TCONS_00069670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069670
Unique NameTCONS_00069670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069670 ID=TCONS_00069670|Name=TCONS_00069670|organism=Clytia hemisphaerica|type=transcript|length=2708bp
TAATTTCTtttcagtgaaaaaaataaaatcacacATGGAAGAACAGGAGT
TTGGTGGAGGGAATTTCAAATTATTCTACCCTACACAGCCCTTGTCTGAT
ATCATGAATAAcaatgaaattcaacaaaatttGTCGAAGGAGGATTCCTT
CAAATTCACCATGACGCAACTTCAACAACGTCATCCGTCCGTCACTAAAC
CGTTCCAAGAAGAATTCGTCGACGTTAACATCAAAAATGGATTCTTCGAC
GCTGCCAACAAAATGAGACGACAagGTGTTTTGACAGACGTATCGCTAGT
TGTTGATCAACAAACCTTTCACACTCATAAACTGATATTATGTTCATGCA
GTGATTATTTTACTAGCATGTTTAACGGTCCTTTGGCGCATCACGGCCAA
CAAGTCTTCATATCGGGCGTCAGTGCCCAAAGCATGGAAGCTATTTTGAA
TTACGTTTATACGGGATCGATTATCATCAACGAGGAGTTTATACAAGACA
TTTTAGAAGCAGCTtgtttgtttctattgaaaaactTACGCGAACGATGC
GCGCGATTTCTGCGCGACCGATTAGATGGTGGCAATTGTTTACAGATTTT
CAGTATCGCTAAAAGTTGTTCATTGTTGGCTTTGATGGAGGATTCCCTAG
AGTTCATCTCCGCGATCTTTCAAGATATTTCAGCGCTGAATGATTTTAAA
CAATTAAGTTTTGATGAACTTATTGATGTATTATCTCTTGAAGATTTAGC
AGTGCCAAGTGAAGATTACGTTTTAGAGGCAGCATTTCGATGGTTAAATC
ATGATTTATAcggacgtcagcaaaaatttgtaGAAGTGCTAAAAGCTATA
CATTTACCATACGTTAGTGACGATATGTTAAAACAGGTCATGGAGAATGA
AAAATCTTTACGTACTTTTCCTGAGCTGGAAATTCTCTTCCGTTCCGCCT
TACGTCTTACCGTTGAAAACTGGACTCTCTCCAAAGACAGTGATTTTAAT
TTACTCCAACCAAAATCATGGATAAATCCACGAAAATGTATTCAATGTAT
ACCGAGTCTTATCGCTATGGGTGGGCCTACATTGAACTTATTTAACAGCG
AACTTGGAAAATGGTGTGAAATAACGAAATGTAAACCACGGCATTGTCCA
GGTATGGATGTTGTTGGGTCCACTATCTATGTTGTAGGTGGTTCACTGGA
ATGGAAACGAAAACGTACTGGAGAGTATTACAACACTGAGAAAAATGAAT
GGATCCCAATGGCGGATATGCACACACCACGAAGTAATTTCGGTCTCGTC
AATTTGGAAGGGAAACTGTATGCTATCGGTGGTTATGATGGGAATTTCCC
TTTAAAATCAGCAGAGGTTTATGATCCACGTACCAACCAATGGACGCAAA
TCTCCGACATGACGACGGCAAGAGACGGCGCATGTAATGTGTCGGACGGC
GAATCGATTTACGTGATTGGAGGATACGACGGCCACGAATACAGACTGAC
GACAGAAGTTTATAAACCAGAAACTGGTCTATGGGATATCAGTTCTATTC
CAGAGACATCAGTGCAACGTCAGAACGCGATGTGTGTATACTTTGATTCG
AGTATTTACATTATTGGTGGTTACCATGGAGATACTTATCATTCATCGAT
GGAAGTATTAGACCTGGAAACGAACGAATGGTCTTTTTCAAGCCCCTTAA
GTGCACCAAGACATCACGCAGGCGCCGCTGCCATGAATGGAAACATTTAC
ATTTGTGGTGGTTGGAGTGCACATATTCCCGTCAGCCACGTTGACGTCTA
CTCTATCGCTCAAGATACGTGGCGTCGCGTTTCGCCTCTTCCCACACCAA
CAATGATTCGCTCAGTAGCGGTTAACTTCCCACGAAAATGCATCTTGAAT
