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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065716 ID=TCONS_00065716|Name=TCONS_00065716|organism=Clytia hemisphaerica|type=transcript|length=1341bpRun BLAST on NCBI transcript from alignment at scaffold_443:119056..165655- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065716 ID=TCONS_00065716|Name=TCONS_00065716|organism=Clytia hemisphaerica|type=transcript|length=46600bp|location=Sequence derived from alignment at scaffold_443:119056..165655- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065716 vs. Swiss-Prot (Human)
Match: ENASE (Cytosolic endo-beta-N-acetylglucosaminidase OS=Homo sapiens GN=ENGASE PE=1 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 1.161e-77 Identity = 112/228 (49.12%), Postives = 149/228 (65.35%), Query Frame = 2
Query: 137 DENRPKTLLCHDMRGGYLQDRFDQGYPSTDCYSFYHWHLVDVFCYFSHHFVTIPPVQWINAAHKNGVKMIGTIITEWDEGRKNLQKVLKSKE-AVEVFVKCLVGIATKMKFEGWLVNIECHVEDEEMDQLVYLVKHLTDEMHKSNNDAQVIWYDSVIKSGQLRWQNKLCADNRLFFDVCDGIFLNYNWSPIHLTESLAQAKQRKHDVYVGVDIFGRGCPGGGGWNTNK 817
RP+TLLCHDM GGYL DRF QG Y+FYHW +DVF YFSHH VTIPPV W N AH++GV ++GT ITEW+EG + + L E + + LV I +F+GWL+NIE + + + +++LT ++H+ V+WYDSV++SGQL+WQ++L NR+FFD CDG F NYNW HL L QA +R+ DVYVGVD+F RG GG ++T+K
Sbjct: 119 SSQRPRTLLCHDMMGGYLDDRFIQGSVVQTPYAFYHWQCIDVFVYFSHHTVTIPPVGWTNTAHRHGVCVLGTFITEWNEGGRLCEAFLAGDERSYQAVADRLVQITQFFRFDGWLINIENSLSLAAVGNMPPFLRYLTTQLHRQVPGGLVLWYDSVVQSGQLKWQDELNQHNRVFFDSCDGFFTNYNWREEHLERMLGQAGERRADVYVGVDVFARGNVVGGRFDTDK 346 HSP 2 Score: 70.8626 bits (172), Expect = 1.161e-77 Identity = 47/150 (31.33%), Postives = 70/150 (46.67%), Query Frame = 3
Query: 822 ALKIIREHDLSAAIFAFGWVYEKLGESVYHINNEMFWELLSDDLYPHYINRLPMVTTFNRGYGHSLFKNGKKISNRPISNLSLTDMQPTFPTNRYQVISGCPIITELAYKTDDAYNGNGCLFFSGTFEDAEQTNDVMFRLFKTDLRLTKK 1271
+L++IR+H S A+FA GWVYE L + + N + FW L L H I LP VT+F G G G++ + P +LS ++QP F +R + T +DA++G L G + +V RLF + K
Sbjct: 347 SLELIRKHGFSVALFAPGWVYECLEKKDFFQNQDKFWGRLERYLPTHSICSLPFVTSFCLGMGARRVCYGQEEAVGPWYHLSAQEIQPLFGEHRLGGDGRGWVRTHCCL--EDAWHGGSSLLVRGVI--PPEVGNVAVRLFSLQAPVPPK 492 The following BLAST results are available for this feature:
BLAST of TCONS_00065716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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