TCONS_00065587 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065587
Unique Name	TCONS_00065587
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1304

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_440:606482..612245+
coding sequence from alignment at scaffold_440:606482..612245+

transcript sequence

>TCONS_00065587 ID=TCONS_00065587|Name=TCONS_00065587|organism=Clytia hemisphaerica|type=transcript|length=1304bp
taattattgaaaaagaaaaagaaaaaaaactattaaaaaatgCTTGCTCT
ATGGATAACAATAGGGGTGACAGGAACCTACATAACAGCTTCAATACTCT
TTGGAAGGTTTCCTACCTTGCTtcacaaaaagaagaaacaaaaatttcgc
TGTCAGCACATCAGCCATCGGGGAGGTGCTGGAGAGAATCTAGAAAATAC
AATAACTGCATACAAAGATGCAATCAAGAACGGAACAAATATGATTGAAT
TGGATGTTCAATTAACTGCAGATGGAGtgGTTGTAGTATCTCATGATAAC
GAATTGGGCAGAATAACTGGAGCTGAGGGATTGATATCGGAAACCAACTT
TGAGgaTTTGCCTTGCTTACAACCAGTACAAGACATTACTTTTGATATAG
GTGCAAAAATGACAAGTGATAGCAAAGACAACAAAATACCAACTTTGCGT
AAAGTATTTGAAGAATTCCCAAACATTCCTATGAATATTGACATCAAAAG
AAATGATGATGAATTAATCGATAAGACTCTGGCTTTGATTAAAGAATTCC
AAAGAGAAGAAATAGTTGCAGCTGGAAATTTCAGTGAAACAATTACTGGG
AAAATTCATCAAAGGGCACCAAAGATACCATTGATATTTTCAATGAAGAA
AGTAATGATAACTCTGGTATTATTTTACACTGGCTTGCTTCCCTTTATAC
CACTCAAAGAAGACTTTTTCGAAATACCACTACCAAGGGTTATTTTAAgg
cATCCAGACACATTCGTCAACATAAGAactttgttgaaaattgcaGACTG
GCTTTTGGTCAGTCCCGTCTTATTCCGTCATTTACAACGTAGAGGAATCC
AGGTGTACATGTTTGTGATTCAAGAGGATGAAGACTTTGATTTCTGTTTG
AACAAAGCCAAAGTTGATGGCGTAATGACTGACTATCCCAAACGTTTATc
caactttttaaaagaatctAAAGGCTCTACTGGCGATGAGACAGATCCTA
TACTTAAGAAAGACTAGTTAATAATAGAATATATTTATTTCGTGCCCATT
ATTCCACAGTAcactttgttcttttttataagaacaatttgagaacAATT
CTGAGACTGAAATCActcaatttcaaacaatttagTGGTCaaagtaaaaa
ttgggtataacgcctaaaatacctcaattgatcctataaataagaataga
ataagaacaatttgaggctcaaagtgccaaaaaataggAACAGCTGAGCC
TCAGCAAaactttactggttcttatgacAAAAAGTGTATTACAGATCTTT
AGAG

Run BLAST on NCBI

protein sequence of TCONS_00065587-protein

>TCONS_00065587-protein ID=TCONS_00065587-protein|Name=TCONS_00065587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MLALWITIGVTGTYITASILFGRFPTLLHKKKKQKFRCQHISHRGGAGEN
LENTITAYKDAIKNGTNMIELDVQLTADGVVVVSHDNELGRITGAEGLIS
ETNFEDLPCLQPVQDITFDIGAKMTSDSKDNKIPTLRKVFEEFPNIPMNI
DIKRNDDELIDKTLALIKEFQREEIVAAGNFSETITGKIHQRAPKIPLIF
SMKKVMITLVLFYTGLLPFIPLKEDFFEIPLPRVILRHPDTFVNIRTLLK
IADWLLVSPVLFRHLQRRGIQVYMFVIQEDEDFDFCLNKAKVDGVMTDYP
KRLSNFLKESKGSTGDETDPILKKD

