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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068421 ID=TCONS_00068421|Name=TCONS_00068421|organism=Clytia hemisphaerica|type=transcript|length=2258bp
ATCAAATGAAAGaaagtaaacttttttcttttctcctttttaattcattt
ttacttttctttcagTCTAAAATTTCGAAATGTAGTAAGGAAACAACGGA
AACAAATGTTGTTGCTATTAAAAGAATTGAATatagaaaatttaatgaaa
ttaaatGAAACAACTAGAAATTCGCACTCGCACATAAGAAGGCTTGCGAC
ACTCACACGCAGactattgttttctttttgcaCTACATAATAGCTCGCAA
ATTATAATAGGCTTTTGACCTGTTTTAAATAGCTTGAGTTTCCCTATTAA
TTCGAGGCTACGAGTCGCCAATAAATAGGTTTTCAATAGTGAAAGAAGCC
GCTTGCGAGTCTCTGACACGCAAGGTTCGCGTACGTGTAAAGACATGCGA
AAGCCCCACTGTACGACATTGTGTAGTGGTATGCTTGGAGTCTGAGTAGC
CATCTCTGAATACGTGGTGTTGGACATTTTGCCTTGGATGTTAGTAGTGA
CAATAGCGGTTTGTGATCGGTTTCTACGGTAAGCCCACATTACGGCAAGG
GCTTCTCTTTCCGTTTGGCTGTATCTGGATTCAACGTCTGACAGTGATCT
GGAACCGTAGGATACTGGTTAGAAATCTCCGTTCGGTTGCTTTTGAAGAA
GGACGGCTCCTAGTCCGAATGGACTGGCATCAGTGACGACTTTGGTTTCA
GCTAGCGGGTTGTAGAATGCTAAGGTTGGTGACTCTATAAGTTTTTGTTT
TAAGAGTTTAAATGCTTCTGACTGTTCTGGACCCCATTCaaactttgcat
ttttcttGGTGAGACGTCTGATTGGTTCTGTGAGTGTAGAGTAACTGGGG
ATAAATTTTAAACAATAGTTCGTAAGTCCCATAAGCGATCTTACTTCTGA
AACGTTTTTGGGTTGTTTAATAGCATCAATAGCATCTTTCTTGGTTGGAT
CAAGTCTTATACCATCTGCTGAGATGATATGTCCATCGAAGTCGATAGAT
GGCACATCGAAAATGCACTTCTCTGGGTTTACTCGGAGTCCGTTCTTGAG
AAGGCAGTCTAGTAAAGCATATAACCGTTCGTCATGTTCCTCTTGTGTTC
TACCCCAAATTACTATGTCGTCGGAGATGTTCTTTACTCCCTCCAATCCA
GATAATACAATTTCAATCTGTTTCTGGAAGGCTTCAAATCCAGAATTAAC
ACTGTAAAAGAGTCTCTTGTATCGGAACAGTCCTTTGTGGGTAGCGAACG
TAGTGATGTTCCTTGATGATTCGTCTAATTCGATTTGGTGGTAACCGTCT
CTGAGGTCGATCTTGGAGAAGTGAGTTGCGTCATGAAGTTCTGCGGTGAT
GTCTTCTAGTTTTGGTATGACGTGACGCTCCCTGATAATTGCTTCATTGG
CTTTTCTCATGTCCACGCAAAGTCTGATTTTACCGTTTTTTCGACTACCA
GCAACGACTGGGTTAAGCCATGTGGTAGGACCATCGACAGGTTTAATGAT
GTCTAATTTAATAAGTCTCTCaagttcattttcaattttctctctTGAGT
GAGACGGTATGCGTCTGATTGGCTGCTGCACTGGTGTGACGTTTGGATCA
ATGTGAAGTTGTAGtttaaagttttgaagtttaCCAACTCCTTCGNTGAC
TCTATAAGTTTTTGTTTTAAGAGTTTAAATGCTTCTGACTGTTCTGGACC
CCATTCaaactttgcatttttcttGGTGAGACGTCTGATTGGTTCTGTGA
GTGTAGAGTAACTGGGGATAAATTTTAAACAATAGTTCGTAAGTCCCATA
AGCGATCTTACTTCTGAAACGTTTTTGGGTTGTTTAATAGCATCAATAGC
ATCTTTCTTGGTTGGATCAAGTCTTATACCATCTGCTGAGATGATATGTC
CATCGAAGTCGATAGATGGCACATCGAAAATGCACTTCTCTGGGTTTACT
CGGAGTCCGTTCTTGAGAAGGCAGTCTAGTAAAGCATATAACCGTTCGTC
ATGTTCCTCTTGTGTTCTACCCCAAATTACTATGTCGTCGGAGATGTTCT
TTACTCCCTCCAATCCAGATAATACAATTTCAATCTGTTTCTGGAAGGCT
TCAAATCCAGAATTAACACTGTAAAAGAGTCTCTTGTATCGGAACAGTCC
TTTGTGGGTAGCGAACGTAGTGATGTTCCTTGATGATTCGTCTAATTCGA
