TCONS_00065723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065723
Unique NameTCONS_00065723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065723 ID=TCONS_00065723|Name=TCONS_00065723|organism=Clytia hemisphaerica|type=transcript|length=1826bp
ATTTTTTCATCAATGGATATAAATGaagaaatttgataaaaattatgaTA
CTGCATAGTTTAAGTGTTTGAGTTTCTATTGTATTTTAAGAAAGTAAATT
ATCAACTGTATACCAATTACGTGATCaacataaaaaaattagaagttTTG
TGTACTAGCAAAAGTCAAAGATATGGGTGGACTATTTTCATCcaagaaaa
aaactgaaaataaacaaCCAAATCGAATTACAGAACAAGATAAGGCTGTT
TTGtcatTAAAGCAACAAAGAGATAAGTTGAAACAATACCAGAAAAAGat
aaACTTAACATTggaaaaagaaagacaatatGCAAAACAGTTGCTCAAAG
ATAATAAGAAAGNTTCAgtgctattacatcacttttgttttcgacccctt
gcatttgccacccatcgcaagtgaaaaataccccgttcatttgccaggat
gtgcctgactgactgataagaaagaaaaaggaaagaaagaaacgagaaga
aaattagttccNAACAGTTGCTCAAAGATAATAAGAAAGACAAAGCGAAA
CTACTGTTGAAAAAGAAACATTATCAAGAAAATTTATTAAAGAAAACTGA
TGGTCAATTAGAAAATATTGATCGACTGATATCAGAAGTAGAATTTGCAC
AAGTTGAATTGAAGGTTGTTGAAGGATTAAAACAAGGCAATGAAGCGCTG
AAAAAATTACATGAGATCATGTCAGTTGAAGACGTGGAACGTATTATGGA
CGAAGCACAAGAGGGAATCGAATACCAGAATGAAATCGATGAACTACTAA
GCGGAGGTTTGACTGCTGAAGATGAGGAAGATATTATGAACGAACTTGCT
GAATTAGAACGACTTGAACTACCCTCTGTTCCTGACACCGAAATTCCAAC
AGCTGATGTCGATGACCAGTTACCCGATGTACCCTCCGCTGAACCTGcaA
CATCATcgaaaacgaaaacaaaagaaacagaACGAGTTGCCATGGCAGCT
ACTTGATACGTTTACACGTTTCCTAGACAGGACAGAACGCCACTAGCGGT
ATTAGAATCAGAATGTAGATTTGTCATATTCAATGCTCCAAGTATGATTG
ATATTCGAATTGAATTATGGGAACACGTTCTTTTGATTCATGATAACGAT
TGGTTGAAAAACAAAGACTTTTGtaaattaacataaattaaGTTGAGTAG
GATTTAACAGAGTACTCAAGACAAACTGAAAGTGGGAAGCATTTACTTTA
TTCATATATTTCGAAAATAACAATAACTTGCGGTTAAGTTGCGGTTTACT
TATCAAATTAGAGTTTTTTAAAACCTTTCAAGTCCATGGGAATTTCTTAT
ctcatcaataacagattttatAGTTTctgtttcctttttttttgtaattt
tcaaataattaaatgggctgttccattaaatttccatacagggggatgga
cgaacctttttaaggcaaataagaATTCTGTGAAATATGTGAATACCCCC
GTGGAAAACGGCAAAATCGCAAAAGaagccttggaaaaattctttacaTA
CCTTAAAAAAGTAAGGCGTGGACGAGCTAAAATCAGCCTTTTACCCctta
gaaattttagaataaactTTTACCtccttgaaaaatgaaaaaatactccG
TTATACCCCTTGGAAATTCTTCTccgattaccccctggaaatgttcgtcc
acccccctgtatggatataaaatggaatggcccaattcaTACAAGAAATA
TTATCagcattatttatttttaaaatataatttcttaCCTAGAAAATAAT
ACTGTTATCGTCCTATTTTTTGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_443:278096..293189-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065723 ID=TCONS_00065723|Name=TCONS_00065723|organism=Clytia hemisphaerica|type=transcript|length=15094bp|location=Sequence derived from alignment at scaffold_443:278096..293189- (Clytia hemisphaerica)
ATTTTTTCATCAATGGATATAAATGAAGAAATTTGATAAAAATTATGATA
CTGCATAGTTTAAGTGTTTGAGTTTCTATTGTATTTTAAGAAAGTAAATT
ATCAACTGTATACCAATTACGTGATCAACATAAAAAAATTAGAAGTTTTG
TGTACTAGCAAAAGTCAAAGATATGGGTGGACTATTTTCATCCAAGAAAA
AAACTGAAAATAAACAACCAAATCGAATTACAGAACAAGATAAGGCTGTT
TTGGTAAGATATTCTGTAGTGGTTGTTTTTAACAAGTTTGAAATTTTATT
GAATCTGTATCAATCTTTTTCAACTACGTTTTTTTATGTCATTTTTTTTT