TTATTCGCTAACTCAAACAGTGATATGGCGGCTTATCGTGCGTCAAGAAT
ACGCTCCTTGCGTTCCATCTCGGAGTCATCTTCTTCAGGTAATGAGAAAA
CACAAACAGAAGCTGAAGCTTTTTTGACTTCCTCGACTGATGAGTAGAAT
CTTGATTTTGTGTTAATATTTATTTCATGCTTTGAGTATATATTACCCTT
TCTAATCGGTCTCTTGAATCAAGAAACTTGATGAAGCTTGGCAAAGTAAG
TCTCTCAGTTCGcccatttttttaacaatataGTGTAGCACCTAATATGG
ATACCATACTAGCAAATAGCACGAAATCATTAACTACCCAACAAGCAGTT
TTAAGGTGCGTTTGAAAAATGTCTTGGGTAAAAAGCTTCGAGGGATCTTA
TAACATTTATATTTCTTATGAACTTTCATTTTGTATTGTATATAATTTAT
TAAAATTGAAACGTTTTTATAcaattaacatattttgaagtttaattttc
ttcaattttcgtTTTTGTAAATACGATACCAAAAGTATCAGGgacaaatt
tcatttttggtgACAACTTTTATGAAGATTCTCCTGCATCGCCTGTTTTG
TTTCTAGATGATCTTCAAAATGACAAAGCTCTTCTATAGCCGACCATTGT
CCCCCCACCTCCAAAgcaaattttcccaaaaattagtGTCTTTTCATTCC
CTTTGCTTTTTTGTATTAATTTTTTGCCTTTTGTAAAATAGAATATGATG
AATATATTTTGTGTTACTTGATATTCAAATAAGATTGACAGTATTAACTA
CTAAAGAA
Run BLAST on NCBI

protein sequence of TCONS_00069670-protein

>TCONS_00069670-protein ID=TCONS_00069670-protein|Name=TCONS_00069670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp
NFFSVKKIKSHMEEQEFGGGNFKLFYPTQPLSDIMNNNEIQQNLSKEDSF
KFTMTQLQQRHPSVTKPFQEEFVDVNIKNGFFDAANKMRRQGVLTDVSLV
VDQQTFHTHKLILCSCSDYFTSMFNGPLAHHGQQVFISGVSAQSMEAILN
YVYTGSIIINEEFIQDILEAACLFLLKNLRERCARFLRDRLDGGNCLQIF
SIAKSCSLLALMEDSLEFISAIFQDISALNDFKQLSFDELIDVLSLEDLA
VPSEDYVLEAAFRWLNHDLYGRQQKFVEVLKAIHLPYVSDDMLKQVMENE
KSLRTFPELEILFRSALRLTVENWTLSKDSDFNLLQPKSWINPRKCIQCI
PSLIAMGGPTLNLFNSELGKWCEITKCKPRHCPGMDVVGSTIYVVGGSLE
WKRKRTGEYYNTEKNEWIPMADMHTPRSNFGLVNLEGKLYAIGGYDGNFP
LKSAEVYDPRTNQWTQISDMTTARDGACNVSDGESIYVIGGYDGHEYRLT
TEVYKPETGLWDISSIPETSVQRQNAMCVYFDSSIYIIGGYHGDTYHSSM
EVLDLETNEWSFSSPLSAPRHHAGAAAMNGNIYICGGWSAHIPVSHVDVY
SIAQDTWRRVSPLPTPTMIRSVAVNFPRKCILNLFANSNSDMAAYRASRI
RSLRSISESSSSGNEKTQTEAEAFLTSSTDE
Run BLAST on NCBI

transcript from alignment at scaffold_505:36097..54219+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069670 ID=TCONS_00069670|Name=TCONS_00069670|organism=Clytia hemisphaerica|type=transcript|length=18123bp|location=Sequence derived from alignment at scaffold_505:36097..54219+ (Clytia hemisphaerica)
TAATTTCTtttcagtgaaaaaaataaaatcacacATGGAAGAACAGGAGT
TTGGTGGAGGGAATTTCAAATTATTCTACCCTACACAGCCCTTGTCTGAT
ATCATGAATAAcaatgaaattcaacaaaatttgtaAGAATTTACACTTAT
