TCONS_00065582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065582
Unique NameTCONS_00065582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065582 ID=TCONS_00065582|Name=TCONS_00065582|organism=Clytia hemisphaerica|type=transcript|length=1148bp
ATTGAATGACATTGATATTCTGATGCAGAGAAGTAATCAACAGAAAAATG
GGTGGACATTTCTTAAACgaggaaaatgaagaaaaagctGCAAAGatttt
attatcaaaagaaTATGATGGAAGTAACAAGTCTGGAAAATGTACGAAGT
ATTGCAGTAAATTACCATATCTTCTTTTGTATACTTTCATCTTTCTATTG
GGATTTATCGCTGGTCTGACTCTTCCATTAACACAACATTTACAAACAAG
TTTGATAGataaaaagatTCAAAAGTTAGAGTTGATCGTTGAAAGATTCG
AATCGAAAGTTTCCTCCATCAGTAACAACTCACTGACATTCAAGAATCAG
ATAATGGATGCTTTGACTGAGGCTATTTCAACCAGAAATAATCGGTCAAT
AAAGCAACAGTATTTAGCCCGATCTCAAGACAATCTATTAAAGAAATCTA
TCACAAAAACTTTATCGACACAGCATGCTTCAACAACAAAAGCTGCAACC
ACTACAACAATGGCTTTCACACCAACTCCAAGCCAAGATAAAACTGTCGC
CGGCCCCGACAACGTGGACATCCATCTATCATGTCCTCTCTTCTACAACA
TCAACATCAAATCAGTGTATTATCAAAACGTGCAAGCCAGTAGCGATTCT
CTCAAACGTCTTCAAAATGTATGCAATGATTCTACTCTTATTTCTGGCAA
TCGTACCAAATGTGCTGTCAGCTTGTTGAAAGCTTATGGTTCATCTTTTG
GTGGAACTATGAAAGTGATGTATAATTGTATTCCAGGTCTTTGACTTTGA
GATGACTTCTCAATAAGAATATTGAAgtaaaaagtattttgaaaattgaa
ttcaaatatacaaaaaaaacaaaactatcATGCAATATGTTACAGCCTCC
GAAGGAGAACTTTCAGAATGAAGTAAAGTAACAACCCCGTCTCACGAACT
AGATTAGACCCCCAACTCACTCAAATCATTTCAAAAGAAACAGTTTTGGG
AATAACTAAAGGACATCAGTCTTTTCGTTCACATTGAATTTGACCTTTTC
ATTTTATTCGATATTCGATATTCGatttattattatatatttaaaaataa
aacagcGACTGGGGTTATTCTCAAGATCTAAATCCATTTTAATAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00065582-protein

>TCONS_00065582-protein ID=TCONS_00065582-protein|Name=TCONS_00065582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MGGHFLNEENEEKAAKILLSKEYDGSNKSGKCTKYCSKLPYLLLYTFIFL
LGFIAGLTLPLTQHLQTSLIDKKIQKLELIVERFESKVSSISNNSLTFKN
QIMDALTEAISTRNNRSIKQQYLARSQDNLLKKSITKTLSTQHASTTKAA
TTTTMAFTPTPSQDKTVAGPDNVDIHLSCPLFYNINIKSVYYQNVQASSD
SLKRLQNVCNDSTLISGNRTKCAVSLLKAYGSSFGGTMKVMYNCIPGL
Run BLAST on NCBI

transcript from alignment at scaffold_440:452654..456339+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065582 ID=TCONS_00065582|Name=TCONS_00065582|organism=Clytia hemisphaerica|type=transcript|length=3686bp|location=Sequence derived from alignment at scaffold_440:452654..456339+ (Clytia hemisphaerica)
ATTGAATGACATTGATATTCTGATGCAGAGAAGTAATCAACAGAAAAATG
GGTGGACATTTCTTAAACgaggaaaatgaagaaaaagctGCAAAGatttt
attatcaaaagaaTATGATGGAAGTAACAAGTCTGGAAAAGTAagccatt
tttttaaaatttaaattcaaactGCTACTACTAAGAACTCCTGATTTGGA
GATTGCACTACCTTTGTCAATCGACCAGGATATTAGAAAAGATATTAGTT
AGAAAATGGGCTTAAAGATTGACTTCTTTAAGAAGTTTTTGgctaaaatg
tttgaaaatatgACCCTGAATAAAATCCTAAATTTCCGTTAGATTTTCTA
ACCCTCTAAGACTTTACCGAAAAGGGTACCCAGCGAAGAACTGGTTTTAC
CTTTTTGGTTTTGTGAGTCCTCCTTGGATGTttactatgctatagtctaa
gacaaatcactatctaagaaataagcccaaagccgaagaaaattcgcaaa
ggggatatttttgccaaaaagagtttacagtcgatAGAGTTTGCAAGTTT
CTCTCCCACCGATTTTTTCTCCATATACCGCCATAACgtcataccgccat
attttcctgCCTTTACTACACTGTAACAGAAGATAACATTGTCTACTTTG
TCTACTTTGGATGACACATTTCCACCTCTTTCATTACCTACAGACTTGAA
CCCAATCCCCTTAGTTTGTTCTTTAAGATTCCGATATCGCCCAAGAAATT
ATTGTACCTAAATacgcccagctggcacacaacgttgtttcaacgttaat
ataacgttatatggacgttgtgaacgttagataagcgttgaaacaacgtt
gtgtgcctgctgggcgtccatcagtaaaatcaaaagtggTGCAAAAgact
ctgggtacgagattgttattgggcttttccagaaaaaaaccgtatacccc
ctgttgaggaggtctatCATTTTGTAGCTGGAAATGAcgtaaccccctgg