TTTGGTGGTAACCGTCTCTGAGGTCGATCTTGGAGAAGTGAGTTGCGTCA
TGAAGTTC Run BLAST on NCBI protein sequence of TCONS_00068421-protein >TCONS_00068421-protein ID=TCONS_00068421-protein|Name=TCONS_00068421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MRKANEAIIRERHVIPKLEDITAELHDATHFSKIDLRDGYHQIELDESSR
NITTFATHKGLFRYKRLFYSVNSGFEAFQKQIEIVLSGLEGVKNISDDIV
IWGRTQEEHDERLYALLDCLLKNGLRVNPEKCIFDVPSIDFDGHIISADG
IRLDPTKKDAIDAIKQPKNVSEVRSLMGLTNYCLKFIPSYSTLTEPIRRL
TKKNAKFEWGPEQSEAFKLLKQKLIESPTLAFYNPLAETKVVTDASPFGL
GAVLLQKQPNGDF Run BLAST on NCBI transcript from alignment at scaffold_483:334812..337069 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068421 ID=TCONS_00068421|Name=TCONS_00068421|organism=Clytia hemisphaerica|type=transcript|length=2258bp|location=Sequence derived from alignment at scaffold_483:334812..337069 (Clytia hemisphaerica)
GAACTTCATGACGCAACTCACTTCTCCAAGATCGACCTCAGAGACGGTTA
CCACCAAATCGAATTAGACGAATCATCAAGGAACATCACTACGTTCGCTA
CCCACAAAGGACTGTTCCGATACAAGAGACTCTTTTACAGTGTTAATTCT
GGATTTGAAGCCTTCCAGAAACAGATTGAAATTGTATTATCTGGATTGGA
GGGAGTAAAGAACATCTCCGACGACATAGTAATTTGGGGTAGAACACAAG
AGGAACATGACGAACGGTTATATGCTTTACTAGACTGCCTTCTCAAGAAC
GGACTCCGAGTAAACCCAGAGAAGTGCATTTTCGATGTGCCATCTATCGA
CTTCGATGGACATATCATCTCAGCAGATGGTATAAGACTTGATCCAACCA
AGAAAGATGCTATTGATGCTATTAAACAACCCAAAAACGTTTCAGAAGTA
AGATCGCTTATGGGACTTACGAACTATTGTTTAAAATTTATCCCCAGTTA
CTCTACACTCACAGAACCAATCAGACGTCTCACCaagaaaaatgcaaagt
ttGAATGGGGTCCAGAACAGTCAGAAGCATTTAAACTCTTAAAACAAAAA
CTTATAGAGTCANCGAAGGAGTTGGtaaacttcaaaactttaaaCTACAA
CTTCACATTGATCCAAACGTCACACCAGTGCAGCAGCCAATCAGACGCAT
ACCGTCTCACTCAagagagaaaattgaaaatgaacttGAGAGACTTATTA
AATTAGACATCATTAAACCTGTCGATGGTCCTACCACATGGCTTAACCCA
GTCGTTGCTGGTAGTCGAAAAAACGGTAAAATCAGACTTTGCGTGGACAT
GAGAAAAGCCAATGAAGCAATTATCAGGGAGCGTCACGTCATACCAAAAC
TAGAAGACATCACCGCAGAACTTCATGACGCAACTCACTTCTCCAAGATC
GACCTCAGAGACGGTTACCACCAAATCGAATTAGACGAATCATCAAGGAA
CATCACTACGTTCGCTACCCACAAAGGACTGTTCCGATACAAGAGACTCT
TTTACAGTGTTAATTCTGGATTTGAAGCCTTCCAGAAACAGATTGAAATT
GTATTATCTGGATTGGAGGGAGTAAAGAACATCTCCGACGACATAGTAAT
TTGGGGTAGAACACAAGAGGAACATGACGAACGGTTATATGCTTTACTAG
ACTGCCTTCTCAAGAACGGACTCCGAGTAAACCCAGAGAAGTGCATTTTC
GATGTGCCATCTATCGACTTCGATGGACATATCATCTCAGCAGATGGTAT
AAGACTTGATCCAACCAAGAAAGATGCTATTGATGCTATTAAACAACCCA
AAAACGTTTCAGAAGTAAGATCGCTTATGGGACTTACGAACTATTGTTTA
AAATTTATCCCCAGTTACTCTACACTCACAGAACCAATCAGACGTCTCAC
CaagaaaaatgcaaagtttGAATGGGGTCCAGAACAGTCAGAAGCATTTA
AACTCTTAAAACAAAAACTTATAGAGTCACCAACCTTAGCATTCTACAAC