TTATCTTCCTCTTGCCTTTCATTTTTTTCCTTCTCATTTTATACAGATAT
CTTCCTGAATTTTGAATTTTGAAAGATTTGGGGNTTAACTTGGAGAGGGA
ATGTTTGTAAACATAGATTTTTTTTCATAACAGTTATTTTGGGGGTCGGA
TTTAGGCAGGGCTGTCGGATTTAGGACCACTCACGGTACTGAAGAAAGCG
GGAATTTGATGAGAGAGTTTTAGATCTAAAGCCTGAACTGACAGTCAGGC
ACATCCTGTCAAATGCACGGGGTGAGCATTTGCATGGGGTATTTNGGCTT
CTTAAAAAACAGACATGCAGCACCATGGAAAGGCCCAGTGCCAGGCAAAA
AAATTAGTATGAATTGTACAACTGGCGATTTTATTTTATTTTTTTTTTTA
ATTGTATTTTCAACAAAATTTTTTTTTCTTTCAGTCATTAAAGCAACAAA
GAGATAAGTTGAAACAATACCAGAAAAAGGTTTGTATGATGGATGACTGT
TTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCACTGCCAGAAG
AAAGTAATCCTTCTCAGATAAAATATTCTTCTAAACCAGATAATAAAATT
TAGAATTTTTTTCTTCAGATAAACTTAACATTGGAAAAAGAAAGACAATA
TGCAAAACAGTTGCTCAAAGATAATAAGAAAGNTTCAGTGCTATTACATC
ACTTTTGTTTTCGACCCCTTGCATTTGCCACCCATCGCAAGTGAAAAATA
CCCCGTTCATTTGCCAGGATGTGCCTGACTGACTGATAAGAAAGAAAAAG
GAAAGAAAGAAACGAGAAGAAAATTAGTTCCNAACAGTTGCTCAAAGATA
ATAAGAAAGAGTAAGTTATTACTTTTTTTTTCCCAAGCACTTATTTGCGG
AAGATGTAATTTTAGGTATCTATGGATCGTATGTAAATTAATTATTTTTG
TTATCAAATTCTTCTATGTAATTTTATATAGCTAAATTGAAACCTTCTGT
GATATGCCTGAAACAACAAGGGCCATCTATTTTTACAGTGGAAAAGCTTT
TTTTAAGGCAATCTTGTGATTTTTAGTTTTGAAATTTATCCTAGGGATGA
GAAATCTAATTTTCCTTGCGGTAATTTTTAGCTTATTTTACCGTGTCCCT
TTGCCTTTAGCAACTTGCCTCGATATACAAGAAATAAATTAAGTGTGATC
TGTGAAAAGTAAATAACACACGTGGATATACTAACATGATGATTATTTAT
GTTGAAAATCTACTTTTTTTACATAGCAAAGCGAAACTACTGTTGAAAAA
GAAACATTATCAAGAAAATTTATTAAAGAAAACTGATGGTCAATTAGAAA
ATATTGATCGACTGGTAAATAATTAAACATCGATTTTATATTTGATCTAT
TTTTTTCTTTAGAGATGTTTACTAGAAGAACTCTATAGGCAATTCTAAGG
TTAAGCTGCATCATGGGTAACCAGGACTAGTTCCATTTGTCAAATAAAAA
ATCTTCAAAATTGGGCCTTTGATTATTTCTTTCAAAAGACAATTTCATCT
TTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGAAAGTAATCCTTCTCAGATAAAATATTCTTCTAAACCAGATAATGAA
ATTTAGAATTTTTTTCTTCAGATAAACTTAACATTGGAAAAAGAAAGACA
ATATGCAAAACAGTTGCTCAAAGATAATAAGAAAGAGTAAGTTATTACTT
TTTTTTTCCCAAGCACTTATTTGCGGAAGATGTAATTTTAGGTATCTATG
GATCGTATGTAAATTAATTATTTTTGTTATCAAATTCTTCTATGTAATTT
TATATAGCTAAATTGAAACCTTCTGTGATATGCCTGAAACAACAAGGGCC
ATCTATTTTTACAGTGGAAAAGCTTTTTTTAAGGCAATCTTGTGATTTTT
AGTTTTGAAATTTATCCTAGGGATGAGAAATCTAATTTTCCTTGTGGTAA
TTTTTAGCTTATTTTACCGTGTCCCTTTGCCTTTAGCAACTTGCCTGGAT
ATACAAGAAATAAATTAAGTGGATCTGTGAAAAGTAAATAACACACGTGG
ATATACTAACATGATGATTATTTATGTTGAAAATCTACTTTTTTTACATA
GCAAAGCGAAACTACTGTTGAAAAAGAAACATTATCAAGAAAATTTATTA
AAGAAAACTGATGGTCAATTAGAAAATATTGATCGACTGGTAAATAATTA
AACATCGATTTTATATTTGATCTATTTTTTTCTTTAGAGATGTTTACTAG
AAGAACTCTATAGGCAATTCTAAGGTTAAGCTGCATCATGGGTAACCAGG
ACTAGTTCCATTTGTCAAATAAAAAATCTTCAAAATTGGGCCTTTGATTA
TTTCTTTCAAAAGACAATTTCATCTTTTGTAATAATCGATGTAAAGTACT
CTTATTTAAGACCTTTAAATCTCTGCTTAAATGCTGCTAAACTACTCGAA
TTTAGATCATATTACTATTTTGAATTGCTAGTTAGTTCTTTACTTCGTTT
TAGATATCAGAAGTAGAATTTGCACAAGTTGAATTGAAGGTTGTTGAAGG
ATTAAAACAAGGCAATGAAGCGCTGAAAAAATTACATGAGGTATATTTAT
GATACTGTGAACTAAAAGCTTATAATATTATACTTTTTTAAGCTTATAAT