Run BLAST on NCBI

transcript from alignment at scaffold_440:606482..612245+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065587 ID=TCONS_00065587|Name=TCONS_00065587|organism=Clytia hemisphaerica|type=transcript|length=5764bp|location=Sequence derived from alignment at scaffold_440:606482..612245+ (Clytia hemisphaerica)
taattattgaaaaagaaaaagaaaaaaaactattaaaaaatgCTTGCTCT
ATGGATAACAATAGGGGTGACAGGAACCTACATAACAGCTTCAATACTCT
TTGGAAGGTTTCCTACCTTGCTtcacaaaaagaagaaacaaaaatttcgc
TGTCAGCACATCAGCCATCGGGGAGGTAcgttatagaccttttttaaaat
ATGATAAGAGATTGAGGAATTAGGAATAATATGATGGTATGTGGTGCTGA
TTTAAAGTTTATTTCTTTGCTTTTAGCGATCAGAGAGCggtaatattttt
tcaatcagtgattctcCAACCTTCCTATTAGAGTTGGACTATAGAGTTGG
TCTGATCTTGACATCCCTCCTCTCTAGTTCTAAGAAATCCGTGATTGAAA
CCTTGTTTCTAGTAGTTGGTTAGTGGTCAGCAGAGAAGgggaaaacatat
ttttcaataGTTGTTTGGGAAAACAGCAACCTATTGACTCAGTGCCTCAT
ATCAAATTATTCCATCCATTTGGGCCAGAAACTAGGGTAGAACCATCTGC
ATATAAAACCCTctgaaaagaaaagttttgtgaaaaaggggcTTAACACA
ACAATTGGGCTATtgcatttttaaaccatacaggggtattgacaaacttt
tctAGAGGggtctgagccttgattttcaagagttttttgttcctttttca
gattttccaagggggttattgaaggtttccagggggttctctcTTCATAA
ACTGATATCAATAGTTGTTTTCCAGCCCcttttccccaaaatttcacttt
ccagagGGGTCTTCCCCTTCCAGGagataatttgttattcaaaattttca
gggAAGTTAGTGagaaaagtttgtcaatacccctgtataattttttttgg
aagtcTTCAGTGGACCGCCTGAAGGGCCTGGAAACCCTCTACGATCCCCT
tggaaaaatatggaaaaataaacaaaaacccATTGAAAATCCAAGCTCTC
AGACCTCCTGGAAAAGTTTGTCGATACCCTTGTCTTGGAATGAAATAGCC
TGTTGTTTCTATCTACAATCTAAGTCaatctaaagaagggtgtcaaaata
AGTTTGAGGGATGTAGACATAATAGACTAACTATGCTACTAATCTAATTA
CTTtaactgtaagttggtctaattaTAGGGCAATCCGCATTTTATTCTAT
CACAAGTCACTTGTTTTTAAAGATAGCTTGTggattaattttgatgaaaa
ttaaaaattgggggaatttggcagattttggcaaatattttagaaaattg
atttaCGGAATTAAAGAAAATTATGTTAACTTTGTTTAGTTATATACAGT
ATTACTACCTTATCGATTaaattcatcatcatcatcatcattttttttta
tattaaaaattaaatccacgccaaaattaatccacttgaGATAGAAGGCT
GAAGATGACCATTTTACAATTATTCTTTTCGGTGACTNCCACTTGAGATA
GAAGACTGAAGATGACCATTTTACAATTATTCTTTTCGGTGACTTGAATT
TTGAGTTTCTTGAAGAtgcagttttcaaaatttgttttcttattttatct
tatttaaagGATAGATAGTATGAAGGTCAGAATTGATGATCTGACACTGT
TATCTTGGCTTTTTTTCAGGTGCTGGAGAGAATCTAGAAAATACAATAAC