CCGCTAGCTGAAACCAAAGTCGTCACTGATGCCAGTCCATTCGGACTAGG
AGCCGTCCTTCTTCAAAAGCAACCGAACGGAGATTTCTAACCAGTATCCT
ACGGTTCCAGATCACTGTCAGACGTTGAATCCAGATACAGCCAAACGGAA
AGAGAAGCCCTTGCCGTAATGTGGGCTTACCGTAGAAACCGATCACAAAC
CGCTATTGTCACTACTAACATCCAAGGCAAAATGTCCAACACCACGTATT
CAGAGATGGCTACTCAGACTCCAAGCATACCACTACACAATGTCGTACAG
TGGGGCTTTCGCATGTCTTTACACGTACGCGAACCTTGCGTGTCAGAGAC
TCGCAAGCGGCTTCTTTCACTATTGAAAACCTATTTATTGGCGACTCGTA
GCCTCGAATTAATAGGGAAACTCAAGCTATTTAAAACAGGTCAAAAGCCT
ATTATAATTTGCGAGCTATTATGTAGtgcaaaaagaaaacaatagtCTGC
GTGTGAGTGTCGCAAGCCTTCTTATGTGCGAGTGCGAATTTCTAGTTGTT
TCatttaatttcattaaattttctatATTCAATTCTTTTAATAGCAACAA
CATTTGTTTCCGTTGTTTCCTTACTACATTTCGAAATTTTAGActgaaag
aaaagtaaaaatgaattaaaaaggagaaaagaaaaaagtttactttCTTT
CATTTGAT Coding sequence (CDS) from alignment at scaffold_483:334812..337069 >TCONS_00068421 ID=TCONS_00068421|Name=TCONS_00068421|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_483:334812..337069 (Clytia hemisphaerica)
ATGAGAAAAGCCAATGAAGCAATTATCAGGGAGCGTCACGTCATACCAAA
ACTAGAAGACATCACCGCAGAACTTCATGACGCAACTCACTTCTCCAAGA
TCGACCTCAGAGACGGTTACCACCAAATCGAATTAGACGAATCATCAAGG
AACATCACTACGTTCGCTACCCACAAAGGACTGTTCCGATACAAGAGACT
CTTTTACAGTGTTAATTCTGGATTTGAAGCCTTCCAGAAACAGATTGAAA
TTGTATTATCTGGATTGGAGGGAGTAAAGAACATCTCCGACGACATAGTA
ATTTGGGGTAGAACACAAGAGGAACATGACGAACGGTTATATGCTTTACT
AGACTGCCTTCTCAAGAACGGACTCCGAGTAAACCCAGAGAAGTGCATTT
TCGATGTGCCATCTATCGACTTCGATGGACATATCATCTCAGCAGATGGT
ATAAGACTTGATCCAACCAAGAAAGATGCTATTGATGCTATTAAACAACC
CAAAAACGTTTCAGAAGTAAGATCGCTTATGGGACTTACGAACTATTGTT
TAAAATTTATCCCCAGTTACTCTACACTCACAGAACCAATCAGACGTCTC
ACCaagaaaaatgcaaagtttGAATGGGGTCCAGAACAGTCAGAAGCATT
TAAACTCTTAAAACAAAAACTTATAGAGTCACCAACCTTAGCATTCTACA
ACCCGCTAGCTGAAACCAAAGTCGTCACTGATGCCAGTCCATTCGGACTA
GGAGCCGTCCTTCTTCAAAAGCAACCGAACGGAGATTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068421-exon-scaffold_483-1491911889:334812..337069 | TCONS_00068421-exon-scaffold_483-1491911889:334812..337069 | Clytia hemisphaerica | exon |
| TCONS_00068421-exon-scaffold_483-1510915933:334812..337069 | TCONS_00068421-exon-scaffold_483-1510915933:334812..337069 | Clytia hemisphaerica | exon |
| TCONS_00068421-exon-scaffold_483-1575043694:334812..337069 | TCONS_00068421-exon-scaffold_483-1575043694:334812..337069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_483 | supercontig | scaffold_483:334812..337069 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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