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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065408 ID=TCONS_00065408|Name=TCONS_00065408|organism=Clytia hemisphaerica|type=transcript|length=3933bp
aaaagatttagaaacaatAAGACACAAGAAAAACTGTGAATATTTGACTT
ATCTTATGCAATAAGAAGCTTTTTAAAAGCTGTTGGTATTTCAATAATGG
ATACTATATACTCCTGGTTTGGTCTCAGTCGTGAACAAGTTAACGAAGAA
ACGGATGAAGAGCGAAAGAAGAAAGCTGAGGGTGGTATCAGTCGTCAGAC
TTCCTTGAAAAACCGTCATCCAAACGTTGACATCATTGGAGAAGATGAAG
TAGTGGCCTCATTCACTAAGGTTGAAAATGACATTGACAGTGGTGTTGAA
GATGTCGAGGCCAGTCTTCGACGTAAGCCGAAATTGCGACGTGTCGAATC
CAAAGAACATTTACTGGGTGAAGAGGAATACGTCGTCGTTGATTTTGTCG
GCAATGTCGAACTTTCCAGTCGTAAGTCGTCAAGAGTTGAGCAACCAGAT
GATCTGCAGTTGGATGTCCACCTTGATGAGGAGGAACCGGAATCAGCAAT
TGGAATGACACCTCCTTCATCGCAATCGCCAACGTCGAATATATCCCCTA
CATTTGATGATATTTCAGATAACATTTATGTTGCTGCTTCACCAGAAAAG
CCTTCAGTTGAGATCTCCACAAACGAGAAACCCGAAGAATCTCTTATCGA
GAAATCAGACATTGACGTCCCTTTCACAGACAACCAGGAACGAGCCGATG
TAGAAATCAAGATTGATGTCGACGTACCGGTTGCTCCAATTTCAGAATCT
AAACCAGAGGAAGTTTTACCAAAGCAATCAGATAATGTTGCTGAGAAGCC
GAAAAGTAAAGGCTTGAAGGGATTAAAAAACAGACGAAAAACTGAAGAGA
TACCAACTCCACCAAAGGCTGAAACTCCACCACAAGCTGATTCACCCACT
TTGATGTCTCGATCATCATCCAACCGAAGTATCAGTTCGCGACGGAGTAT
TGATGAATCAGGCAGCAGACGTGGTTCACCTCGGACCAGTACGGTATtac
aaaacaaacttttatttgatCAAAAGGCTTCAGGTCAATTTAAAAAGAGT
CCATCATCATCGTCGACAACCAGTTTGAATTCGTTGCGTGAAGGACGGCA
GGAATCGTTGAGAGGCTCCAACGGAAGACCTGTATCAGGGACAGTTGCTG
GTACTTTAAGCATGTTTGAAGCCAATTCACCTGGAGGACGCTCCAAGAAT
GCTACTAAGAAAAAAGCTGATAACAATTGGGGCGCTTCCCTCGAAACGAA
AGCTACACCCGTGGCGAAGGTTGAAGAGCCGGCGCCGACACTGGAAAAAC
CACCCGTCGAAGAATCCAAACCAGTATCCACCGGCAAAAAGAAGCGATTT
CCATTTAAGAAAAAGAAGTCATCcaatatttcaaacaaaaatatgtCGGA
AACACCATCGGGAGACGTCCAACTCGTTAGTGCAACTCCGGTCAAGAGTG
ACTTTCAAGAGCGTGCTATTGACGTCCCCACCGAAATTGTTCAAGCTACG
GACGCTGCAGAACTAAAGGTGGAAGAACCGATCaatgagaagaaaaagaa
atcagGATCTTTAATGTCACGAATGAAAAGACGAAGTCGTAAAAGTTCCA
CTGAACATTCTGATAACGAGTTGACCACATCGGTGGAGATTGCAGCCAAA
GTTGAAGATCCTGTTATCGAGGAATCGTCTACTCATTTACCGCCAATCGT
TGATACTGGTGTTGATCAAACGTTACCAGAGCAGTCAGTTTCTATTGATG
TCAAGCAACCTGAACCTTCACCAGCTCCTATTGAGTCTGACGCATCCTTT
TCGATCGACAGTAGACAAGTAGCTTCTGTTGAGGATTTGGTGTCACCAGA
AGATGACCCACCAAGTCCTGCTCAAGCCTCAGAGGAGGTGAAATCTTTGT
TAGAAAGCATCATCGATCGTAAACCATTCGAAGATAGTTCTTCTACcact
aaaaagaagaaattaagattgaaaaagaaatcgaaaaataaaatagaaac
tGAGAAACCTCTTCCGTCAGTTGAACTTGTCGTTACACCGACTCCCGTTA
AAGAAGAAGTCGTTGACGAGGGAATCTCCGAGAATAAAATCACTGATGAC
GTGTCGATTTCTGATTGGCCAGAAGAAATGATGAATGATAacaacaatga
