACATTGTTGGCCATCAA
GGGGATCAGTGAAGCTAAAGCTGACAAAATATTGAACGAAGTTTTGAAAT
TAGTACCCATGGGGTTTACAACAGCCACAGAGTTTCATCAGAAACGTTCT
GAGATTATTCAAGTGACAACTGGTTCTAAAGAACTTGATAAACTGTTACA
AGGTGGTATTGAGACTGGCTCCATCACAGAGATATTTGGAGAATTCAGAA
CTGGTAAAACACAGATATGTCATCAGTTATGTGTTACTTGTCAACTACCT
GTTGACTGTGGAGGTGCTGAGGGAAAAGCTATGTATGTGGACACCGAAGG
TACATTTCGTCCTGAAAGACTGTTAGCCGtagctgaaaaatataaacTGA
ATGGGCAGGAAGTTTTAGACAATGTTGCTTATGCCAGAGCTTATAACTCA
GATCACCAGACACAGCTCTTAATCCATGCCTCAGCTATGATGTCAGAATC
GAGATATGCGTTACTGATCGTGGATAGTGCAACTGCTTTATACAGAACTG
ACTATGCAGGCCGAGGTGAACTATCAGCCCGGCAAATGCATATGGCTAGA
TTTTTGCGTACACTCTTGGGTCTAGCTGATCAGTATGGTGTTGCTGTTGT
TATCACCAACCAGGTTGTGGCCCAAGTTGATGGCGCATCAATGTTCCAAG
CTGATCCTAAGAAACCAATCGGTGGAAACATCATGGCACATGCCTCAACA
ACTAGACTTTATTTACGTAAAGGACGTGGTGAAACAAGAATCTGTAAGAT
CTATGATTCACCCTGTCTACCTGAAGCAGAGGCCATGTTTGCCATTTATC
CTGATGGGATTGGGGATAGTAAAgactaattttcatttttcttgtaCTGT
TTTTCGNGGGATTGGGGATAGTAAAGACTAATTTTCATCTTTCTTGTGCA
GTTTTTCTTTACTCAGGGGTCTTTCTGAGAATAATTTCAGTAGtattcat
tttaattttggctTTTGCCTTTCGCcctcttttgaaattttaagattttc
gtTTTTATATCCTCTGGGAGGAAATGCTGtacaattttaatgaaaatagc
CTGCATCCTTCAATTGATCtcgttaaatataatttttgattactgttctt
tcttttgtaaatattgatattttatgGTGACATAAACCCACGCAATATAT
TGGTTAATGggatgtttttttgaaatatattcttttacaTACCT Run BLAST on NCBI transcript from alignment at scaffold_439:139743..142436- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065402 ID=TCONS_00065402|Name=TCONS_00065402|organism=Clytia hemisphaerica|type=transcript|length=2694bp|location=Sequence derived from alignment at scaffold_439:139743..142436- (Clytia hemisphaerica)
CTTTTGGATTACCACTCCCAAGACTTCAGTTTTCTTAGGGGATCCATCCA
ACTCAGGCTTGCCATAAAACATTGTTGATTGGACGTTATATTTAACAACC
CAGAATAAGCTTACACCATTGTGAGGGAGTGGCAAAAATGTGTAACCCAT
ACTTTAAAAAAAACATATATTAAGCACCTAAAAGCAGATTATTCCTAAAG
AGCAAGCTGCAAACACTTTTTAATCTTCTAGGTATTGTAGAAGTGATCTT
GCGATCGCGGTGGGTGTCGTTGTTGATCCGGGTATCAGGCTATTTCCAAT
GCTATGACCAATTTTTAAAGCTTTTAGGACACAAACTAAACAATCTATTG
GGCCTGGCTATAAATAGCCTGGCTGGAATCGATATCACAGCACATTCTAG
TAACTATTCATTCATGATACTTTATAGCACCCTGAAAATTTCATTTCAAA
CAATGATCCTATCAAAATTTAGAAGGCAAAAACCCAATTTCCTTAACAGT
CAGGGCTTCCTCAGCCTCCAGAGGCTGGGTTTGTCCAGGTCTAAGATAGT
AGAGTTGCATAAACCAAGACAAATTTCGTTAATGTCATAGAAGCTATACG
TCTTTGGGGGATGTCATCAGGGCGCAGTCCTTTCTAATTTCAAGCTCTTT
TCTGGATTTTTCATACTCCTCTATTGTGAATTCCTTGTCGTTGATTTCAA
CATCATCATGTCAATTTGTTTGTCCTGATCTTCAACATCACCAGGCTGTT
TACCTTGAATGTTCTGGAAAAGATTGAACCACGTACGTACTCGTGCTTTT
GGACTGGAACCAGCAACCTGCCCTTTCTTTGACTTTTTCTGTTACCGGAT
ATTTTGTGTATCATCTTCCAGGCCTCCCCATATATTGATGAGTATCATGA
AGATTTTCTAGCTGAACTTTTTTTTCTTCCTCTGTTTTTGAATTTTCTCT
GGTGCTTTTTATAAAATGTTCCTCCTGCTAGAACCAAATTTTTGGTAGTT
TGACATATTTCCGAAAAAGACATACACTTTTCACATTGAAACAGATTAAC
ATTTAATAATCAATACCTGCTGTAATCTGTCATGTTTTTGTTTCCTGAAT
TAACAAAAAATCTTTCTATTACTTGGTTTGGAAAACTACACCCCTGTTTC
ACATCTCAGGTGGAACTTTTATTTCCAGTGGGGCTTGGGTCCCAGCAGGT
CTTTGACACAGGGTTCTGAAATATGGACAAAATCAATAATGGGAGTGCTT
TGTAAGTATATTATAACAAATTTTAATTAAATAAACTATTAGTTTATACA
GCTTAAAAAAACATAATGGCAACAGCACAAGCCCAACGTGAAGAAGTAGA
GGAGATGGAGGATGACGGGGGTCCGATCCTCATCAACAAATTGGAACAAC
