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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068378 ID=TCONS_00068378|Name=TCONS_00068378|organism=Clytia hemisphaerica|type=transcript|length=3252bpRun BLAST on NCBI protein sequence of TCONS_00068378-protein >TCONS_00068378-protein ID=TCONS_00068378-protein|Name=TCONS_00068378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp MVEEKTETPEKSFVEQLKENDIYTEFIDDTFDAKEYANTVIESHIIGDALRun BLAST on NCBI transcript from alignment at scaffold_483:193441..258777- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068378 ID=TCONS_00068378|Name=TCONS_00068378|organism=Clytia hemisphaerica|type=transcript|length=65337bp|location=Sequence derived from alignment at scaffold_483:193441..258777- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_483:193441..258777- >TCONS_00068378 ID=TCONS_00068378|Name=TCONS_00068378|organism=Clytia hemisphaerica|type=CDS|length=2445bp|location=Sequence derived from alignment at scaffold_483:193441..258777- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068378 vs. Swiss-Prot (Human)
Match: COG5 (Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=3) HSP 1 Score: 685.641 bits (1768), Expect = 0.000e+0 Identity = 353/809 (43.63%), Postives = 516/809 (63.78%), Query Frame = 1
Query: 94 VEQLKENDIYTEFIDDTFDAKEYANTVIESHIIGDALAKLSTGIELLNKELQTQVADHHEDLLSQATGIETLEGVLQSIHTRCQSLVKSVQRVRSQIVEPYNRISSRTKQLRRLQTSCDYLRRIIRVILVSKRLQIQLNGGSREITKAAQSLNELEFVLDGVDLSGIQIVEKDLAQIKKARVEVNKQAKEMLKNGLNSQNQTVIGTALQVFHNLGSLYNEITNIMEMFTRTMEKYVDESLDITKLMTKTGINAGGISGPGRAAMPLAGST--WHNGLWDNLELLMNNMFSLCQKVFLMEKVLVKKKDPSTHVSYIETFCEDNCSVLFKDFWNSICSALRSSFDKETQDSTHLKQAFEGEYPKLLRLFNDFWSQVIGLVDPKXXXXXXXXXXXXXXXRDVKVGFHGNETSAL-------------TSLKSCMQPFETAYLSRSLSRLFDSINLVFPTESTAVPSKDEVGAIVKTISSELNVASVDEHLMILVAKNVSKTVQLYSTKCEQLIVTTSEAGQLGGGLTNAQIRNVSVVNSLGYLRTGITEILLELDYPPQEAIVTLDKAIVRINDFMDVSLSLLLSSIMRTLETKMLKMSNENFAISAQSFHETQEVQSCSNYVTDIQNFISSIQSDYLSLYTCTDFLLERLKVLASRVLQLFVRYACLTRQLSEGGKLKMAADMTQLEFAVTPLCKRFEDLGHEYKQYRAFRPLLFQTLNDIPSNPNLGESLTFSTVLHFLFSQAPSQFISPHTFSGWTVTQYSDWLDEHNDESERINLLRKTIDSYATKMEVDGQADLSPVYTIMKKLLRQ 2475
V +L ++ Y++F+++ FD K Y + I +I + LAKL+ GI L++EL QV HEDLL+QATGIE+LEGVLQ + TR +L +V R++++IVEPYN+I +RT QL RLQ +CD LRRIIR++ +SKRLQ QL GGSREITKAAQSLNEL+++ G+DLSGI+++E DL I +AR+EV QAK +L+ GL +QN T +GTALQVF+NLG+L + IT++++ + T+E+ ++ +LDI K++T+ +A GPGR+ MP G+T W N+E LM++++++C +V ++KVL KK+DP +H+ +IE +D +F FWNS+ AL S F T S LKQAFEGEYPKLLRL+ND W ++ +Q + Q D+ V E A +LK +QP+E AYLS+SLSRLFD INLVFP PS DE+ I+KTI+SELNVA+VD +L + V+KNV+KT+QLYS K EQL+ T +A Q+ G LT Q RNV+VVNSL L +T+ I+ M+ ++ LL+S+ +E ++ M E+F+ S S + CS Y+ ++Q FI+ + SDY + C DF+ + + +A R ++LF+R+A L R L EGGK+++AAD Q+E AV P C+R DLG Y+ R+FRPLLFQ + S+P LG+ + FS ++ FLF++AP++ SP + W+ T++S WLD+H E +R+ L+R +++Y + + +PVY IM +LL++
Sbjct: 56 VRELLQDGCYSDFLNEDFDVKTYTSQSIHQAVIAEQLAKLAQGISQLDRELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQGAVDRIKAKIVEPYNKIVARTAQLARLQVACDLLRRIIRILNLSKRLQGQLQGGSREITKAAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGLETQNPTQVGTALQVFYNLGTLKDTITSVVDGYCATLEENINSALDI-KVLTQPSQSAVR-GGPGRSTMPTPGNTAALRASFWTNMEKLMDHIYAVCGQVQHLQKVLAKKRDPVSHICFIEEIVKDGQPEIFYTFWNSVTQALSSQFHMATNSSMFLKQAFEGEYPKLLRLYNDLWKRL------QQYSQHIQGNFNASGTTDLYVDLQHMEDDAQDIFIPKKPDYDPEKALKDSLQPYEAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGIIKTIASELNVAAVDTNLTLAVSKNVAKTIQLYSVKSEQLLSTQGDASQVIGPLTEGQRRNVAVVNSLYKLHQSVTKA---------------------IHALMENAVQPLLTSVGDAIEAIIITMHQEDFSGSLSSSGKPDV--PCSLYMKELQGFIARVMSDYFKHFECLDFVFDNTEAIAQRAVELFIRHASLIRPLGEGGKMRLAADFAQMELAVGPFCRRVSDLGKSYRMLRSFRPLLFQASEHVASSPALGDVIPFSIIIQFLFTRAPAELKSPFQRAEWSHTRFSQWLDDHPSEKDRLLLIRGALEAYVQSVRSREGKEFAPVYPIMVQLLQK 833 The following BLAST results are available for this feature:
BLAST of TCONS_00068378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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