cgtcatcgtagAGGACGAGAAAAAAGTCGAACCGTTACCGACGATCGAAG
GAGAGCTGGAAAGCCCGTTAGCAACCAGTGAATTGATACCTCAAATATCA
GTCGAACCAGCTGATGATACCGTCACTAATGACGTCACTGACGGACATGA
TGACGGAATGATGGACGTCAGTTTACATGATGATAACGCTAGTAGTATTT
ATTCGCCCGACGATGACTCTTTATCGATGACAGGCTCTATAAACactgag
aaaaagaaaaagagacgCTTCAAGTTTGGTCTTCGTAAAAGCAGTAGTAA
GAAGAAAGAGAAACAACAACAGCTCTCCCCTCAAAACGAATCAGACATCT
GGGAGCATAATGACGATCAtaaattagaaaagaaaaattcgtCCAAGAAA
TTGAAGCGTCCCAAAAGTCTTGATTTCCTTGCCGATGTCATCCACCCGAG
TCATAAGAAAGATGATAAAAAACAACGCCCGGTTTCTGTGGCGGAACACG
CCGAAGAACAACCGCCTGCTCCTAAATCGCCTACTAAGAGAAAAACATTA
AGCTTattcaagaagaagaagaagcagtCGTCTTCGGATACATCAACTCA
TGACCGCACAATATCTGATGTCGAATCTGATCAAGTTCCGTCACCCACTG
ATGTTTTTAAAATACCGGACGTGGTTGATGGCGGAAATAAAAACGGACAT
GCAACTTTATCAGTTGATCATTCAGAGCATAGTGTAAACACTGAAATGTC
GCTATCTGTTAAATAATTTTATTGGAGACGCCATTCCTTTCTTagatatg
ttttttttagaaattagattttttagaGATCCCCTTtttatgataaattt
taaaatgagaGGTCCCTTTTGGCAGATTGCCCCCGGTCTTATGTTTTTAA
GCCTGACTTTTTAGCTTTAGAGGTTTTTGTCTATAAGATTTTGATAGATT
TTAGAATTATCTTTATTGTCAACGCCTTTTATATTTTCCCATAGAATGAT
TAAATTTGCAGTGGTGAAATTTTTAAACCCTTTTGAAACACAGGATTCTT
AAGATCCCTATTATTCGCTACTATCTGACACTCTCCTTTGTAAATGGTCT
CTATATATTTTTAAGgtgagtttttttcaattttcttcttgAACTTTTGT
GCATAttttatagaaatatttttatagattttttttgctgtaaaacTTTA
AAAGTGACTTAAAAGGTTTAGAGCTttgttttggtgattttttttttttt
ttcacacgaTTTCATACGAACGTAAATCGAAAAATGTGCTCTTCAAAACC
ACGACATTCTGGACAAGCTAGACACTTTGCCCCACGATCCACAATGTTTT
TACCTTTTTATCGTTTACATTTTATCGACCTTGATACGCCATACTGCCtg
ttttttatcctttttcGTACGTTCTATAGATATACCATAAATTGTGtttt
aatttataattttgTGTAAACGTggttattttgttgttttaaattttggg
aaataatttttttcatacacTTCTATACTTTCATGCTGTTATATcgtatt
tttgtaaaattttaagcatttttttagaatttgtaAAACTCTTTCTTTCA
AATCAACTTTCATTCATTCagaattttaataaatatttaatatttattcT
AAATGATTTTCGTTCCATCCTTAAAACCTACAAGGTGACAGATAAATGTT
CGGTACCGTTCAAGtgttgtacacattttttatcatAAGCAACTACCttc
agggaagaaattttggcgggaatttaatttggc Run BLAST on NCBI transcript from alignment at scaffold_439:221260..227065- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065408 ID=TCONS_00065408|Name=TCONS_00065408|organism=Clytia hemisphaerica|type=transcript|length=5806bp|location=Sequence derived from alignment at scaffold_439:221260..227065- (Clytia hemisphaerica)
AAAAGATTTAGAAACAATAAGACACAAGAAAAACTGTGAATATTTGACTT
ATCTTATGCAATAAGAAGCTTTTTAAAAGCTGTTGGTATTTCAATAATGG
ATACTATATACTCCTGGTTTGGTCTCAGTCGTGAACAAGTTAACGAAGAA
ACGGATGAAGAGTAAATATCCAAGCTTCTTTTCTTCTTCTTCTTCTTCTT
TTAACTTTTGAAAAAAAACGATCCATAGCGAACTAATTTTAGTGTGGACG