ATGGTATCAGTGCTTCTGATATAAAAAAGTTAAGTGAGGCTGGTTACTAT
ACCATAGAATCTTTGGCATATACACCAAAGAAGACATTGTTGGCCATCAA
GGGGATCAGTGAAGCTAAAGCTGACAAAATATTGAACGAAGTTTTGAAAT
TAGTACCCATGGGGTTTACAACAGCCACAGAGTTTCATCAGAAACGTTCT
GAGATTATTCAAGTGACAACTGGTTCTAAAGAACTTGATAAACTGTTACA
AGGTGGTATTGAGACTGGCTCCATCACAGAGATATTTGGAGAATTCAGAA
CTGGTAAAACACAGATATGTCATCAGTTATGTGTTACTTGTCAACTACCT
GTTGACTGTGGAGGTGCTGAGGGAAAAGCTATGTATGTGGACACCGAAGG
TACATTTCGTCCTGAAAGACTGTTAGCCGTAGCTGAAAAATATAAACTGA
ATGGGCAGGAAGTTTTAGACAATGTTGCTTATGCCAGAGCTTATAACTCA
GATCACCAGACACAGCTCTTAATCCATGCCTCAGCTATGATGTCAGAATC
GAGATATGCGTTACTGATCGTGGATAGTGCAACTGCTTTATACAGAACTG
ACTATGCAGGCCGAGGTGAACTATCAGCCCGGCAAATGCATATGGCTAGA
TTTTTGCGTACACTCTTGGGTCTAGCTGATCAGTATGGTGTTGCTGTTGT
TATCACCAACCAGGTTGTGGCCCAAGTTGATGGCGCATCAATGTTCCAAG
CTGATCCTAAGAAACCAATCGGTGGAAACATCATGGCACATGCCTCAACA
ACTAGACTTTATTTACGTAAAGGACGTGGTGAAACAAGAATCTGTAAGAT
CTATGATTCACCCTGTCTACCTGAAGCAGAGGCCATGTTTGCCATTTATC
CTGATGGGATTGGGGATAGTAAAGACTAATTTTCATTTTTCTTGTACTGT
TTTTCGNGGGATTGGGGATAGTAAAGACTAATTTTCATCTTTCTTGTGCA
GTTTTTCTTTACTCAGGGGTCTTTCTGAGAATAATTTCAGTAGTATTCAT
TTTAATTTTGGCTTTTGCCTTTCGCCCTCTTTTGAAATTTTAAGATTTTC
GTTTTTATATCCTCTGGGAGGAAATGCTGTACAATTTTAATGAAAATAGC
CTGCATCCTTCAATTGATCTCGTTAAATATAATTTTTGATTACTGTTCTT
TCTTTTGTAAATATTGATATTTTATGGTGACATAAACCCACGCAATATAT
TGGTTAATGGGATGTTTTTTTGAAATATATTCTTTTACATACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065402-exon-scaffold_439-1575043694:139743..142436 | TCONS_00065402-exon-scaffold_439-1575043694:139743..142436 | Clytia hemisphaerica | exon |
| TCONS_00065402-exon-scaffold_439-1510915933:139743..142436 | TCONS_00065402-exon-scaffold_439-1510915933:139743..142436 | Clytia hemisphaerica | exon |
| TCONS_00065402-exon-scaffold_439-1491911889:139743..142436 | TCONS_00065402-exon-scaffold_439-1491911889:139743..142436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:139743..142436 - |
Blast
BLAST of TCONS_00065402 vs. Swiss-Prot (Human)
Match: RAD51 (DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1 SV=1) HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0 Identity = 267/323 (82.66%), Postives = 297/323 (91.95%), Query Frame = 2
Query: 1358 EDDGGPILINKLEQHGISASDIKKLSEAGYYTIESLAYTPKKTLLAIKGISEAKADKILNEVLKLVPMGFTTATEFHQKRSEIIQVTTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHQLCVTCQLPVDCGGAEGKAMYVDTEGTFRPERLLAVAEKYKLNGQEVLDNVAYARAYNSDHQTQLLIHASAMMSESRYALLIVDSATALYRTDYAGRGELSARQMHMARFLRTLLGLADQYGVAVVITNQVVAQVDGASMFQADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIYPDGIGDSKD 2326
E+ GP I++LEQ GI+A+D+KKL EAG++T+E++AY PKK L+ IKGISEAKADKIL E KLVPMGFTTATEFHQ+RSEIIQ+TTGSKELDKLLQGGIETGSITE+FGEFRTGKTQICH L VTCQLP+D GG EGKAMY+DTEGTFRPERLLAVAE+Y L+G +VLDNVAYARA+N+DHQTQLL ASAMM ESRYALLIVDSATALYRTDY+GRGELSARQMH+ARFLR LL LAD++GVAVVITNQVVAQVDGA+MF ADPKKPIGGNI+AHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAI DG+GD+KD
Sbjct: 17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
The following BLAST results are available for this feature:
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