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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066985 ID=TCONS_00066985|Name=TCONS_00066985|organism=Clytia hemisphaerica|type=transcript|length=2190bp
ATTCTAGctcaaacgaaaaaaaaaaaacacaaaactgAAAATGAAGACAT
CACTGCTCCTGTTATCACTGCTTTTCGTGGTCACAACAAGAAGCGCTTAT
GGGAGCTGGCACAAATACAACCACGGTGTTAAAAACTTGATCAGTGGAAT
GGCATCCATGCCATCGAGTACGACAAAATTGTTCGGTGTAGGGCTCAATG
GACATTTATGGGAAAGGATTTGGTCAGGCAATTCTTGGCATTGGGTAGAT
CATTGGGTGCCACCCGGCATGCTTTTGAGCGGCGATAAACTGGAATCAAC
TCCTTGTGTCATAAGGGATGGAAAGTTGTTTGTTGTTTCCAAAAAAGGTC
GATTGTGGGAGAGACATTGGGGTAATGGACAATGGAATTGGGTTTTTCAT
GGCAGACCATTGAATTTCAACAGACAACGCGTTGATCTGGATCCGACCAA
ATGTGTAGCAAGTAGAGGTAACAACATGGACCGAGTGTTTGCACGTGGTA
CCGATGGAGAGATATACCAGTTAAGATGGGTCCCTGGACTTTTTGGTGGC
TGGCGTTGGAGAGCTCATTTCAGGCCTAATGGTGCTGGAATCAGGATCGT
GAGTGGAGGATTCGATGTCGGCATGACCGGTACACATCTCTACGCCATCG
CCAACAATGGTCAACTCTATCGTTTCCGTTTGGGCCAAAACAACGCACAA
TTTTTGTGGGAAAATTCATTTGGTAGACCATCCTTCACCAATCTTCGAAG
TCTTTCCGTTAGCACCAGAAATGGCGTGACCAGAGTCTTAGTGGTGTCTG
TCAGGAATCAAGTCCATACTTGGAGTGGTAACCCATTTTCCTTTTCTGTA
GGCTCTCGCCCGAACGGTGTCCACTCATTTGGGCCAGCCATTATCCTCTC
CAAGGAGTTCCAGCATACTTGTAGAGGAAACGCCGAAACGATGGTCATGG
TTAGGACACCGCACACAATATACTCCATGACCCTTCCAGGCTTCGCCTTT
ACACAAGTCGGTTCAAATCACCGCCCTTTTATAGATGAGGTGCCAGCCGT
TCTGCAAAACCCGAGATGCCCAAAAGTCTTCGTTGTCACCAACCATGGTG
AACTTgtagaattttttgtttaattaacattttcatacagtaaactctct
ctccctctctaattcgaatttctataattcgaatctgtctgtaattcgaa
ctaaaacttTGGTCCCCTTAGCTGCAAATTAGTTTAAAATGATCTATAAA
ATTGGAATCTTTGGTTCGGGGAAAAGTCATGGTCCCTTCAAGGTAGAATT
AGAGAGAGAGGCaacaatatttatttttgtaacCAATGGAAcgtatttta
ttttgagagctTTTTTTGTTTACACGCACAATAGCACAAGAAAGGAAAAA
CGTGTGTACGTCCAAAATTTCATTTCCGAAGTCCCTTTACTTTACTGATC
ATACCTTGGGAGATGGGACATCTTCAACTTCTTTGATGCTATGACATTGA
ACAANCCCATTTTCCTTTTCTGTAGGCTCTCGCCCGAACGGTGTCCACTC
ATTTGGGCCAGCCATTATCCTCTCCAAGGAGTTCCAGCATACTTGTAGAG
GAAACGCCGAAACGATGGTCATGGTTAGGACACCGCACACAATATACTCC
ATGACCCTTCCAGGCTTCGCCTTTACACAAGTCGGTTCAAATCACCGCCC
TTTTATAGATGAGGTGCCAGCCGTTCTGCAAAACCCGAGATGCCCAAAAG
TCTTCGTTGTCACCAACCATGGTGAACTTGTAGAGTTTTTTGTTTAATTA
ACATTTTCATACAGTAAACTCTCTccttctctctaattcgaatttctatA
ATTCGCATCtgtctgtaattcgaactaaaacttTGGTCCCCTCAGTTGCA
AATTAGTTTAAAATAATCTATAAAATTGGAATCTTCTAATTCGGGGAAAA