aatttcCAGGCAATTCCAGgattaaacccctctggaattctgaatttcag
taggatttaaaaggctacccccatggaattccagttatttttgacagata
tggaaatggacctcctcaacaggggtatacggtttttttctggaaaagcc
cattgccTGGCTACCCAAACTGGAAATCACCACCATCAACAATACAGTAC
TTGCAGTAGTGAAACGTTTTCTCTATATCTATTTTTTTTCGTTACAGTGT
ACGAAGTATTGCAGTAAATTACCATATCTTCTTTTGTATACTTTCATCTT
TCTATTGGGATTTATCGCTGGTCTGACTCTTCCATTAACACAACATTTAC
AAACAAGTTTGATAGGTGAGTATCTCAATAATGTATTGTACAGTAGAGCC
TCTACATTGCCTCTTACGGCTAACAACCCCAAAAGTTCGTTCAttaatca
aatgaaaaaaattccgctgaaattgtaaatttccaaataattcGAGAGAG
AGAGAGGAATCGAGCTGACCAACTAAAAAAGCTCCACAAAAACTGTTTTG
TGAATTACAAGCCAAATTTGTTTGTACTGCCTATTCCTGTTATTTTAAGC
AAATAGCTGGCGGAAAGTAGGCTGTTAAatgttaaaatgttaaaaagata
tATAAAGTTTTGCAGTTACTTTAGACACCCAACTTTTTACCCACTTTCAT
AAAAGGTAAACACAATGAATGCTAGTttttttcattgtctttttttttca
gataaaaagatTCAAAAGTTAGAGTTGATCGTTGAAAGATTCGAATCGAA
AGGTAATTTTGCTATAATTCCACCGAAGTacctatttttttctattttat
aatTTCTCGTGTGTTTCTTTCCTGAATCTTTAGTTTTACCTGCAAAAGTA
CCCTACTGTAAattacactttcgttttcttgtgTTAGAAAATTTACAGGT
TTATAGGATTCCCGATACTGATTTACACTTCTGTACCACAAAAAGAAGAA
ATCCTTACTCATTGAAATAAAGATCATCGATCCAGGGCTTTTACTATCCC
AGCTGGCAAGGGGCTGGCACACTACGTTCTTTCAACGTCAATTTAATGTT
CAAAACGTcctccatttaacgttagatgaacgttgaagcaACAGCTGGGA
TAGATAAGACATAGGACAATCTGGGAGAAAACAATTTCAAACCAACAAGT
ccatttatataaaaattttagaCTGTATATTCTTTTTTATCCGCCATAGT
TTCCTCCATCAGTAACAACTCACTGACATTCAAGAATCAGATAATGGATG
CTTTGACTGAGGCTATTTCAACCAGAAATAATCGGTCAATAAAGCAACAG
TATTTAGCCCGATCTCAAGACAATCTATTAAAGAAATCTATCACAAAAAC
TTTATCGACACAGCATGCTTCAACAACAAAAGCTGCAACCACTACAACAA
TGGCTTTCACACCAACTCCAAGCCAAGATAAAACTGGTAAACTTTACTAG
TAACGCACACATGCATAGTATATTACTGTGCTACTTTTACGCGTAATACA
TCGTAATTTCTTTTGTTACTTCTATTACAGTATATATGATTAAGGATGCT
GCATTGGACTCCAAATCCCGGGGGGGCAGTCAgacaaattgaccgacggg
tatgtgcggcggttaagggtatgtttttcaaaatatcagaaatgcactgt
aaaggtggacttttgataaatgcactgtaagggtggaaatttcagcaaat
ctgggaaaaattgcaaatttctGCTCGAAAATGTAGATTttttttgctct
aaaagagtttaaaatttgaaaaaatgcactgtaagggtatgaatttcacc
gatttttttctgcactgtaagggtgcgattttaaaagccatttttttcgc
cgcacataccgtcagttggtaaacccactgccccccctgGGCTCCAAATA
CCCTGGTACCCAGAAGCCTTTTGGGGATATTGACTTTATTGTCACTTATT
TCCTTGAGAATCTGGGTAGATGTTGGGTTATCATTCCAGCCACTTTATTC
AATATCCAATGTCATACATCTGATCTATTTTCAGTCGCCGGCCCCGACAA
CGTGGACATCCATCTATCATGTCCTCTCTTCTACAACATCAACATCAAAT
CAGTGTATTATCAAAACGTGCAAGCCAGTAGCGATTCTCTCAAACGTCTT
CAAAATGTATGCAATGATTCTACTCTTATTTCTGGCAATCGTACCAAATG
TGCTGTCAGCTTGTTGAAAGCTTATGGTTCATCTTTTGGTGGAACTATGA
AAGTGATGTATAATTGTATTCCAGGTCTTTGACTTTGAGATGACTTCTCA
ATAAGAATATTGAAgtaaaaagtattttgaaaattgaattcaaatataca
aaaaaaacaaaactatcATGCAATATGTTACAGCCTCCGAAGGAGAACTT
TCAGAATGAAGTAAAGTAACAACCCCGTCTCACGAACTAGATTAGACCCC
CAACTCACTCAAATCATTTCAAAAGAAACAGTTTTGGGAATAACTAAAGG
ACATCAGTCTTTTCGTTCACATTGAATTTGACCTTTTCATTTTATTCGAT
ATTCGATATTCGatttattattatatatttaaaaataaaacagcGACTGG
GGTTATTCTCAAGATCTAAATCCATTTTAATAAAGC

Coding sequence (CDS) from alignment at scaffold_440:452654..456339+

>TCONS_00065582 ID=TCONS_00065582|Name=TCONS_00065582|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_440:452654..456339+ (Clytia hemisphaerica)
ATGGGTGGACATTTCTTAAACgaggaaaatgaagaaaaagctGCAAAGat
tttattatcaaaagaaTATGATGGAAGTAACAAGTCTGGAAAATGTACGA
AGTATTGCAGTAAATTACCATATCTTCTTTTGTATACTTTCATCTTTCTA
TTGGGATTTATCGCTGGTCTGACTCTTCCATTAACACAACATTTACAAAC
AAGTTTGATAGataaaaagatTCAAAAGTTAGAGTTGATCGTTGAAAGAT