CCATCTTCTCGTATTCAAAATACAgggtttttcagaaaaaaatggaaaac
ttGTGTTATAAATTGCGTTTAAGTGCGTTTATAAGTGCGtattagactat
gctatagtctaagacgagtttcatctaagaggaacaaacgtgaagacggg
aattttttacggAAGTAGCCGTTGtcttaaacacagactctatccgccgc
gaaacatattacgttttataatatacaaattatgttatatcataataata
tattatacggacgatagcatcgtctaagtGCGTATAAGTGTGCCTAATAC
CTTTTTACTTTCCCAGTGAGTACATTCAAAGCGCTCCATTTCTCTTTTTT
GCGTTATATACATTTTATATGTGAATATCAAAAACTATTAAGTTGAAAAT
ATCTTTGAATGAAGGCTTAATCTCAGAAAAGATCTCAATGCAAGTAGCCA
CTTTGGTGGCAATAAATCTAGCAAATAGCTTGAATTTCAAGTGGTAAAGT
TTGGTGGTTATCGCAATTATTTTGTTAGAAATTTTTATACTAAACCCTTT
CCAAACAAGGGGAATACTATACAATCAataggattttttttggaatagta
ATCCCATaagttttgacaaaatttcAGAAGAAGATCTCTTTAGTTGGCAG
AGTGCTCAATGCTATCATGGGTGCACCATTGTGTTCTATTCTGAACTCTA
TGAGAGGATTTATCTTCAATATAGGCCACTCAGTTTTGGGAGAGTACTTA
AGAAAATGGTGCTTTCAAGAAACTGCCTTAAAAAGTTACAAGTGTTAAAG
AAGTTGATATAAAGCTTGTATAATCAATAGAAAATAAACACTGTAAAACT
TCTGCCCTTGAATTTGAATGGAGGAACCAGACATGCAGGTCTTGTTTGTG
AACCTGACGTAACACACTTCTAATTCACCCACAGAATAAACGTAGTGTGG
ATTTGGACTCTCGATTCTCGTGGCATCTTGCCATACATCACTAACCACAA
ACCCGTCGATCCATTTAACATATTGTGTAAATGTCTTGTTGTGCTTCGTT
ACGTTCCTTTGACCATGTAGCTTGAAGAAATATAAAAAGGGGGTTATAGC
TTTGAAATCACCAACAAAACTCATCACCATCGTTTGGCCGCGTCGAGACA
AACTTGAAgtattgttaaatatttgctaCTAATTACTATAAAGAAACGCA
GATCTGACTATTCACCTATCAGCTCTTAGCAGCACTATTGGGTTTTGCAA
GGACTAGGTTCTCAAGGAAAATCTTTTCTCAGTGCATGGCTTTTCTAGGC
TGCCTTTAAAACAAGTCAGGTAAATTCCTTCCAAAACTCATACTTCATAT
GAGTGATATTCCCTAAACCCCAGATGCGGTGTGTTAGTTAAGGGTGTATT
ACCCTGAAACAAACTTAAAGTTCACAAACACCAGACTTTAGGACTTACAG
AAATAACATAACCATCTGAACCAATGGGCATCCAGTATTCAACTGATCCT
TTTACCGCCATTGGCTCAGCTTTATTGTTCGCGTACCACTCTCCAATGAT
TTTCGATTTATTTTGTCCTAATTCAAAACATCCATCACCTTGGATAACTT
TCCTCGTACCTGGCCAAGGCTTGACCAATACATTAACATATCTGAACCAT
GAACCAGATAGATCCAACGATTTCGCATTGTTATCTACAAATAATGAATA
ATAATGGAAACTAACTCAGCTGACAGTCTCTGAACTTTGATTAAAAGCTG
GAAAGGCAATTGTTGTAGAGTTTGTGTGATCGATAGCCATTTTTTATGTA
TGAGGAATGTAACCTTTGAAGTCAtccaatgaagaagaaaaagaagtcat
tgtaaaTGAACTTCAGATCAACATAAATCATTGAAAACTCTGCAACGCTA
CTGTTAGTTAATGTTGTTCTTATGGTTTCCCGAGAgaatattgtattttt
atttctaaTGACCCTTAGTACAGTAATGCTATAGACTTTTAAGTGGTGTT
GAGCTTTTTGGGGTATTTGTATATGTCATCAATTGGGAACTATGTTTTAA
GGGAAAAACCTTCACGTGATTTTCACGTGTTTACCACGTggctttgttgt
tatgattctgTTGCGTGATACTTTACCTTTGGTATAGCCATCAATTACtg
atgaattattttttaattgcaGCCTAGGTACCACACTAATTTCTCTCTTG