CTCTACAATAGGACTAGTTTTCTAGAGAACTTAAATCACATTATCACCTA
AAGTCATTACACTTAACCAAGTTATAGAATTCAAGGAAAGAGGTCCAGAG
GAGAATATTAAAATGGCTCACAAAGTAACGTTGAAGCCGGTAAAAGCTCC
TGGTGTTCAAGTCTCCCATTAGTCGGCAAAGAGGAAATCTATAAAATTCC
ACCCTAAATAGAAATGTTGTTTCAATTTTCCTTTCTAATTGTTTTTTAGG
CGAAAGAAGAAAGCTGAGGGTGGTATCAGTCGTCAGACTTCCTTGAAAAA
CCGTCATCCAAACGTTGACATCATTGGAGAAGATGAAGTAGTGGCCTCAT
TCACTAAGGTTGAAAATGACATTGACAGTGGTGTTGAAGATGTCGAGGTA
GGTTGACCAATCAACTTTTTGATCAAAAATAAATTACATATTTTTAATGG
GGAATCGATTTTGGAGTTTGATAAGTGACCTTCAGCTCTTTTGCACTGTT
TGAAATAGCTACACCTGAATTTCTATGAACAGTCCTGTGGTCCTTGAATA
CTGCCTTTTGGTGTTTATTAGGGTTTTGAGTCATAAATGATTAAAAACCA
CCAGCCAATGAAACATCAAACATCCATGCAACATCATAAATGCAACATAC
GTTCTGTCAAACTTATTATCTAACGATGTCATTTAATAAACTGTCAGAAG
GAGTTGCTATTTACTAGTTGCCATGTTTTAAACGTCCAATTAACACAACT
GACAGTGGATTGTTTCCTGAATTTTGCAATTTAATTTTTCTCTCGTGGAT
CTGCTTTTCAAATTCTTAAAAGTAATATTAACATTTTTTGAAACATTTAA
CCTTTAATCCTTAAACTTCGAAAATCCTACTACCTCTAAATGTTACTGAA
ACAGAATATTTCATACAAAGAAAATGTGGCCGAGAAGACTATTCTTTTAA
AGTCTACCAAATCCACCTACCAGTTCGATTGTTCAAAAAAGATTTATTTT
TGGTGAAACTTTCTTTCTATATTCTTGCAGGAACATTCTACGTCATCCAC
GTCAAACGTCATGCGTCGTTTCGTGAGACGTATACGTCAAACTACCGATA
AACGATATCAATTTAACAATAACTATAACAAATAAACCTTCACAATGACT
AATGGTAATGAATAAAGTTTGCGCAGTATTAAAACCTTAAAACCTTAAAG
TTAAATTCCATAAATTGGGGTAACTAATATTAGCAAGTGTGTAACTTTAA
CAGGAACTTTTATCTCGAAACATCGGAGTTTCCTGTCTGTAAATTATAAT
CAAGCTAGAATGTAAAAGTATGTATCTTTAATTGACCAATTTTAATAGAA
GAAAATTTAATCTGACAACATAAATAATGATAACGATAATGATAAAGTTG
AACCCAAAAGCTTATTCTGAAATCGAAATGTATTGATGTATGAATCTATA
AGACAGGGTTCAGACAGACCCTGGAAAACCTGGAAAACCTGGAAATATGA
TAAATTTTCAGAAAGATCAGGGAAACTCAGGGAAACCCAGGGAAAAATTT
TTTTTTCCCCAGTCTGCTCAGGGAAACTCAGGGAATTTTATTTTTTGAAG
AATGAATGGAAAAAACAGATTTAAAAGTTTTTTTAGTTTTAAAGTGTTTA
TTCATATGCAGTATTGGTAGCTTTAATTTTTACCTTAGGTTTACCATTTG
ATTTGTGTGCCTTTTGTTTAAAGATACATCTCTTTTGACTCTGCTTAGTT
TTTATGGTTTGCTTGATACTCAGGGAAAAAATAGCTAAAATGAGGGATTT
CTCAGGGAAAAAACCTTTGAAAATTAATTAAAATTCAGGGAAACTCAGGG
AATTTTATTTTCGAAGGTCTGTCTGAACCCTGTAAGACTTAAAACCCCAT
TAAAACCAACTCCTCTCTTTTCCTCTCTTCAGGCCAGTCTTCGACGTAAG
CCGAAATTGCGACGTGTCGAATCCAAAGAACATTTACTGGGTGAAGAGGA
ATACGTCGTCGTTGATTTTGTCGGCAATGTCGAACTTTCCAGTCGTAAGT
CGTCAAGAGTTGAGCAACCAGATGATCTGCAGTTGGATGTCCACCTTGAT
GAGGAGGAACCGGAATCAGCAATTGGAATGACACCTCCTTCATCGCAATC
GCCAACGTCGAATATATCCCCTACATTTGATGATATTTCAGATAACATTT
ATGTTGCTGCTTCACCAGAAAAGCCTTCAGTTGAGATCTCCACAAACGAG
AAACCCGAAGAATCTCTTATCGAGAAATCAGACATTGACGTCCCTTTCAC