TGCATACAAAGAGTAAGTTCAAATCATGAATATCTAAAATTACATCTTTT
ACTGCCTTATTGATAATGTTCaatgaaaagctttttcatTACAAAATGAA
TAGATTTATTTGTTTCATTATCATAGTGCAATCAAGAACGGAACAAATAT
GATTGAATTGGATGTTCAATTAACTGCAGATGGAGtggtaaaaaagtttt
tctttctttcaaaaacgtTATTAACAATAGCCTAATCCTTACACAGGGCT
TTTTCATTTACACAGATATTGAAATAACTTGTCATCCAATTCTACCTTGT
GTTTCAGGTTGTAGTATCTCATGATAACGAATTGGGCAGAATAACTGGAG
CTGAGGGATTGATATCGGAAACCAACTTTGAGGTAAATTGTGTATATATG
TATGACATGAATAAAATATAGAATTGTTAGTTAGTTACAGGTATAAAAAT
TCAATATCAAACAaaattgctcttataaaattatcCAAGATTATATTGTG
atacaatgttttttcttttaggaTTTGCCTTGCTTACAACCAGTACAAGA
CATTACTTTTGATATAGGTAATAAACACTTCATGGATAATTTATTATGAT
ACTTGAAAGAATACAAGGAGCTTGTTGACTAATCATAATTAGAATTTAGA
ACTATTTCAAGAATGATTATCCAAAAAACCTTCCTCAGTGAGATATGATC
ATCAGAATTTTATCATGGTAACTTGCTTTCAGCTCCTCAAAGCTTTGATA
CTGCAATAACTAAAAAAATGTTGTCTGGTCTTCTGAGGTTGCAATGGGTA
TGATTATAACTTCACATTGGTGTTATTATTTGTTGTTTAAGGTGCAAAAA
TGACAAGTGATAGCAAAGACAACAAAATACCAACTTTGCGTAAAGTATTT
GAAGAATTCCCAAACATTCCTATGAATATTGACATCAAAAGAAATGATGA
TGAATTAATCGATAAGGtaactaaacaaagaaaaaagtttatttttcatt
atggAATCGTTGTTGTGGGAATGACACGTTTTTCTTAAGATAAGAACTCT
AGAAGACTAATAAATGAATGGACAAAGGTATCAtaaatttttaatcattt
ttatttaGACTCTGGCTTTGATTAAAGAATTCCAAAGAGAAGAAATAGTT
GCAGCTGGAAATTTCAGTGAAACAATTACTGGGAAAATTCATCAAAGGGT
ATTGTTCGCTAAATTTTTACAAAGACTGTTATATTGTTTACTTCTCATAG
TTTTGAATTTGCAAgctctttttgatttttatggaGTAAGATTGGTTTGT
AACCTTTTTCTAACTCTACACATAGTATTGAGCACAATTAGATGAAGTTA
TTAATTTATGTAAAACTGAAATCTTTTTAAAtcgtttgcttttttttaaa
catgtATACTTTTAAAATAAAGCAAACATTTGCAGATTATTTCGTTGATT
TGAATGTAAATTCTGAGCCATATCATAATGCTGAATACCATTGAACTGCA
ACATTTAGGTTCTTCAAAAAAGTTTCCCTTATCGTTAATTTCAAGGCATC
GCAAAATGCCATAAAGTTAATGGACTTTGAGCTGCTGCAAAAGTGAAATC
ATTTTTTCCTATCATAGGCACCAAAGATACCATTGATATTTTCAATGAAG
AAAGTAATGATAACTCTGGTATTATTTTACACTGGCTTGCTTCCCTTTAT
ACCACTCAAAGAAGACTTTTTCGAAATACCACTACCAAGGGTTATTTTAA
ggtaaaatttattgaaatacatgttttttttataagcatacaaaaatctg
aaaacaggctcagagatgcttaggtcgaaagcttNcatgttttttttata
agcatacaaaaatctgaaaacaggctcagagatgcttaggtcgaaagctt
aataaggctgtaaaatgcttgaggggatgcttagatctaaagcataaatt
tagggaaatactgaaaatccgtgaaattccagccaaaaaaagccaaaatc
aggaaaaatatattttttgtaggctcaagcaatgcttgccatatgcttaa
