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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068250 ID=TCONS_00068250|Name=TCONS_00068250|organism=Clytia hemisphaerica|type=transcript|length=388bp
GCACATTCAGCTTTACAAAACGATCTGGTGAAATTTGATGACACAACAAA
TTGTTTCACAGTCGGTGGTTACTTGCAAGCGGCCCCTTCTGACATCTTTT
CCGTCCAACTCGTTGCTAACCGAACTGGTGATCTTTGGAGTGAACTTTAT
ATTAACCCCACTTCAGAGACCTTCCACGAAGCATCACCGACCATTTATTG
GGCAAGTGAGGGTTTTTACCACGTCAATGTCGTAAAGAAAATCATCACTC
GTCTTGGTCTTCCGTACACTGAATGCATCAAAGGCAGCGGTACTTACGCG
CAAAACAAATTCACAGGAATCTACACTGTCACAAAATGTAAGAAAGGATG
TTTCTGGGAAGCTGTGTTTGAAAAATGTGGAGCTATTC Run BLAST on NCBI protein sequence of TCONS_00068250-protein >TCONS_00068250-protein ID=TCONS_00068250-protein|Name=TCONS_00068250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
AHSALQNDLVKFDDTTNCFTVGGYLQAAPSDIFSVQLVANRTGDLWSELY
INPTSETFHEASPTIYWASEGFYHVNVVKKIITRLGLPYTECIKGSGTYA
QNKFTGIYTVTKCKKGCFWEAVFEKCGAI Run BLAST on NCBI transcript from alignment at scaffold_482:67717..72346+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068250 ID=TCONS_00068250|Name=TCONS_00068250|organism=Clytia hemisphaerica|type=transcript|length=4630bp|location=Sequence derived from alignment at scaffold_482:67717..72346+ (Clytia hemisphaerica)
GCACATTCAGCTTTACAAAACGATCTGGTGAAATTTGATGACACAACAAA
TTGTTTCACAGTCGGTGGTTACTTGCAAGCGGCCCCTTCTGACATCTTTT
CCGTCCAACTCGTTGCTAACCGAACTGGTGATCTTTGGAGTGAACTTTAT
ATTAACCCCACTTCAGAGACCTTCCACGAAGCATCACCGACCATTTATTG
GGCAAGTGAGGGTTTTTACCACGTCAATGTCGTAAAGAAAATCATCACTC
GTCTTGGTCTTCCGTACACTGAATGCATCAAAGGCAGCGGTACTTACGCG
CAAAACAAATTCACAGGAATCTACACTGTCACAAAATGTAAGAAAGGATG
TTTCTGGGAAGCTGTGTTCGAAAAATGTGGCGCCATTCCGCCAATGTATA
AGAAACATATGCGAGAACCATATCGTTTTGACAACACATCTTTCATCAGT
GATGCGGATGGGCAGGCTTGTTTAAGAGAGGTCGAAAACGATGACAGTGT
CACAGAAAAATGTAATGGACAGTGCAAATTACAACCGTGTTACGAAGAAG
ACATTAAAATGTCGTTAGATTTTCATCGGTCACCAAATCCAAACTTTCTC
GAATTTGCTTTCACATTCAAATCGTTCCTCGTTGAAGTCGTCGAAGAAGC
TCCAGCATACACATGGCAAGATTTGTTCGCCAATTTCGGTGGCTGTGTTG
GCTTGATGACAGGAGCTTCCATTTTGTCTTTTGtggaacttttcattttc
ttgggATTAATTTTAATGGATAAATTTGACCTTTATTCAAAAGTATCGAC
CAAGGTTGTGCCAACTTCAGATTGAACACTCCGGTTACTTATTAAAGACT
TTGTCTTTGTAAATATGGAATCCaagcttattttttttaactttttcgta
ttgaaattttgtaagatGTAAATAATGTAAATATTGTAAAATATATGAAG
ACGTTTTataatgcaaaaaaaaagaagtttatttTCTCAGCGTTACCTCG
ATAAAAATAGTCGAGGTTCTTACTTTCGAGAGGTTTAGAATTCAGCTCTG
GTCATTGTTTTGTTTAATATAAAGTATTTACCCCTTGATTCGGTGGGTAA
TGACGAGGTGCAATGCAAAAGGTTGATGTTCTTAACCATTTAAGCTGTCC
GTCGCTTTTTTTAGGTTTGATTTATTTGCCGAGGTAAAAAAtaaaggttc
gacctatttgccgaTGTCGGCAAACGCCAAGGACTATAATcttgagttga