ATTATACTTTTTTCTAAGGAAAAGATTGAAAACAATTGAATTAAATTGAA
AACTTATTGATCAAATCACGTAATGCTTTCCTAGAATGATAAAAAAGAGT
TTCTGAAACGATAAAAAACGATATATACGAGGCAATATGACAAAGAAAAT
GAAGAAACCCGTATATGAGTTCCTTCAAACCTCTCCATTCGAAGGTCTCG
AGAGTCGGGAGTCAAAAAACTCTTCAAAAATTGTGTTTTCTCTTAATTAA
GATCATGTCATAAGATCATACCTTTATGAGCTCCCATAGAGCCCTCTCTC
CAAAAGGCCCCGCTCGACTGTCATGAAGAACCAAAACTTTTCACCATAAA
AACTTGTATTTTTTTCTCACTTAGATCATGTCAGTTGAAGACGTGGAACG
TATTATGGACGAAGCACAAGAGGGAATCGAATACCAGAATGTAAGAATTA
CTTTTATATTTATTACGGTTCTGTTTCCATGATCTAAATTTGGATGTATA
AGATACTGCTTTCATAAGGAAAGATTTAATAAATTTGCACATTCATAAAC
GATTTTTGACAAATTATGATTCATTCATCTTTTTGACTGTCCTAGTTTTA
AAGTATACTAAAATTAAAGTGAGTAGGCTTTCAATAAAAAAGAATCAACA
AAAAATTCTTATTCTAAGGTCCATAATATCTCGAGAAACTTGTAGTAGAG
AGCCTTCATTTGCGATCAAAAGGTTTTGGACTATGTAAAAAAAATTGTAA
ATCTACAAACAAAGGTGAAAAGATACCCCTCTTACAGTTTTGTATTTCTC
TAAGCTCAAATTCAAGTGTTCTTTTCACTCGCAAATTTGCTGAGTGACTC
TACAAATTGTAGACCTCAAAGAGTAGAAGAAATTATTACATATAGCCTGG
AAATCTAACAAATAATATATCATTGAAAAAATTGATTGATAAAAAATCAA
TATGTTGTTGCTTTCATTTATCTTTATACATGGCATGGACCAGGGGTTTA
GGTACCCCCTAAGAAAATAGGTACCCCTTGAATTTTAGGTACCCCCAAAC
AACAGACGTTAGTAGGTACCCCCTGTGATTGGTACCCCCTGTGACTTGAG
TATATGTCAAGAAATGAAAAAATTGTATAATTTTACAATTAAAAAGAATA
ATGACAGTTAGATAAAAGCAAGATAAAATATAGTTCCCAAGCCCCCAGAC
CTTACTGCATAAAAGTTAGATTAGTTAAATTTAAAAAAAATCCAGCCCCC
AGCCTTTTTCAGGAAGATTTTGGTTGTAGCCTGCGGGCTGGGTGGGGAGG
GGGGGGGTTCATGCCATGTTATATTAATATCATTAGAAAAATTTCAAGTT
CACTTGATTCTCTATTTGTTAACTAAGTTGTTTTCGTTCAAGTATTTCAA
ATTTTGAGAACAACTTCCATGAGAATTGCTACCTTTTATTAAATGTCTGT
TTTTATTCAAATTTGAAAGAGGATAATTTGAGCGGGTCATCACTTGCATA
TTTTCGTGAAATTTTTCCTCCAGTCCATTCGGTCACCCCGATCTGTTCGA
ATTGGCAACGAGTGAAAAAGAGAATAAACGTTTTGACAACATCTCTGGAA
AGAGAGAATCCAGCACATCTATGGTTGCTCGGTGTAGATTGTCCGAGAAA
ACGACCACCGTAGGTGAAGTTGTATTTTTCGGACTCTTCCGGGTTTCGGT
GCATATCAAATTGCTCGGGATTCTCGAAAAGTTGATCATCCCGGTGTATG
AAGTAAGGTAGCGCGCATAACAAGTCTCCTTTGTTAATCCGGAATTTCCC
CGATGTTGAATCGAGCTGGAAATCGGATTTCGCTTTACCATAAATGAAAG
CTTTAGATGACCAACGTAGCATTTCAGTGAAGAATTTATGGAGATTTGGT
AATGCTGATAGATTGGTTTGTTCTGGATCCTTGAAATATTGATCAGCTTC
TGTTCTCAGCAGTTGCTTGTCATCGCTGGTTAATCTCAGGTAGCAATACA
ATGAATTGAGAACGAAGATTGTAATAGCGTTGCTGGCATCCAGGCATACG
ACATAGCATATATCTTTGAACATTTCTTCTTGGGTCAACCCGCTGTTTGA
GAATTGGATAGATAGGTTTTTTAATGAATCCACTTTGTTGAAAATCGTCA
TGATGTTTTCGATCAAGGTGTCGGCTTCCCCAGGCATCTTTTCCATAGTT
AACATACCTTTGAAAAAGAGAGAGATCAACATGCTTTTAATTACTGATTG
AAGCCAGTATCTACCTTCCCATTGGTCAGGATCAGCATACAAGCTTACAA
TTTTATCAATGATCAAGTTGGCTTGTTTGAAGCCAACTCGTTGGGGTCTC
ACCAAGTACCTGAAGTTGCCCAGCTGGCACACAACGTTCTTTCGACCTTT
ATTTTATTTATTTGAGTTGCCTGAAGATTGCCTTTATCTAATGTTCACAA
CGTCCATAATAACGTTAGATGAATGTTGAAATAAAGTTGTATGCCAGCTG
GGTGGCTATGACTATAGATGTTTGGTGGCAAAGTGTGCGAGCTCCTGTGA
ACTTACCTTGTGTATATTTCTCGAGAGGTGTTATGTCTTCAATGTGAACA
CCCAACAACATGTGACAAATAACTCGTTTAGCTGCAGTCGAAAACATTCC
TTCCCAATCCACAGATGAAGCACCACCAATACCATGTTTACTGAGTACCT
TGAATTCTTTCTCAATTATGGCTACCATGTTGGGTTTTTGTTTCTCGTAA