GTCACAGTCCCTTGAAGATAGAATTAGAGAGAGTAACAATATCTATTTTT
GTAACCAAGGGAAcgtattttattttgagagctTTTTTTGTTTACACGCA
CAATAGCACAAGAAAGGAAAAACGTGTGTACGTCCAAAATTTAATTTCCG
AAGTCCCTTTACTTTACTGATCATACCTTGGGAGATGGGACATCTTCAAC
TTCTTTGATGCTATGACATTGGACAATATGCCTGCAATAA Run BLAST on NCBI protein sequence of TCONS_00066985-protein >TCONS_00066985-protein ID=TCONS_00066985-protein|Name=TCONS_00066985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MKTSLLLLSLLFVVTTRSAYGSWHKYNHGVKNLISGMASMPSSTTKLFGV
GLNGHLWERIWSGNSWHWVDHWVPPGMLLSGDKLESTPCVIRDGKLFVVS
KKGRLWERHWGNGQWNWVFHGRPLNFNRQRVDLDPTKCVASRGNNMDRVF
ARGTDGEIYQLRWVPGLFGGWRWRAHFRPNGAGIRIVSGGFDVGMTGTHL
YAIANNGQLYRFRLGQNNAQFLWENSFGRPSFTNLRSLSVSTRNGVTRVL
VVSVRNQVHTWSGNPFSFSVGSRPNGVHSFGPAIILSKEFQHTCRGNAET
MVMVRTPHTIYSMTLPGFAFTQVGSNHRPFIDEVPAVLQNPRCPKVFVVT
NHGELVEFFV Run BLAST on NCBI transcript from alignment at scaffold_462:514493..518892- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066985 ID=TCONS_00066985|Name=TCONS_00066985|organism=Clytia hemisphaerica|type=transcript|length=4400bp|location=Sequence derived from alignment at scaffold_462:514493..518892- (Clytia hemisphaerica)
ATTCTAGCTCAAACGAAAAAAAAAAAACACAAAACTGAAAATGAAGACAT
CACTGCTCCTGTTATCACTGCTTTTCGTGGTCACAACAAGAAGCGCTTAT
GGGAGCTGGCACAAATACAACCACGGTGTTAAAAACTTGATCAGTGGAAT
GGCATCCATGCCATCGAGTACGACAAAATTGTTCGGTGTAGGGCTCAATG
GACATTTATGGGAAAGGATTTGGTCAGGCAATTCTTGGCATTGGGTAGAT
CATTGGGTGCCACCCGGCATGCTTTTGAGCGGCGATAAACTGGAATCAAC
TCCTTGTGTCATAAGGGATGGAAAGTTGTTTGTTGTTTCCAAAAAAGGTA
CAAATCAATTCACACATATACTTTTCCTTCAATAACTCCTTTAAATATTA
TGACTATTGAATTCAAGATAATTTTTCGGGTATATAATAATATCATGTAT
TTCCAAGGTCCACAGTTAACTGGGTCTGAAAACCGTAGATTTTTTTTCAA
GATGATTCAGCTCTTCGGTCCGTGTCCACTATATTAAAACGATCTACAGC
TCAGTTAATTGCAAGTGTAATGTACGCTTCACAAACTTTTGTTTGCCACG
TGTTGTAACCTAACTGTTTAGATAACTATATTTCTGATCAATTTGATTGA
CAGGTCGATTGTGGGAGAGACATTGGGGTAATGGACAATGGAATTGGGTT
TTTCATGGCAGACCATTGAATTTCAACAGACAACGCGTTGATCTGGATCC
GACCAAATGTGTAGCAAGTAGAGGTAAGAAGGCTGAAATTTGACGATTGA
TAGACTTTTATAGCGCTTCTTACTGCCTTGTACCTTGTAGATGATATTCA
CGACGTAATGTTTTCTACAGGAACAGTCCGGTTTTTGCAAGTAGTGACAA
ATTTTAAACAATTTTCACTCTAGCTTACATTTCTTAAGTATAAGTAAATC
TGCGACCGCAGTCGGAGGCAACCCGAAGGCTCCTCTTTCGATAGCTATCT
ACCCGAAGGTAGGGGAGGGCGCCACTCTTTCTCCCTGGATTGCTCCACTT