TCGAATCGAAAGTTTCCTCCATCAGTAACAACTCACTGACATTCAAGAAT
CAGATAATGGATGCTTTGACTGAGGCTATTTCAACCAGAAATAATCGGTC
AATAAAGCAACAGTATTTAGCCCGATCTCAAGACAATCTATTAAAGAAAT
CTATCACAAAAACTTTATCGACACAGCATGCTTCAACAACAAAAGCTGCA
ACCACTACAACAATGGCTTTCACACCAACTCCAAGCCAAGATAAAACTGT
CGCCGGCCCCGACAACGTGGACATCCATCTATCATGTCCTCTCTTCTACA
ACATCAACATCAAATCAGTGTATTATCAAAACGTGCAAGCCAGTAGCGAT
TCTCTCAAACGTCTTCAAAATGTATGCAATGATTCTACTCTTATTTCTGG
CAATCGTACCAAATGTGCTGTCAGCTTGTTGAAAGCTTATGGTTCATCTT
TTGGTGGAACTATGAAAGTGATGTATAATTGTATTCCAGGTCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041092XLOC_041092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065582-exon-scaffold_440-1491911889:452654..452793TCONS_00065582-exon-scaffold_440-1491911889:452654..452793Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1510915933:452654..452793TCONS_00065582-exon-scaffold_440-1510915933:452654..452793Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1575043694:452654..452793TCONS_00065582-exon-scaffold_440-1575043694:452654..452793Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1491911889:453901..454018TCONS_00065582-exon-scaffold_440-1491911889:453901..454018Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1510915933:453901..454018TCONS_00065582-exon-scaffold_440-1510915933:453901..454018Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1575043694:453901..454018TCONS_00065582-exon-scaffold_440-1575043694:453901..454018Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1491911889:454405..454455TCONS_00065582-exon-scaffold_440-1491911889:454405..454455Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1510915933:454405..454455TCONS_00065582-exon-scaffold_440-1510915933:454405..454455Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1575043694:454405..454455TCONS_00065582-exon-scaffold_440-1575043694:454405..454455Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1491911889:454903..455139TCONS_00065582-exon-scaffold_440-1491911889:454903..455139Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1510915933:454903..455139TCONS_00065582-exon-scaffold_440-1510915933:454903..455139Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1575043694:454903..455139TCONS_00065582-exon-scaffold_440-1575043694:454903..455139Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1491911889:455738..456339TCONS_00065582-exon-scaffold_440-1491911889:455738..456339Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1510915933:455738..456339TCONS_00065582-exon-scaffold_440-1510915933:455738..456339Clytia hemisphaericaexon
TCONS_00065582-exon-scaffold_440-1575043694:455738..456339TCONS_00065582-exon-scaffold_440-1575043694:455738..456339Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065582-proteinTCONS_00065582-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:452654..456339 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0755649	0.0368439	0.0855585	0	0.152855	0.120788	0.825781	0.636659	1.20987	1.0648	0.918689	1.03168	1.90972	1.56574	0.0429083	0.0230236	1.75852	1.56985	2.89178	5.16948	3.43384	2.56582	0.866413	2.12678	1.94714	2.93249	0.984338	0.331741	0.0419356	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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