CTCTTAGCAACGAAATTCATGATAAAAGGTTTATGTATTTGATGACCTTC
GCCAACACTGAACACACAAGGCGTTTGACCTAACATCATTTCTGGACGTA
GCTCCAAGAAACCATGGCCGGTTTTGCTTCTCTCCGTTTTGGTCATGTCC
AATACAGCGGCAACAGCTACATGGTCACACACAAACGTTGTCCAATCGTT
GAATATTTTGGCAGAGAATACAGTACTCTGGTGTTTTTCTATTTGTTGTT
GGAAGAAATCCCATCCGTTCCATTTGAGCTGGATGAGATTGAAAAGACTG
ATTTTCCACCACTGGTGTGGTACGTCTCGTAATTCTTTGTTTTTCGTCGA
TGTCATTTTAATTTTTCTTCCCTAGAAAGAATTTTCAAAATGCTATAGTC
ACAAATTATTCTGTAAAGCCCGANATCGTTAGATCGTGCATCTTAAATTA
CACCAACCCCTTTATACTTACATTTTGGATACTTCAAGGTCAGAAATTTT
TGAAAGATTGGGGTAAAATCAAGTTCACACCAAAGAATTTTCAAGAGGTA
ATCCATCATGGAGCTCAGTTAGTTGTTGCTTTCATTTATCTTTATATTAA
TATCATTAGAAAAATTTCAAGTTCACTTGATTCTCTATTTGTTAACTAAG
TTGTTTTCGTTCAAGTATTTCAATCTTTGAGAACAACTTCCATGAGAATT
GCTACCTTTTATTAAATGTCTGTTTTTATTCAAATTTGAAAGAGGATAAT
TTGAGCGGCTCATCACTTGCATATTTTCGTGAAATTTTTCCTCCAGTCCA
TTCGGTCACCCCGATCTGTTCGAATTGGCAACGAGTGAAAAAGAGAATAA
ACGTTTTGACAACATCTCTGGAAAGAGAGAATCCAGCACATCTATGGTTG
CTCGGTGTAGATTGTCCGAGAAAACGACCACCGTAGGTGAAGTTGTATTT
TTCGGACTCTTCCGGGTTTCGGTGCATATCAAATTGCTCGGGATTCTCGA
AAAGTTGATCATCCCGGTGTATGAAGTAAGGTAGCGCGCATAACAAGTCT
CCTTTGTTAATCCGGAATTTCCCCGATGTTGAATCGAGCTGGAAATCGGA
TTTCGCTTTACCATAAATGAAAGCTTTAGATGACCAACGTAGCATTTCAG
TGAAGAATTTATGGAGATTTGGTAATGCTGATAGATTGGTTTGTTCTGGA
TCCTTGAAATATTGATCAGCTTCTGTTCTCAGCAGTTGCTTGTCATCGCT
GGTTAATCTCAGGTAGCAATACAATGAATTGAGAACGAAGATTGTAATAG
CGTTGCTGGCATCCAGGCATACGACATAGCATATATCTTTGAACATTTCT
TCTTGGGTCAACCCGCTGTTTGAGAATTGGATAGATAGGTTTTTTAATGA
ATCCACTTTGTTGAAAATCGTCATGATGTTTTCGATCAAGGTGTCGGCTT
CCCCAGGCATCTTTTCCATAGTTAACATACCTTTGAAAAAGAGAGAGATC
AACATGCTTTTAATTACTGATTGAAGCCAGTATCTACCTTCCCATTGGTC
AGGATCAGCATACAAGCTTACAATTTTATCAATGATCAAGTTGGCTTGTT
TGAAGCCAACTCGTTGGGGTCTCACCAAGTACCTGAAGTTGCCCAGCTGG
CACACAACGTTCTTTCGACCTTTATTTTATTTATTTGAGTTGCCTGAAGA
TTGCCTTTATCTAATGTTCACAACGTCCATAATAACGTTAGATGAATGTT
GAAATAAAGTTGTATGCCAGCTGGGTGGCTATGACTATAGATGTTTGGTG
GCAAAGTGTGCGAGCTCCTGTGAACTTACCTTGTGTATATTTCTCGAGAG
GTGTTATGTCTTCAATGTGAACACCCAACAACATGTGACAAATAACTCGT
TTAGCTGCAGTCGAAAACATTCCTTCCCAATCCACAGATGAAGCACCACC
CATACCATGTTTACTGAGTACCTTGAATTCTTTCTCAATTATGGCTACCA
TGTTGGGTTTTTGTTTCTCGTAACTCTTAGCAACGAAATTCATGATAAAT
GGTTTATGTATTTGATGACCTTCGCCAACACTGAACACACAAGGCGTTTG
ACCTAACATCATTTCTGGACGTAGCTCCAAGAAACCATGGCCGGTTTTGC
TTCTCTCCGTTTTGGTCATGTCCAATACAGCAGCAACAGCTACATGGTCA
CACACAAACGTTGTCCAATCGTTGAATATTTTGGCAGAGAATACAGTACT
CTGGTGTTTTTCTATTTGTTGTTGGAAGAAATCCCATCCGTTCCATTTGA
GCTGGATGAGATTGAAAAGACTGATTTTCCACCACTGGTGTGGTACGTCT
CGTAATTCTTTGTTTTTCGTCGATGTCATTTTAATTTTTCTTCCCTAGAA
AGAATTTTCAAAATGCTATAGTCACAAATTATTCTGTAAAGCCCGAAGAG
CTAGATGTAGTGCATTAAGCTCTACCAAGCAAAAAAAGTCAACATCGCAA
AAAATATTGGTGCTATTGTTTTCGAAAACCCGCGAAGCTTCTTATTGGTC
AAGCGCTCAAATTCTATTGTAATGTCACGTGACCTACAAAGGATTTCCTA
CCTAACCTCGGCGCACTTATCAGCCAAAGCACGACATCTAGCCCATCGGG
CTTTATAAATTTATGGCTATAATACGGGACAATCATTAAGAACATTAATA