acattgtagaatagttatttttcaacatagaaaagtttgtaactattcat
ttttttcatttcaaaccaccTAATAcgaaaatcttgtaaaaaatgataaa
tttcggGCAAATAGGCCGAAATTTCGCATGTCAGCAAATCCCGACAATGg
caaggaaatcaaaaatgctcatgtcggcatatgccgacacataccctgag
tatcagaagTTAAGTTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNatgaagagcaaatattaccttattaatgtctagcagactgta
tcagtatgcagtttactatttacgaattccccagaaacctccaagtgtaa
tcgaagtgagtttctatcgaaagaaatcttttacatgatccccaaatgta
taatagtaattactaaactataatttaatcgaaataatagacagacttta
tgttatgattctctatcactgactctttttaaaaagcattgatgatattt
tttgttgtgttttcaacgacgggaataaaaatatcaactttgaacttcat
ccaagatcttggatggtcgtcatggttacttttgtcttcgttgattgcgc
gatggatagaatctcgattcgtcggcacagcgtcaatatatgattttgac
ctgtgcttttcacggtagccgACACAGGCACAGAAAGggttaaaagtttt
tgattgaTCTTTCCAATGAGAAAGGGGATCCCCACCTGGTCTGTGATTTA
TCACTATCAGTAGGCATGATTCGGAAACAGGCCTTTTTTCACTTAAAGCG
CCGACGGATTGGTTTATCAAGATCTTAAGTGTGCGATAAGAATGAAATAT
TGTCTCGAGTAGAAAAAAACACATCAAAAACATACAAACAACTTACACGC
GTTGTTTATAAGAACCACTGAATAAATGTTGAGGACTTGAATGTTCTTTG
AGTTGTTCTTatatatgcttatttttttctttcaaaaaatttttctattt
tcttagcTACGTCTGAAATATGAGGCTGAGGTACTGCTTAATCTTTTCTC
CAGTTTCGAGTTCtaatgaaatgaaaacatttgattttGGGGAAGAGTTT
GATTTATTGACTGCTAATTAGATCACGAAATTTTAGTCACCGTTGGCAAG
TTTTCaggacaaatattttttttcgtgaGAGCTAAATTTCAGAGCCGCTT
TGCACCATTTTCGATTATGATAAACGTGATGCAACCTTTCGTTAGGGCTG
TCAATCATAAAAAGTGAGCAAAGGGCCTGGGCTCGACTTTGTTAAAATTc
gtgaaaaatctcaaaagtttCTTTCTCCTTTAATTAATTTCAATAGAAAG
TTCTGTTACCAAGTTTTCAATACAAATGTGCTTCATGGGTAACAGGTGGT
TTAGACCTCATATCAAACCACCTCCGTTACCACATGTCAATTTCGTGTCC
TTGTTTTGTTGATGTTTGTTTACACGAAGTCGTCATATTCAAAAAATTGT
GGTCGGGTATTATTGGAAGTGCAGTTTCGCTGAAAATTTGCTAATAATCG
agaatgaaatttattttgaatccTTAAATGAATTTAATGTTCAAGCGTTT
TTCTTTAGGGCTTCAATAAATGTTTTTAAGATAAATTTGCGTAAATTCAC
TAAAAACTAAGGATTCCAGCCGAGTATAACCAAAAAAGATGGATTTGCCT
GGATTCACTGGAAATGAGGAGAAAAGGCGAGAATCAACAAATAAAATAGC
GTGAttctttttaagaatattttaagcaagTTACTCAATACAAAGTAAAT
CAAGTTGATAATTTATTCATTCGTTGACAAGTTCTTAAACAGGTGGATTG
AATTGAAATTTCGCATTCAATCAGAAAAACGCAGAATAAATACGATTCGA
TTTTTTGCCGCCATTTTCAAACATGAATCGATGTCAATATATCAATGTGG
TAACTGTTTGCTACTTTTTGAATCATGAATATGAATTTATTTATAGTTGA
ATATTTTGCTGCATAATTGAGAAGTGAGGATTGACCAAACATTCTTGAAT
TATTAATAGATTAGTAAACTTTATATTATCAAGTATATCTATAACTTTAA
TTTATCATTGGATTTATTTTAAAGGAGTAAATTTATTCGTGAGATCCAAT
CCAGAAGAGTTTATGTTGAAAAGATCTGAGTGAAAATGTCGGATACGGTG
CAgttattgaaaaagattgaacTTTTGACGAAACAGGTTGCCAACATCGA
TCATGAAGTCAAGAAAAGTAAAAGTGATATTCGGAAACTTTCCTCCGGAA
AATCACACGAAGATTTAGAATCCCTGGACAAAACGGAAAGTTTGGAGAAG
AAGACGCGAGATGTGGACTTGGAACAAAACAATGTACGCAAACCCAAAAC
ATCCGCAGCTCTAAGCAATTTCGATGTGATGGAAGAGAAAATTGCCGACG