GCTTGGATTTTACCATTCTGAGCCAAAAGTTTAATTATTATGTTTGCTAA
ATATTTTCTATATATTGCTTGATTGACGTAGATAAATATTTCTCAAAGAT
TGTTCCAAACATCTAaaccagtagcgtagacagggctGAAGATTGATctg
cgtaggagagcagatttttacgaCTAAGGTGGTATAAAAACATAATTACT
GAGTCGTTTAAATCTGCCCTCTTAAGCAAATGTTCCTTCaaccctgtcta
cgctactgtaaaCAACTAAAAGTTATTCGAACGAAACTTCTACAGATATT
TGACCATGACCAAACCAGTAtgtttacacattttttttttataagaacgt
caaaatttttcgaagccttcggatattcttagttctttggatttgaagcc
taaaaatgttcttaaaatgttcttattttcagcattttttgagcattttg
atgtaatttcttaagaaattgcatgNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattgcatgtttttaagta
tccaaagccttagtatgttcttagaatgttcttaaaattttgggcctcga
agccttatgttcttatatagtttgttcttataaaagaaaaaacgtgtagt
tgcaTTATCAGTGATGCATTTaaactagcctggatatccaggctgtaaac
tatttcacagtctagtttttgatattttatgttctggtttacagcctggt
ctccctagagcgatttgcattctccatatgagaatgcagtccgcttgctt
gcgctcacttcgctaaagccgtaaggaccaATACACGGCGCggagcaaaa
ataggatagtcccccacttgctagtgaagatagagctttctgttacatga
aaacatgaaaaagaagaagacagAGGCAAGttttttttccaagaaaacat
ggtctgatggttggtcatgataatgcatgcaaacttgttcatggactctg
gtgtaatctttggatgttttaaatggttttagatcttgtcAGGCTGCTTT
TTactaatttctgttttgctgccctgggttggctaggaaatttttggaaa
catgggtttgcactttcattctctagggagaccaaactctataattttag
aactttgtatgttgaggtaaattttgttttttctaaaattttgagcttgg
atatccaggctacattTAAACCTGACCGATCGCTGCTACGATCCTTGGAC
AGTTAGGATActtcaaaaattcaaagaataACGAAAATTGAGATGCGTCA
ATTTTACGTTAATGTTCTCTATAACACGATTTTTTCGACTTTCACATCTA
TCCAGTTTTAACCTAATTGAATTTAACTTTGAACAAGTCAGTTTTCAACT
AATTCTGGTTTTTCCAGTTGCCTTTCCCtctaaaagtgttttttttttct
cgcagCCCTTTTTTCATTCGTTCAACAATCAGAGAAAACCACATTAGAAA
TTGCCGGATGTCATTCGATCAAAAGATACGAGGTAATTGTCACGCACCTT
AATTATACCACTTCAAAATTTTGCTATATTTAAAAAGTCATAGATTGGGA
TTTGTTATTTCATCACTTCATATGAATCTGTGACAGTTGACAGTTGCAAG
TATTTTTTCTTGTTGTGATACAGACAACGTATTTTAGAGTgattttgaga
gatttttttaaGAGAACGAAAAGATGGAGTTGGAGCAATTCGAGTTAATC
GATGGTGATGAAACAAggtaaagttttctttttgtctCCATCTCCCCTAG
ACTCTAGAGGGctccattttcatgaaatttccaAAGCGTAGGGGAGAGTT
GATGCAAAATATATtcatttttaattcatttttgtgGAGGACGCTATCAG
TTTTATTGTTGTCTTTTGCACCCTTGTTTCACGTcctcggtggaactttt
tcccacagcggTGCACAGCAGTGATataaatttctatcgaaatcccgatg
gggatagaaattctattgtttccagctcaaaaaatgcagtggggtggttt
tggagtgcaatcttttacattaatttaaattgggatgaaaaaaaagtcag
atacctagtggggctgaaattgaaGGGTATTTTCCCATCTGAGACgttat