AGTCGCAAACCATACGAGTTACGAGGACTGACCTTAGAAATATGCCTTGT
TTCATTCAGAATAATTTTATCTGAACTCACTGGTTTGTAAACTACAATCA
AGTGTATCTCAAGGCCGTAATATTCGAGACAAAAAGGGGAATTCTCTGTA
AAACTTTATTAAAGCCAAGAAAGATTGCCAAGGGTAATCAAAATTACCCT
TAGACAGAGCAAAATTACCCACAAACAGAGCAAGTTTACCCCCCGGACAA
GGCAAATTTTGTAGATTTTTCACTATCCCCCCTGGACACTATATCCTCCA
CCCACCCCCCATGTTCGGACATTTTCTGGAAGAGCCCAATGTAGTGTTTT
AACATTCAACTTGATACTTTGGGGCTTTGGAGTTTTGAAGCTCAAAATCA
AAAGTGTTCCATTAAGACCGAAAATATAACCTGGAAGCCAATAAACTTCT
CTCATAAAGTGTTCCATTAAGACCGAAAATATAACCTGAAAGCCAATAAA
ATCCTCTCAAATTGAAATGACCAATGAAAGAAAGTGGAAATACTTAAACC
AGCGAAAATACCCAGAAATGCCGATTCATTTTAACAATGATTGTAGTTCG
CTTTGTCTAAATTTTAACGTTATGCTTTTTTAGATGATTTTTTAGATCTG
ATTTGAATGTAATTACATTCTATGTTTAGCACTTATTATCACGGTAATCA
TCACAAAAAATTGTTGGTCAGATCCATTTTGATAAGAAGGTAGCAAGCTA
GACGACAAATTCAGACATAGTAGAAATAATAGAGGGAATAAATTTAGTCT
ATACAAACTAAATCCCATAACAATAATATACTACTGTATTTGTATTACAC
GCATTATAAACGACTCCAGTCTAATTAAAAGGTTAATCTTGATTTTGCCA
GCAGTGCCAATAAAAAAGATAAGTTTGCGACCATAATTAAGGGCCACTAC
GTTTTTTATATAATGTTCAAAGTTGTCGCCTCGAAATTCAGCAAAACACA
TTAACTATCAATAATTCAGGCCTTTTTTTGTGTAAAGTCTAATTTTCTCT
CTCAAAAGAAAAACATTTTGACTACTGTTAGAAACTTGCACCAAAACCAT
TATCCGAGCTTACCTGGCGTTCCCACCTACAATCCAATGTCTTTTGAAAT
CATTATCTCTTTGCTTACTTTCGTTATACAGTGTATCCGGTAAAAAAGCA
GAACAGTTAAAAATAAATTAAAATCTCATAATCTTACTAAAGTTTCGAAT
AATAAACTTACCAAAGTAAATGTTAAAAATCAGACACACCGCGAGTGACT
TCACTCATAGAGTACTATTTTCATAATAAAAAGCCTAAGAAAAAATGACA
TACTTTACTACGGTAAAATAATCTGTGACAATTAAAAGGACAGCCGATGT
AAAACCACTAATTGAATGACATCAACTTTAAAGTTTAGTATAAGTACTAG
TAATCGTATGGTTTGGAGTGCAATTAACGATTAATCACGAGTAACAAAGG
AGAAAATAGTAATTTGCACGAGTCCGAAGGACGAGTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGCAAAAAGTGGTAATAGTGCAATTAACGATTAATTGCA
CTCCTCTAAACCAATCAGATTCGAGTAATTTTGCACGGCTGACGATTAAT
AAAGTAATTAGCAGAAAATATTAAGACAGGTAAGTAAGACGTCATATTTC
CAACAATAAAATAGGTTTTTAGAAAAAGAAATTGACTAATAATGTCATAA
AGATCCATGTAAAAAGTATGACGATTTTGTTTTGATTAAATTCTGTCCTG
CTTTTGACCGAACACGCTTCACACACTGTTTTACAAATTACGAATCGCCT
TGCTTTTCCAACTTTAATGATAAAGACTTTTAGATTTTTTTACTGTAATA
GATTGTTATTATTTTCGTCTGACAGTAGGCTATATAGATTAGAATCTTTT
CCAAAATTGCAGCTTCGTTTTGATGGTTATGTGGTTTCTGAAATGAAGTT
TTGATTAGAAATGCAAAATATTATTGGTTTAAAATGAATAAAAATGTGTT
TGAATATAATAGACTGAGAGAAAATCATTTTGAGGGGAAGAAAGTGCGTA
CTTCGCAACATTAAAAAAGAACGACAAATTTCAACATCCACAACCCGACC
GAAAACCGTAACACCCCTACGTATTCATTCCTCTTTGTATTTTGTTTAAC
GACTAACAGTTTATAAAATGAAAATATACGCATGCGTTTTAACTTTCTTT
TGAAAATGAAACAATACCTTATCGGGGAAAAAAATGTCGGAAGAAAGTGA
CGAAAATTTTGAGGGGGTGACGAAATTTTTCCCCGACATTTTTTCACCCG
ACCAAAACTTGTACCCGATTTTTTTATCCCCGGCCAAAACATTTACCCAA
TATTTTTTTACCGAAATCAGTGCTTTAAACGTCGAATTATTAGATCCATT
TTCGAGCTAGCCAAGGAAACCATTTCTTTTGGACAATTTAGTCGGGTGAA
AGTGACAAATTTGAAATTTTGGTCGGGAAAAAGTGACAAAATTGCCTCTA
GATGACAAAATTTTTCCCCGACGAAAAAAAAACCCGACTAAATAAAACTC
CGACATTTTCTTCCCCGATAAAGTAGATGCGAAGAAGACTCTTTCTCTAT
GTGGTTTAATCAATCAAGTTGATACTTTATTAAGGTGATGTAGAGATTTT
