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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068014 ID=TCONS_00068014|Name=TCONS_00068014|organism=Clytia hemisphaerica|type=transcript|length=5012bpRun BLAST on NCBI protein sequence of TCONS_00068014-protein >TCONS_00068014-protein ID=TCONS_00068014-protein|Name=TCONS_00068014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=934bp MNNIVGYIMILWMLAYIHQAEAMNIHQFYTDVHLPRINISWSAMGRNIEYRun BLAST on NCBI transcript from alignment at scaffold_478:476400..500295+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068014 ID=TCONS_00068014|Name=TCONS_00068014|organism=Clytia hemisphaerica|type=transcript|length=23896bp|location=Sequence derived from alignment at scaffold_478:476400..500295+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_478:476400..500295+ >TCONS_00068014 ID=TCONS_00068014|Name=TCONS_00068014|organism=Clytia hemisphaerica|type=CDS|length=2805bp|location=Sequence derived from alignment at scaffold_478:476400..500295+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068014 vs. Swiss-Prot (Human)
Match: PTPRD (Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2) HSP 1 Score: 329.717 bits (844), Expect = 3.145e-91 Identity = 237/728 (32.55%), Postives = 366/728 (50.27%), Query Frame = 1
Query: 811 YVIGNGKINGGVLNAKLDGYYSYAFFQRTFVEGR------SAPISHPWTPI-LEPQGGPKRATEDDEXXXXXXXXXXXXXAFIIILVFCCYLKYSRNYAPKPVKKKR------------TDPVQ--RLSID-------PAIPVTECDFYDHVAQMKFHNFKGFYEEYTNMEVPFKPTEEFRNPD-NNSKNRFLNVPCYDHSRVPIEPRND--KSTYIHANFVPGFDTDKDYILTQAPLPETIKDFWSMVFDHNVETIVMIGQEFEKGHNVCAPYFPSK--EGHSVTALYGKVTLEHEHRTADYIIRTLIFTPLGSHNGPRRIKHFQFLSWPAVRITPCCPIVFLQFMRAVNKSITKSKVVHPLVIHGTTGTGRAGIYACIDTQLRRIRKQSDVNVYEAVLDVRSTRWDGVKTLDEYIFIHDTALEWILKKKIRDIDVEYLPHYIENINKSAPDELFTT---EYNFLAATVVSATQKMDVANQPCNKSKNRYDTVKPFDNNRVKLTKLINTEGSDYINASYIDTYTKKKSFISTQAPLVGTVSDFWRMIYENESWVIVMLGQEIEKGQLKADRFWPEEGYVMALGHLSVKYVSFQKDGLKD-----VVIRQVEIQNNKTDEKKLVQLYQYLTWPXXXXXXXXXXXXLVQLVHQSQMWKEKL-KAKTITIVSSSGIGRPGVFIALRYLQEESEIEGHVNIFQAVQKLRQQRSALIQTREQYILIYTSAME 2868
+ +G+ K GG N +L Y FF +E ++P S P + L+PQ D+E +I + + + FII +V L Y R A +K TDPV+ RL+ P IP+ E DH+ ++K ++ F +EY +++ + T E N + N KNR+ NV YDHSRV + S Y++AN++ G+ YI TQ LPET DFW M+++ T+VM+ + E+ C Y+PS+ E H + +VTL A Y +RT GS R ++ FQF +WP + P P FL F+R V P+V+H + G GR G + ID L RI+ + V++Y V +R+ R V+T D+YIFIHD LE + ++ L YI+ + + E T E+ LA++ + T + AN PCNK KNR + P+++ RV L + EGSDYINAS+ID Y ++K++I+TQ PL T DFWRM++E+ S ++VML + E G+ K ++WP E S +Y F D + + ++R+ ++ + + + + V+ +Q+ WP E +S + + Q KE+ + I++ S+G+GR GVFI L + E EG V+IFQ V+ LR QR A++QT +QY Y +A+E
Sbjct: 1203 FTLGDDKHYGGFTNKQLQSGQEYVFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQ-----PITDEEEGLIWVVGPVLAVVFIICIVIAILL-YKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILE--LADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLV----QVTLLDTVELATYCVRTFALYKNGSSEK-REVRQFQFTAWPDHGV-PEHPTPFLAFLRRVK--TCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNT-EVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSK-AHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAE--------RSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWP--EQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAALE 1902 HSP 2 Score: 133.265 bits (334), Expect = 7.101e-31 Identity = 87/271 (32.10%), Postives = 141/271 (52.03%), Query Frame = 1
Query: 1219 EEYTNMEVPFKP-------TEEFRN---PDNNSKNRFLNVPCYDHSRVPIEPRN--DKSTYIHANFVPGFDTDKDYILTQAPLPETIKDFWSMVFDHNVETIVMIGQEFEKGHNVCAPYFPSKEGHSVTALYGKVTLEHEHRTADYIIRTLIFTPLGSHNG-PRRIKHFQFLSWPAVRITPCCPIVFLQFMRAVNKSITKSKVVHPLVIHGTTGTGRAGIYACIDTQLRRIRKQSDVNVYEAVLDVRSTRWDGVKTLDEYIFIHDTALEWI 1992
E T ME+ FK T F + P N KNR +N+ Y+ +RV ++P + S YI+A+F+ G+ K YI TQ PL ET +DFW M+++HN +VM+ + E G C Y+P++ S Y V E+ YI+R T + +G R ++ FQF WP + P F+ F+ V+K+ + P+ +H + G GR G++ + L R+R + V++++ V +R+ R V+T D+Y F + ALE++
Sbjct: 1639 ENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAE--RSARYQYFVVDPMAEYNMPQYILREFKVT--DARDGQSRTVRQFQFTDWPEQGV-PKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAALEYL 1904 The following BLAST results are available for this feature:
BLAST of TCONS_00068014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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