AGACAACCAGGAACGAGCCGATGTAGAAATCAAGATTGATGTCGACGTAC
CGGTTGCTCCAATTTCAGAATCTAAACCAGAGGAAGTTTTACCAAAGCAA
TCAGATAATGTTGCTGAGAAGCCGAAAAGTAAAGGCTTGAAGGGATTAAA
AAACAGACGAAAAACTGAAGAGATACCAACTCCACCAAAGGCTGAAACTC
CACCACAAGCTGATTCACCCACTTTGATGTCTCGATCATCATCCAACCGA
AGTATCAGTTCGCGACGGAGTATTGATGAATCAGGCAGCAGACGTGGTTC
ACCTCGGACCAGTACGGTATTACAAAACAAACTTTTATTTGATCAAAAGG
CTTCAGGTCAATTTAAAAAGAGTCCATCATCATCGTCGACAACCAGTTTG
AATTCGTTGCGTGAAGGACGGCAGGAATCGTTGAGAGGCTCCAACGGAAG
ACCTGTATCAGGGACAGTTGCTGGTACTTTAAGCATGTTTGAAGCCAATT
CACCTGGAGGACGCTCCAAGAATGCTACTAAGAAAAAAGCTGATAACAAT
TGGGGCGCTTCCCTCGAAACGAAAGCTACACCCGTGGCGAAGGTTGAAGA
GCCGGCGCCGACACTGGAAAAACCACCCGTCGAAGAATCCAAACCAGTAT
CCACCGGCAAAAAGAAGCGATTTCCATTTAAGAAAAAGAAGTCATCCAAT
ATTTCAAACAAAAATATGTCGGAAACACCATCGGGAGACGTCCAACTCGT
TAGTGCAACTCCGGTCAAGAGTGACTTTCAAGAGCGTGCTATTGACGTCC
CCACCGAAATTGTTCAAGCTACGGACGCTGCAGAACTAAAGGTGGAAGAA
CCGATCAATGAGAAGAAAAAGAAATCAGGATCTTTAATGTCACGAATGAA
AAGACGAAGTCGTAAAAGTTCCACTGAACATTCTGATAACGAGTTGACCA
CATCGGTGGAGATTGCAGCCAAAGTTGAAGATCCTGTTATCGAGGAATCG
TCTACTCATTTACCGCCAATCGTTGATACTGGTGTTGATCAAACGTTACC
AGAGCAGTCAGTTTCTATTGATGTCAAGCAACCTGAACCTTCACCAGCTC
CTATTGAGTCTGACGCATCCTTTTCGATCGACAGTAGACAAGTAGCTTCT
GTTGAGGATTTGGTGTCACCAGAAGATGACCCACCAAGTCCTGCTCAAGC
CTCAGAGGAGGTGAAATCTTTGTTAGAAAGCATCATCGATCGTAAACCAT
TCGAAGATAGTTCTTCTACCACTAAAAAGAAGAAATTAAGATTGAAAAAG
AAATCGAAAAATAAAATAGAAACTGAGAAACCTCTTCCGTCAGTTGAACT
TGTCGTTACACCGACTCCCGTTAAAGAAGAAGTCGTTGACGAGGGAATCT
CCGAGAATAAAATCACTGATGACGTGTCGATTTCTGATTGGCCAGAAGAA
ATGATGAATGATAACAACAATGACGTCATCGTAGAGGACGAGAAAAAAGT
CGAACCGTTACCGACGATCGAAGGAGAGCTGGAAAGCCCGTTAGCAACCA
GTGAATTGATACCTCAAATATCAGTCGAACCAGCTGATGATACCGTCACT
AATGACGTCACTGACGGACATGATGACGGAATGATGGACGTCAGTTTACA
TGATGATAACGCTAGTAGTATTTATTCGCCCGACGATGACTCTTTATCGA
TGACAGGCTCTATAAACACTGAGAAAAAGAAAAAGAGACGCTTCAAGTTT
GGTCTTCGTAAAAGCAGTAGTAAGAAGAAAGAGAAACAACAACAGCTCTC
CCCTCAAAACGAATCAGACATCTGGGAGCATAATGACGATCATAAATTAG
AAAAGAAAAATTCGTCCAAGAAATTGAAGCGTCCCAAAAGTCTTGATTTC
CTTGCCGATGTCATCCACCCGAGTCATAAGAAAGATGATAAAAAACAACG
CCCGGTTTCTGTGGCGGAACACGCCGAAGAACAACCGCCTGCTCCTAAAT
CGCCTACTAAGAGAAAAACATTAAGCTTATTCAAGAAGAAGAAGAAGCAG
TCGTCTTCGGATACATCAACTCATGACCGCACAATATCTGATGTCGAATC
TGATCAAGTTCCGTCACCCACTGATGTTTTTAAAATACCGGACGTGGTTG
ATGGCGGAAATAAAAACGGACATGCAACTTTATCAGTTGATCATTCAGAG
CATAGTGTAAACACTGAAATGTCGCTATCTGTTAAATAATTTTATTGGAG
ACGCCATTCCTTTCTTAGATATGTTTTTTTTAGAAATTAGATTTTTTAGA
GATCCCCTTTTTATGATAAATTTTAAAATGAGAGGTCCCTTTTGGCAGAT