CATCACGTCAAATCTTTCGGTCATTTTTGAAATAGGCTTGCCCCCCCTGC
TACTGTCATTTCTCTAATTCAATGCGTCATCTAATAATAAATATGGGTCA
ATTATTTTGACAAGTTTTGTTTAGTTTATTTCCTTTGAATATGAGTGTGG
ATACTTTTTGAATCTACCTCAAAGGTCCTAAAAGCCCGCGCCCGTTCGTT
CGTTCGTCCGTCCGTTCAATTTCCACACTATCAGGCTATCGTGTGGAGTC
ATTACGTAATATTTTCACCGCTAGAGTCAAAATGGTATCCACCTAGCCAC
AAAAAGTCTTTTACTGTCAACATTCTCTAAAAGTTCGCTCAACAATCAAA
CGCGCCAAAATATCACACATTTGAAAAGTCCTGTGTGTACCAAAACCAAG
CTGGTGCTTGATTGGCAAAATAGTTCTACCAGCTCGTCTCTCAAATAATT
GTTGGACCTACCCCGGTGGAGGTCTTATAAATTAACCTGTGTTTGTTCGT
CCGTCCGTCCGTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATCA
TAGGAATCTTTTGTTTTTTGGTACAAAGGTGCAAAATGGTGGTGGCCAAA
ATGTGACGGAGCCCGATTTTCGAAAAAAAATTTTGTTTGGCAAATTTGGG
CTAAAAAACGGCTAAAAAACGGGGTTTTTGGACTTTGTGAAAAATCGGAA
CATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTA
AAAGATGGCTCAAGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTATCTATAAGAATCACTAT
TAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGA
GATAGATGTTTTTTTTGTTCATGAGGGCTTACTTTTGAAGAATATGTGTG
TTCAGACAGGAAATTTTAGTTGCTTGGCGTGTTCTTATAGAAAAACTGGC
CAAATTCGATATTTTTTATAAGCACATTATCATTTACTTAGGTATTAGCT
TTTCTCGAGATTGGCTCTTTCATTCTTTATGATATTTTGCACAAAGATGC
ATAACTTTCGAATGTGACGGATAGGAGCCCGATTTTCAAAGAAAATGTTT
TTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTTTGAAATAT
TGGATCATTGTTTTTTTCTGATTTTTTGCATGAAAGTAGGTAAAAGATGG
CTCAAGCAGATTTTTGTAAAAAAAGAGTTTTTCGGCTCAAAAAACGCATC
TTAATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCCG
AATTACTCAATTTTTTGATGAGATTTTTTTGGTCACGAAGTTTTGAATAT
GAAAGAATATTTCAAGAGCATGAAATTTTGGTTTCTAAACTTTTTTTTAT
AAGAAACAAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAAT
GATTGTTTAGTGGTCACGTCACGTAGATATCAATTATAAATGTGTTAAAT
GCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTATTATTTGATTGT
TGAGCGAAACTTTTTATCTATATAACCGTACACAGTTCTCCATTCACATA
CTAGCAAAAATCAGGTCATGAATCAGCAAAACAGTTTACTATCAACACAA
CAAATCCCTGGTTCGCAACGTACTGGCTAATTCTAACCCAGTCTTTTCAC
GGCTTCAGTGTTGATAGGTGCGAGTCTTATGAGGAATATTTTCTCTTTCT
TTTTCACAGGAAATCGATGAACTACTAAGCGGAGGTTTGACTGCTGAAGA
TGAGGAAGATATTATGAACGAACTTGCTGAATTAGAACGACTTGAACTAC
CCTCTGTTCCTGACACCGAAATTCCAACAGCTGATGTCGATGACCAGTTA
CCCGATGTACCCTCCGCTGAACCTGGTAAGTCTGACCGATTTTGTGTCTC
CAGCTGAATAAGAATGACCTAGAACTAGCTGCTGTTTATGAACTAAATTT
GGTAAGTTTCCCTGGTTTTTTAACCTGCTTCCCTTTAGCCTTGCCGAACT
AGAAAGTTATAATACTCCTTATTTTCTAAATTCTGATCCCGGCAAGTTGC
TCTGATTTGACTATTCCAGAAAAATTAACCCCCGTTGTAGTTGTAAGCTA
AGTAGATCTAGCGCTCTCGATGCGGGTACCACTTCAAAAAACTCCGATCA
AAATATTTTGGTTGGTCGGGATTGAGAAACTGCATCCAGGATCTATATAA
AGCTCAGTGATATCACCAGAAGGCTCTCAAAAAGAATTGCTATAGAAGTG
AAGAAGACATTTAAATTGCTATGTTTTTATTTCTCAACGTAACTCGACTT
ACCCCTAAATGGAAGTATCCCACTACTACGCAAGAAAGGGCCAAAAGGGC
CTTAAACAGTCATATTACCAAATATAGGGCAAGGTTGGTCATTGTATTGA
ATTTCTACAGGACTAATTAGTCGAAAAGTGAATGAAATGGTATTTGTTTG
TTTTCATTTTTTCAGCAACATCATCGAAAACGAAAACAAAAGAAACAGAA
CGAGTTGCCATGGCAGCTACTTGATACGTTTACACGTTTCCTAGACAGGA
CAGAACGCCACTAGCGGTATTAGAATCAGAATGTAGATTTGTCATATTCA