ttttttcccatatctgagcctagatatgcttataagtgcaatgcttataa
aaaaaaacatgtatctcaAATAAACAAACATTTAGGAACATTCCGCTATG
ATGTGCGAAACTGTGGATTTAATTCCTAGCCAGGTTTTACAGAAAGACTT
TAGAAACTGGTATTTAATCTATCTGGTGCCCACCCTTCCTTAGgtttact
ttatttattttatattttaggcATCCAGACACATTCGTCAACATAAGAac
tttgttgaaaattgcaGACTGGTAAGATCTTCATTTAAATGACTTCATTT
GCTGACCAAATTTTCACACTTTGTATAAAGATTGTCGGTATGTTTTAGCT
GTTCACAGTTTCACCCTATTGACAGGTCTCAGTGAGTACATCTACATATC
AATCCTTTTaagtttgaaaagaaatagttttaaatttaccaagaatcaaa
taaaatcaatttttatctCTGTAAGTGCTTCAATGCAACGTCTTCAAACA
ATTTCACGTCTGACACCGGACGCTCGAAAAACAATTCATGGCgttctata
attttttttggcttaaGCAAAGTAAGTATTCTTCAGAGTCACACTGCGAC
GAGTTCAAAACTTGAGTCCCCATAAAAGTATATCGCTGCAACGACTGCTC
GTCCTGTAAACTTTTAAAACTGCAATGATCCGATTTCTTTTAGGAATTAa
gcttatttttttaagaataatcTATTAATTTTATTGTTATTACCTTAGGC
TTTTGGTCAGTCCCGTCTTATTCCGTCATTTACAACGTAGAGGAATCCAG
GTAAATGctcaagatttttcaattcgtaTTTTGGATATTGGTTGTTTTCG
CTAACTaagtacagtggagtctccataactcgaacccgcacgggaaacac
aaatttgttcgagttaaggaaattttttgttATGGAGCAAGGTtgataag
gcattgttaactgacgGATCGAGAAAACTTGTTTGAATCAAGGGAATAAT
CGAGTTGTAGagtttcgagttaaggagacccTACTTTATTATACCCCTTC
AAAGGGACATTAAAACATTAGTAATAAAATATAAATGCGCAAATCAACTG
TCATTGAACGAAGCAATCCAACTCACGTATCAAAACCAACTTGGAAACAA
TAGTAACAATtaagaaacttttcattttcgtaTTTCACGTATTTTGCATA
ATTCTAACTATTGCTCTTCGGAATGCCTATAAACTTCACAAGTACTTGAA
TgggctctttcagaaaaaaattgaatatggtgGATGGAGGAtacaacatt
ttttggaaattcacCCCCagaaattgtgaattttgaacCCCAGGACAAAG
GATCTcgacccctggacaagcatcaattgaccccccccctctccggacat
tcaaaatcaccacTAATCAGAGAAAGTTTTTCACTAAACCAAGGCAAATT
TCTCTGGATTTCTccttaccccccggacaaaatatccaatatattcTCCA
CCtcccatgtacaaaaattttctggaagagcccaatgtcctttttcactt
ttctttccATAGGTGTACATGTTTGTGATTCAAGAGGATGAAGACTTTGA
TTTCTGTTTGAACAAAGCCAAAGTTGATGGCGTAATGACTGACTATCCCA
AACGTTTATccaactttttaaaagaatctAAAGGCTCTACTGGCGATGAG
ACAGATCCTATACTTAAGAAAGACTAGTTAATAATAGAATATATTTATTT
CGTGCCCATTATTCCACAGTAcactttgttcttttttataagaacaattt
gagaacAATTCTGAGACTGAAATCActcaatttcaaacaatttagTGGTC
aaagtaaaaattgggtataacgcctaaaatacctcaattgatcctataaa
taagaatagaataagaacaatttgaggctcaaagtgccaaaaaataggAA
CAGCTGAGCCTCAGCAAaactttactggttcttatgacAAAAAGTGTATT
ACAGATCTTTAGAG

