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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068381 ID=TCONS_00068381|Name=TCONS_00068381|organism=Clytia hemisphaerica|type=transcript|length=2808bpRun BLAST on NCBI protein sequence of TCONS_00068381-protein >TCONS_00068381-protein ID=TCONS_00068381-protein|Name=TCONS_00068381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp MHTVNADDRFTTKGYSYHHAYALSICGHPYKPSVCVNNATTKEKASELTARun BLAST on NCBI transcript from alignment at scaffold_483:296938..318208- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068381 ID=TCONS_00068381|Name=TCONS_00068381|organism=Clytia hemisphaerica|type=transcript|length=21271bp|location=Sequence derived from alignment at scaffold_483:296938..318208- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_483:296938..318208- >TCONS_00068381 ID=TCONS_00068381|Name=TCONS_00068381|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_483:296938..318208- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00068381 vs. Swiss-Prot (Human)
Match: K132L (UPF0577 protein KIAA1324-like OS=Homo sapiens GN=KIAA1324L PE=1 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 3.309e-46 Identity = 124/426 (29.11%), Postives = 219/426 (51.41%), Query Frame = 1
Query: 52 NCIKCEPGTYIDGW--KCVKCPKDTYSSGLDSIVGVQSCKKCPVNTISEPGSTECHSHCLISINSGDAALSQTFNLTALAGMHTVNADDRFTTKGYSYHHAYALSICGHPYKP-SVCVNNAT----------TKEKASELTAAICRNTMIPDNDK----LLSAQPISIGEYVESIEVINNTFTANSTGQEVKETAIDANGNIVFLFFSRRYTDVCLKGTSASVTLICDKTKTGQGKLEIGDETCKTETCNGCMYHFTWRTVHACARCTFNDYKTIQSGCTKGKKTLHYVWKENRKCMGGVEKPEDRTEECSIFEKSILDFKLVILGFLVFGLALAIIVLVLCY---RNKRLSYKYSRLIDASQSKDGELPAADTCAYXXXXXXXXXVILTRSKGRKPKILDRLKGMR-KQKDDFSEFETINLDSIK 1266
+C+ C PG YI+ +C +CP DTY S + + G ++C C + + + C+S C + +L ++ + L+ + ++ FT+KG Y H + +S+CGH K ++C NN T + + + + A +C++T+IP K LS+Q I + + + + T + +++ ++ F + S T C+ G S +V + C+ TK+G G + + + C TC+GC ++F W + AC CT +D+ I+ C +G + YVW E + C+ G+ PE + C +DF L + G V ++V + CY +N++L YKYS+L+ + SK+ ELPAAD+CA EGE+ E+EV+ + K +L +LK + K+K+D FE++ L + +
Sbjct: 617 SCVPCPPGHYIEKETNQCKECPPDTYLS-IHQVYGKEACIPCGPGSKNNQDHSVCYSDCFFYHEKENQSLH--YDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKMALCTNNITDFTVKEIVAGSDDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFIGV-TVETTLKNINIKEDMFPVPTSQIPDVHFFYKSSTATTSCINGRSTAVKMRCNPTKSGAGVISVPSK-CPAGTCDGCTFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLATC-----ETVDFWLKV-GAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYS----NKQSLLGKLKSLATKEKED--HFESVQLKTSR 1025 The following BLAST results are available for this feature:
BLAST of TCONS_00068381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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