AGCGTCAAAGCTATGCTGAAGGTCTCACTATTCATGGGTTAAGTCGCATC
GCTACCGGTCGACCGTTCAGCAAAGTCATATGGACCTTACTAGTGATGGC
CTCCTTACTCACAGCTCTCCTCATTTCTAAAGAACATTTTGAAGCTTATT
TAGGTGACCACAGCGTCACACATACCGCCATAACTGCTGAAAATGAAATT
GCAGTGCCCTCAATCACAATCTGCAATTACGATGGGATTAACAGAGAACG
CCGACATTTTAGTGGAACTCCCCCTTTTTACACGAGACCTCAACTTGTGA
GCGTCGACATGCGTGAGTGTGGTAACAACTTGACAAAGTGTGGATACGAT
GGAAGAACTATAGTCGAGGTTTTATTCTACTCCAGTGATTACGTCAAATC
AAAGAAGTTGAACCATCTTGTGAAATTTGACGACACAACAAATTGTTTCA
CGGTCAGTGGTTTCACTCAGACTTTTCCCTCTGATATCTTTTCCGTCCAA
CTCGTTGCTAACCGAACAGGTGACCTTTGGAGCGAGCTCTACGTAAACCC
TGACTATGAGACCTTCCACGAAGCCTCACCGACCATCTATTGGGCAAGTG
AAGGATTTTACCACGTCAATGTCGTGAAGAAAAAAGTTACAAGACTGGGG
CTTCCTTATACTGAATGCATCAAAGGCAGCGGTACTTACACACAAAACAA
ATTCACCGGAGTCTACACAGTCACAAAATGTAAGAAAGGTTGCTTCTGGG
AGGCTGTGTTTGAAAAATGTGGAGCTATTC Coding sequence (CDS) from alignment at scaffold_482:67717..72346+ >TCONS_00068250 ID=TCONS_00068250|Name=TCONS_00068250|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_482:67717..72346+ (Clytia hemisphaerica)
GCACATTCAGCTTTACAAAACGATCTGGTGAAATTTGATGACACAACAAA
TTGTTTCACAGTCGGTGGTTACTTGCAAGCGGCCCCTTCTGACATCTTTT
CCGTCCAACTCGTTGCTAACCGAACTGGTGATCTTTGGAGTGAACTTTAT
ATTAACCCCACTTCAGAGACCTTCCACGAAGCATCACCGACCATTTATTG
GGCAAGTGAGGGTTTTTACCACGTCAATGTCGTAAAGAAAATCATCACTC
GTCTTGGTCTTCCGTACACTGAATGCATCAAAGGCAGCGGTACTTACGCG
CAAAACAAATTCACAGGAATCTACACTGTCACAAAATGTAAGAAAGGATG
TTTCTGGGAAGCTGTGTTTGAAAAATGTGGAGCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068250-exon-scaffold_482-1491911889:67717..68076 | TCONS_00068250-exon-scaffold_482-1491911889:67717..68076 | Clytia hemisphaerica | exon |
| TCONS_00068250-exon-scaffold_482-1510915933:67717..68076 | TCONS_00068250-exon-scaffold_482-1510915933:67717..68076 | Clytia hemisphaerica | exon |
| TCONS_00068250-exon-scaffold_482-1575043694:67717..68076 | TCONS_00068250-exon-scaffold_482-1575043694:67717..68076 | Clytia hemisphaerica | exon |
| TCONS_00068250-exon-scaffold_482-1491911889:72319..72346 | TCONS_00068250-exon-scaffold_482-1491911889:72319..72346 | Clytia hemisphaerica | exon |
| TCONS_00068250-exon-scaffold_482-1510915933:72319..72346 | TCONS_00068250-exon-scaffold_482-1510915933:72319..72346 | Clytia hemisphaerica | exon |
| TCONS_00068250-exon-scaffold_482-1575043694:72319..72346 | TCONS_00068250-exon-scaffold_482-1575043694:72319..72346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:67717..72346 + |
Blast
The following BLAST results are available for this feature:
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