ATGCTCCAAGTATGATTGATATTCGAATTGAATTATGGGAACACGTTCTT
TTGATTCATGATAACGATTGGTTGAAAAACAAAGACTTTTGTAAATTAAC
ATAAATTAAGTTGAGTAGGATTTAACAGAGTACTCAAGACAAACTGAAAG
TGGGAAGCATTTACTTTATTCATATATTTCGAAAATAACAATAACTTGCG
GTTAAGTTGCGGTTTACTTATCAAATTAGAGTTTTTTAAAACCTTTCAAG
TCCATGGGAATTTCTTATCTCATCAATAACAGATTTTATAGTTTCTGTTT
CCTTTTTTTTTGTAATTTTCAAATAATTAAATGGGCTGTTCCATTAAATT
TCCATACAGGGGGATGGACGAACCTTTTTAAGGCAAATAAGAATTCTGTG
AAATATGTGAATACCCCCGTGGAAAACGGCAAAATCGCAAAAGAAGCCTT
GGAAAAATTCTTTACATACCTTAAAAAAGTAAGGCGTGGACGAGCTAAAA
TCAGCCTTTTACCCCTTAGAAATTTTAGAATAAACTTTTACCTCCTTGAA
AAATGAAAAAATACTCCGTTATACCCCTTGGAAATTCTTCTCCGATTACC
CCCTGGAAATGTTCGTCCACCCCCCTGTATGGATATAAAATGGAATGGCC
CAATTCATACAAGAAATATTATCAGCATTATTTATTTTTAAAATATAATT
TCTTACCTAGAAAATAATACTGTTATCGTCCTATTTTTTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041174XLOC_041174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065723-exon-scaffold_443-1575043694:292937..293189TCONS_00065723-exon-scaffold_443-1575043694:292937..293189Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1575043694:292361..292405TCONS_00065723-exon-scaffold_443-1575043694:292361..292405Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1575043694:291980..292221TCONS_00065723-exon-scaffold_443-1575043694:291980..292221Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1575043694:291476..291563TCONS_00065723-exon-scaffold_443-1575043694:291476..291563Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1575043694:290150..290236TCONS_00065723-exon-scaffold_443-1575043694:290150..290236Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1575043694:289650..289715TCONS_00065723-exon-scaffold_443-1575043694:289650..289715Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1575043694:279565..279730TCONS_00065723-exon-scaffold_443-1575043694:279565..279730Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1575043694:278096..278974TCONS_00065723-exon-scaffold_443-1575043694:278096..278974Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:292937..293189TCONS_00065723-exon-scaffold_443-1510915933:292937..293189Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:292361..292405TCONS_00065723-exon-scaffold_443-1510915933:292361..292405Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:291980..292221TCONS_00065723-exon-scaffold_443-1510915933:291980..292221Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:291476..291563TCONS_00065723-exon-scaffold_443-1510915933:291476..291563Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:290150..290236TCONS_00065723-exon-scaffold_443-1510915933:290150..290236Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:289650..289715TCONS_00065723-exon-scaffold_443-1510915933:289650..289715Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:279565..279730TCONS