ACCCTTGATCCTTCTCTTAATTGCTGAGAATCAAGCAGAATCAACCTTGC
GAATCGTAGCCGGATGCTCTACCACTGCACTACGATCGCTACATAAAGAC
TCTTTAGAACTATCACTACCCGCTTAATTCTAATATCAATTTTGTTGATT
AAAGCTTACTCACAGATAAAAACCTACATACAACACCCTCTAAGAAGCTC
AAACAAAGTCGAAAATTTTACTACTGTGGCGTCAGTTAAAAAATCCAGAG
GTTTGAGTAGTATTGGAAAACCACAAATTATAGATTTTCCATCGTCCTAA
GAATGTGCTTTGGATATCAATGTGAAAAATGAACATTTATCTAAATTATT
CTACCGGTATACGCCAGAAACAATTTATATAATAATTGTATGACCTATTT
TATTTAGCTTGCGCGTCCTTATGTTTCGGCGGGTTATTATTCTGTAATAC
CCCGCTCAATTTGTAATACCCCTGTGAAAAGTTTGTATTATCCCCCCTCA
GTTAAGTTCCTTGCTGCTATGCTCCGGGTGTGTCGCGTAAAGAAAAAAGA
AGACGTTGCAGTTGGGCGGCGAGACAACCGAATGTTTTGATTTTCAATTC
GAATGTTGTTGGTGTTGATATATGAGCAGGAAATGAAAATGAGAGAAAGA
ACTTCGTCGAAAGTTCGAGGAAACTTTTTACAAAATTTATAGTTTTTGTT
TTTACTTTAGTGTAGTTTACATAAGTTACGGATGCTATAACGGCTATAAC
ATCAGTTGTAAGGCTTTGAACTGATTTTACTATTTTGTTTATTTCACTTG
GTTCTCATTTTACATATATACAGCTTCTTGCTTGGTTTTCTCCAGGTAGG
TACATTATGAAGGTGGAGTCTTAGTTTGTAGATCAAGAACTTCGAGGGGA
TAAACTCGTTGCACGGTCGTCTCAAAAATGCGGAACTCTAGCATTGCAAA
CAAGCTAGAGGAGTAAAAAAACATAGAAAAAAATGTGACTCGTAAAACGT
ATCGAGAGGACTTGAGATGCACTCTCCATGTTACTTTGTTCTTAGCTAAA
TAAAATCGGTCATACAATTAACCAGGAATGACATGATTTTTCGTGAAATT
TGGGATTAATACCCCTCGTATCATTTTGAAATACATTGAAATAGCCCTCA
CTTCGTTCGTGCTATTTCAAAGTATTTCAAAATGAAACTCGGGGTATTAA
TCCCAAATTTCCCTCAAAGTCATATCATTACTAATACTAATTTACTCACG
TAGGTAACAACATGGACCGAGTGTTTGCACGTGGTACCGATGGAGAGATA
TACCAGTTAAGATGGGTCCCTGGACTTTTTGGTGGCTGGCGTTGGAGAGC
TCATTTCAGGCCTAATGGTGCTGGAATCAGGGTAAGCTGCTAATTTGTTT
TTTCACATTTGGAATTTTTCTGTCGATTTGGTAAATAATTTAAGGGTATT
CGGAGCGAAACTTCGGCCACTAATCGATGTTCTGAGAGTTGTAGTTCATA
TCTATTTGAACTGTGAGAGTTCAATTTAAAGTGTGTAACTTGTATTCTAG
TCTAGCAAGCTAGACGACTAATTTATACATATATAGTAGAAATAAAGCAA
AAAGTAATGAATGGAACAATTTTAGTCTTTTAGTTTATACAAACTAAATC
CCGTATTATTATTAGTATTGGTATTATTAGTATCACACGCATTATAAACG
ACTCCAGTCTACTTGTATTCAGAAATATAACAACAATTTTATATTCATTA
TCCAGATCGTGAGTGGAGGATTCGATGTCGGCATGACCGGTACACATCTC
TACGCCATCGCCAACAATGGTCAACTCTATCGTTTCCGTTTGGGCCAAAA
CAACGCACAATTTTTGTGGGAAAATTCATTTGGTAGACCATCCTTCACCA
ATCTTCGAAGTCTTTCCGTTAGCACCAGAAATGGCGTGACCAGAGTCTTA
GTGGTGTCTGTCAGGAATCAAGTCCATACTTGGAGTGGTAACCCATTTTC
CTTTTCTGTAGGCTCTCGCCCGAACGGTGTCCACTCATTTGGGCCAGCCA
TTATCCTCTCCAAGGAGTTCCAGCATACTTGTAGAGGAAACGCCGAAACG
ATGGTCATGGTTAGGACACCGCACACAATATACTCCATGACCCTTCCAGG
CTTCGCCTTTACACAAGTCGGTTCAAATCACCGCCCTTTTATAGATGAGG