TGCCCCCGGTCTTATGTTTTTAAGCCTGACTTTTTAGCTTTAGAGGTTTT
TGTCTATAAGATTTTGATAGATTTTAGAATTATCTTTATTGTCAACGCCT
TTTATATTTTCCCATAGAATGATTAAATTTGCAGTGGTGAAATTTTTAAA
CCCTTTTGAAACACAGGATTCTTAAGATCCCTATTATTCGCTACTATCTG
ACACTCTCCTTTGTAAATGGTCTCTATATATTTTTAAGGTGAGTTTTTTT
CAATTTTCTTCTTGAACTTTTGTGCATATTTTATAGAAATATTTTTATAG
ATTTTTTTTGCTGTAAAACTTTAAAAGTGACTTAAAAGGTTTAGAGCTTT
GTTTTGGTGATTTTTTTTTTTTTTTCACACGATTTCATACGAACGTAAAT
CGAAAAATGTGCTCTTCAAAACCACGACATTCTGGACAAGCTAGACACTT
TGCCCCACGATCCACAATGTTTTTACCTTTTTATCGTTTACATTTTATCG
ACCTTGATACGCCATACTGCCTGTTTTTTATCCTTTTTCGTACGTTCTAT
AGATATACCATAAATTGTGTTTTAATTTATAATTTTGTGTAAACGTGGTT
ATTTTGTTGTTTTAAATTTTGGGAAATAATTTTTTTCATACACTTCTATA
CTTTCATGCTGTTATATCGTATTTTTGTAAAATTTTAAGCATTTTTTTAG
AATTTGTAAAACTCTTTCTTTCAAATCAACTTTCATTCATTCAGAATTTT
AATAAATATTTAATATTTATTCTAAATGATTTTCGTTCCATCCTTAAAAC
CTACAAGGTGACAGATAAATGTTCGGTACCGTTCAAGTGTTGTACACATT
TTTTATCATAAGCAACTACCTTCAGGGAAGAAATTTTGGCGGGAATTTAA
TTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065408-exon-scaffold_439-1575043694:226905..227065 | TCONS_00065408-exon-scaffold_439-1575043694:226905..227065 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1575043694:226419..226566 | TCONS_00065408-exon-scaffold_439-1575043694:226419..226566 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1575043694:221260..224883 | TCONS_00065408-exon-scaffold_439-1575043694:221260..224883 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1510915933:226905..227065 | TCONS_00065408-exon-scaffold_439-1510915933:226905..227065 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1510915933:226419..226566 | TCONS_00065408-exon-scaffold_439-1510915933:226419..226566 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1510915933:221260..224883 | TCONS_00065408-exon-scaffold_439-1510915933:221260..224883 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1491911889:226905..227065 | TCONS_00065408-exon-scaffold_439-1491911889:226905..227065 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1491911889:226419..226566 | TCONS_00065408-exon-scaffold_439-1491911889:226419..226566 | Clytia hemisphaerica | exon |
| TCONS_00065408-exon-scaffold_439-1491911889:221260..224883 | TCONS_00065408-exon-scaffold_439-1491911889:221260..224883 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:221260..227065 - |
Blast
The following BLAST results are available for this feature:
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