_00065723-exon-scaffold_443-1510915933:279565..279730Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1510915933:278096..278974TCONS_00065723-exon-scaffold_443-1510915933:278096..278974Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:292937..293189TCONS_00065723-exon-scaffold_443-1491911889:292937..293189Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:292361..292405TCONS_00065723-exon-scaffold_443-1491911889:292361..292405Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:291980..292221TCONS_00065723-exon-scaffold_443-1491911889:291980..292221Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:291476..291563TCONS_00065723-exon-scaffold_443-1491911889:291476..291563Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:290150..290236TCONS_00065723-exon-scaffold_443-1491911889:290150..290236Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:289650..289715TCONS_00065723-exon-scaffold_443-1491911889:289650..289715Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:279565..279730TCONS_00065723-exon-scaffold_443-1491911889:279565..279730Clytia hemisphaericaexon
TCONS_00065723-exon-scaffold_443-1491911889:278096..278974TCONS_00065723-exon-scaffold_443-1491911889:278096..278974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:278096..293189 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.48009	7.96273	11.7755	8.989	8.95729	6.58868	7.13029	8.97999	7.19166	6.37739	6.83772	9.47445	7.09975	6.92551	6.27729	5.46326	7.42615	5.34579	5.94131	5.98906	6.17916	7.52528	2.30801	4.22098	10.5349	13.3639	7.34686	4.71042	6.57146	7.06547
Blast
[Close]
BLAST of TCONS_00065723 vs. Swiss-Prot (Human)
Match: CHMP6 (Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 9.914e-40
Identity = 92/244 (37.70%), Postives = 135/244 (55.33%), Query Frame = 2 
Query:  173 MGGLFSSKKKTENKQPNRITEQDKAVLSLKQQRDKLKQYQKKINLTLEKERQYAKQLLKDNKKXSVLLHHFCFRPLAFATHRK*KIPRSFARMCLTDXXXXXXXXXXXXXISSXQXXXXXXXXXXXXXXXXXHYQENLLKKTDGQLENIDRLISEVEFAQVELKVVEGLKQGNEALKKLHEIMSVEDVERIMDEAQEGIEYQNEIDELLSGGLTAEDEEDIMNELAEL--ERLELPSVPDTEIP 898
            MG LF  KK++      R+TEQDKA+L LKQQRDKL+QYQ          ++ A+QL ++                           R+ AR  L D  + + K   +KK                       YQE LL +T+ Q+ +++ ++  +EF Q+E+KV+EGL+ GNE L K+H++MS+E+VERI+DE QE +EYQ +IDELL+G  T EDE+ I+ EL+ +  E++ELP VP   +P
Sbjct:    1 MGNLFGRKKQS------RVTEQDKAILQLKQQRDKLRQYQ----------KRIAQQLERE---------------------------RALARQLLRDGRKERAKLLLKKK----------------------RYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQIELPEVPSEPLP 179
The following BLAST results are available for this feature:
BLAST of TCONS_00065723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHMP69.914e-4037.70Charged multivesicular body protein 6 OS=Homo sapi... [more]
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