TGCCAGCCGTTCTGCAAAACCCGAGATGCCCAAAAGTCTTCGTTGTCACC
AACCATGGTGAACTTGTAGAATTTTTTGTTTAATTAACATTTTCATACAG
TAAACTCTCTCTCCCTCTCTAATTCGAATTTCTATAATTCGAATCTGTCT
GTAATTCGAACTAAAACTTTGGTCCCCTTAGCTGCAAATTAGTTTAAAAT
GATCTATAAAATTGGAATCTTTGGTTCGGGGAAAAGTCATGGTCCCTTCA
AGGTAGAATTAGAGAGAGAGGCAACAATATTTATTTTTGTAACCAATGGA
ACGTATTTTATTTTGAGAGCTTTTTTTGTTTACACGCACAATAGCACAAG
AAAGGAAAAACGTGTGTACGTCCAAAATTTCATTTCCGAAGTCCCTTTAC
TTTACTGATCATACCTTGGGAGATGGGACATCTTCAACTTCTTTGATGCT
ATGACATTGAACAANCCCATTTTCCTTTTCTGTAGGCTCTCGCCCGAACG
GTGTCCACTCATTTGGGCCAGCCATTATCCTCTCCAAGGAGTTCCAGCAT
ACTTGTAGAGGAAACGCCGAAACGATGGTCATGGTTAGGACACCGCACAC
AATATACTCCATGACCCTTCCAGGCTTCGCCTTTACACAAGTCGGTTCAA
ATCACCGCCCTTTTATAGATGAGGTGCCAGCCGTTCTGCAAAACCCGAGA
TGCCCAAAAGTCTTCGTTGTCACCAACCATGGTGAACTTGTAGAGTTTTT
TGTTTAATTAACATTTTCATACAGTAAACTCTCTCCTTCTCTCTAATTCG
AATTTCTATAATTCGCATCTGTCTGTAATTCGAACTAAAACTTTGGTCCC
CTCAGTTGCAAATTAGTTTAAAATAATCTATAAAATTGGAATCTTCTAAT
TCGGGGAAAAGTCACAGTCCCTTGAAGATAGAATTAGAGAGAGTAACAAT
ATCTATTTTTGTAACCAAGGGAACGTATTTTATTTTGAGAGCTTTTTTTG
TTTACACGCACAATAGCACAAGAAAGGAAAAACGTGTGTACGTCCAAAAT
TTAATTTCCGAAGTCCCTTTACTTTACTGATCATACCTTGGGAGATGGGA
CATCTTCAACTTCTTTGATGCTATGACATTGGACAATATGCCTGCAATAA
Coding sequence (CDS) from alignment at scaffold_462:514493..518892- >TCONS_00066985 ID=TCONS_00066985|Name=TCONS_00066985|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_462:514493..518892- (Clytia hemisphaerica)
ATGAAGACATCACTGCTCCTGTTATCACTGCTTTTCGTGGTCACAACAAG
AAGCGCTTATGGGAGCTGGCACAAATACAACCACGGTGTTAAAAACTTGA
TCAGTGGAATGGCATCCATGCCATCGAGTACGACAAAATTGTTCGGTGTA
GGGCTCAATGGACATTTATGGGAAAGGATTTGGTCAGGCAATTCTTGGCA
TTGGGTAGATCATTGGGTGCCACCCGGCATGCTTTTGAGCGGCGATAAAC
TGGAATCAACTCCTTGTGTCATAAGGGATGGAAAGTTGTTTGTTGTTTCC
AAAAAAGGTCGATTGTGGGAGAGACATTGGGGTAATGGACAATGGAATTG
GGTTTTTCATGGCAGACCATTGAATTTCAACAGACAACGCGTTGATCTGG
ATCCGACCAAATGTGTAGCAAGTAGAGGTAACAACATGGACCGAGTGTTT
GCACGTGGTACCGATGGAGAGATATACCAGTTAAGATGGGTCCCTGGACT
TTTTGGTGGCTGGCGTTGGAGAGCTCATTTCAGGCCTAATGGTGCTGGAA
TCAGGATCGTGAGTGGAGGATTCGATGTCGGCATGACCGGTACACATCTC
TACGCCATCGCCAACAATGGTCAACTCTATCGTTTCCGTTTGGGCCAAAA
CAACGCACAATTTTTGTGGGAAAATTCATTTGGTAGACCATCCTTCACCA
ATCTTCGAAGTCTTTCCGTTAGCACCAGAAATGGCGTGACCAGAGTCTTA
GTGGTGTCTGTCAGGAATCAAGTCCATACTTGGAGTGGTAACCCATTTTC