Coding sequence (CDS) from alignment at scaffold_440:606482..612245+

>TCONS_00065587 ID=TCONS_00065587|Name=TCONS_00065587|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_440:606482..612245+ (Clytia hemisphaerica)
atgCTTGCTCTATGGATAACAATAGGGGTGACAGGAACCTACATAACAGC
TTCAATACTCTTTGGAAGGTTTCCTACCTTGCTtcacaaaaagaagaaac
aaaaatttcgcTGTCAGCACATCAGCCATCGGGGAGGTGCTGGAGAGAAT
CTAGAAAATACAATAACTGCATACAAAGATGCAATCAAGAACGGAACAAA
TATGATTGAATTGGATGTTCAATTAACTGCAGATGGAGtgGTTGTAGTAT
CTCATGATAACGAATTGGGCAGAATAACTGGAGCTGAGGGATTGATATCG
GAAACCAACTTTGAGgaTTTGCCTTGCTTACAACCAGTACAAGACATTAC
TTTTGATATAGGTGCAAAAATGACAAGTGATAGCAAAGACAACAAAATAC
CAACTTTGCGTAAAGTATTTGAAGAATTCCCAAACATTCCTATGAATATT
GACATCAAAAGAAATGATGATGAATTAATCGATAAGACTCTGGCTTTGAT
TAAAGAATTCCAAAGAGAAGAAATAGTTGCAGCTGGAAATTTCAGTGAAA
CAATTACTGGGAAAATTCATCAAAGGGCACCAAAGATACCATTGATATTT
TCAATGAAGAAAGTAATGATAACTCTGGTATTATTTTACACTGGCTTGCT
TCCCTTTATACCACTCAAAGAAGACTTTTTCGAAATACCACTACCAAGGG
TTATTTTAAggcATCCAGACACATTCGTCAACATAAGAactttgttgaaa
attgcaGACTGGCTTTTGGTCAGTCCCGTCTTATTCCGTCATTTACAACG
TAGAGGAATCCAGGTGTACATGTTTGTGATTCAAGAGGATGAAGACTTTG
ATTTCTGTTTGAACAAAGCCAAAGTTGATGGCGTAATGACTGACTATCCC
AAACGTTTATccaactttttaaaagaatctAAAGGCTCTACTGGCGATGA
GACAGATCCTATACTTAAGAAAGACTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041096	XLOC_041096	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00065587-protein	TCONS_00065587-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_440	supercontig	scaffold_440:606482..612245 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.6346	30.4901	21.6569	21.9728	4.5394	3.85268	16.6992	16.676	25.702	26.8094	38.8611	18.196	13.6342	14.2068	15.5113	20.2278	14.57	13.2246	10.9393	21.6007	14.0054	14.7546	23.8399	24.6685	15.8441	20.8951	21.9505	21.394	36.5673	27.7325

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR017946	PLC-like_Pdiesterase_TIM-brl
IPR030395	GP_PDE_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0008081	phosphoric diester hydrolase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006629	lipid metabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
molecular_function	GO:0008081	phosphoric diester hydrolase activity

Blast

[Close]

BLAST of TCONS_00065587 vs. Swiss-Prot (Human)
Match: GDPD1 (Glycerophosphodiester phosphodiesterase domain-containing protein 1 OS=Homo sapiens GN=GDPD1 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 5.034e-88
Identity = 137/308 (44.48%), Postives = 202/308 (65.58%), Query Frame = 1

Query:   46 ALWITIGVTGTYITASILFGRFPTLLHKKKKQKFRCQHISHRGGAGENLENTITAYKDAIKNGTNMIELDVQLTADGVVVVSHDNELGRITGAEGLISETNFEDLPCLQPVQDITFDIGAKMTSDSKDNKIPTLRKVFEEFPNIPMNIDIKRNDDELIDKTLALIKEFQREEIVAAGNFSETITGKIHQRAPKIPLIFSMKKVMITLVLFYTGLLPFIPLKEDFFEIPLPRVILRHPDTFVNIRT---LLKIADWLLVSPVLFRHLQRRGIQVYMFVIQEDEDFDFCLNKAKVDGVMTDYPKRLSNFL 960
            A +  +   G Y+  S L  ++PTLLH++KKQ+F  +HISHRGGAGENLENT+ A++ A+K GT+M+ELD  +T D  VVVSHD  L R TG    IS+  + +LP      D++F    +   + KDN+IP L++VFE FPN P+NIDIK N++ LI K   L+K + RE +   GN +  I  K ++    IP++FS+++V++ L LF+TGLLPF+P++E FFEIP+P +IL+  +     R+   L+ ++D LL+   LF HL  RGIQVY++V+ E++++    +     GVMTDYP +L +FL
Sbjct:    5 AAFYLLSTLGGYLVTSFLLLKYPTLLHQRKKQRFLSKHISHRGGAGENLENTMAAFQHAVKIGTDMLELDCHITKDEQVVVSHDENLKRATGVNVNISDLKYCELPPYLGKLDVSFQRACQ--CEGKDNRIPLLKEVFEAFPNTPINIDIKVNNNVLIKKVSELVKRYNREHLTVWGNANYEIVEKCYKENSDIPILFSLQRVLLILGLFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTMSRSQKFLIWLSDLLLMRKALFDHLTARGIQVYIWVLNEEQEYKRAFDLGAT-GVMTDYPTKLRDFL 309

The following BLAST results are available for this feature:

BLAST of TCONS_00065587 vs. Swiss-Prot (Human)

BLAST of TCONS_00065587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GDPD1	5.034e-88	44.48	Glycerophosphodiester phosphodiesterase domain-con...	[more]

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TCONS_00065587 (transcript) - C. hemisphaerica