CTTTTCTGTAGGCTCTCGCCCGAACGGTGTCCACTCATTTGGGCCAGCCA
TTATCCTCTCCAAGGAGTTCCAGCATACTTGTAGAGGAAACGCCGAAACG
ATGGTCATGGTTAGGACACCGCACACAATATACTCCATGACCCTTCCAGG
CTTCGCCTTTACACAAGTCGGTTCAAATCACCGCCCTTTTATAGATGAGG
TGCCAGCCGTTCTGCAAAACCCGAGATGCCCAAAAGTCTTCGTTGTCACC
AACCATGGTGAACTTGTAGAATTTTTTGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00066985-exon-scaffold_462-1575043694:518546..518892 | TCONS_00066985-exon-scaffold_462-1575043694:518546..518892 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1575043694:518120..518239 | TCONS_00066985-exon-scaffold_462-1575043694:518120..518239 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1575043694:516462..516589 | TCONS_00066985-exon-scaffold_462-1575043694:516462..516589 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1575043694:514493..516087 | TCONS_00066985-exon-scaffold_462-1575043694:514493..516087 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1510915933:518546..518892 | TCONS_00066985-exon-scaffold_462-1510915933:518546..518892 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1510915933:518120..518239 | TCONS_00066985-exon-scaffold_462-1510915933:518120..518239 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1510915933:516462..516589 | TCONS_00066985-exon-scaffold_462-1510915933:516462..516589 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1510915933:514493..516087 | TCONS_00066985-exon-scaffold_462-1510915933:514493..516087 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1491911889:518546..518892 | TCONS_00066985-exon-scaffold_462-1491911889:518546..518892 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1491911889:518120..518239 | TCONS_00066985-exon-scaffold_462-1491911889:518120..518239 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1491911889:516462..516589 | TCONS_00066985-exon-scaffold_462-1491911889:516462..516589 | Clytia hemisphaerica | exon |
| TCONS_00066985-exon-scaffold_462-1491911889:514493..516087 | TCONS_00066985-exon-scaffold_462-1491911889:514493..516087 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:514493..518892 - |
Blast
The following BLAST results are available for this feature:
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