tttgaccaaattttcctGTGTGCCAGGGGCCCCACcgagtctgtgacaca
gggttgtttttattttgtctcaAGTTATAATATCACTCGGTCATTGACAG
TAGAGATCACTTATAAGTAAACAGGAATTTGTTTGGATCAGTTTTCAAGC
ACTTCAAATTGTATTCAAAGTACCTCCTCGACCTTTTCAAAACGGAAGTT
ATTGATAGCGCTAAGCTGAAACACGATCTTTCATTCGTATTCTGGAAAAA
CAGGATGTTCAAAACCAGATCTTTAGATGATAGTTTCTCATTTACAGCAA
GGATCGAAGGGAACACTATTAATTTTAAGAATTTGCTTGCAGTTTCTTTG
CGGAGAAAATCATGTATGTATaaagtgtttctttttattttgtttttcct
tgCTAATTTTTTAATGATACTAATTTTGCATTCTGCATCAACGACAGGTC
ACTTGCCTTGAGTACCCCTCCCCCGGTGGATTAATACGCAAGCTTcgttt
gcgaatgtttgcattAACTCTTTGATGCTTTTCAAGTGCTTCTAATTGTT
GTCATTCTGTTTTATTTCTATTCGAAATATCTGGAAGAGGTAAATTTCAA
ATTGACCAGTTTGTGAATAAAGGGTTTTTTATGATCGTGTTAATTAACGC
TGATAATTGTTGTCTTTATATTATTCCAGTAGACtaaatttgttgatttt
tgtaAGGGCGTATTCCATTCCATAATCAAGTTAAAACAATGTAGTAACTC
GGAATATCTAGATGAACTTTCATACTTTCTATTTTGAGGTGTATACAAGC
CTTTTTATTTGTTTCGTAAAGCAAATCTATTTTGATAAAGCTCTGTTAAC
ATACTTTGACAAAGGGAATTTCAATATGgtttatacacgtttttataaga
acaaactgtataagaacataaggcttcgatggacaaaatgttaagaacaa
NagaacaaactgtataagaacataactcTTCGATggacaaaatgttaaga
acaagttaagaactttttaaggctttgcggactcaaaACACacgttttct
taggaaaatgggtaaaaatggtcacaaaatggttaagaacattttgaggc
ttcaaaacttttggatgttcttatagaatAATGTGTAGTTAGATTTAGAC
TTATCTTATTATAAGTAGGTGCATGCTTAATTTGGTTAAAGACTTAAGCT
GCTGGcataaattagatttattgtAAACAGAAATGGGTATTGTCTTGgga
caatgatttttttcttgtgcTCTGTATTCCTGTATAGTGCCATACAGCAC
GaattttcgtgggtcacccttATGTCCTTGTGTCACGGGGGGCCGGGGGG
CCGTAGAAGAAATTCACTTGATTTGATTTCAGAAAGCTAGAGATGATAGA
ATTACATAGatatcaaataaaagaaaaagggaGATATTAATAATAAATGT
TTGATAAGCCTTTTCATTGAACCGAGTTTCGTCTCTCAATATATGAGAAT
ATATCAATCGAAAACTGTGAATGAAAATATGATCAGTTGATAAAAAACTC
GCTGgagaaaacatcaaaaaatatatttctcagAAGAAAGAGATTGTCTA
TATATATTTTGGTGTGTTGAAAGGAAACGTTTCTgaaattttagttttgt
tttttttgtggggAAAGATGGCTGTTGAGAGAGCAGAGGAACTCCGGTTG
TTTTGCCCGACCGAACCATTGGCCAAAATGATGAGAGGAGATGTAAGGTA
AGGATGTTCCTTTATCATTATGGACATATGACTTGATATTTCTGGGATCT
AAGGTTCTGACTTGATTTTTCCCGTTCGAGACCGTGTAGTGtctttcgct
agcgattttacAGCAAAAGTTCGATTTGTTTTGGGCCTAGGATATAGTAG
AAGCTTCTTTGTAAGCCTTCgactgaatttcaaaattctttccaaattta
agaaattctaataattatttctattttgggCCTCCTTATTTCCGATAGCC
TGAATAAGTCACGCACGATCTCACGAGACCGGCTTTTCGGTGATGAGAAT
ACCGTAATTGGCCATCGTTTATCAAGGATTAATTTACCATCTCATGCAAC
TATTCagtaaaagttttgatttttcaaagttcatttttgactgGTGCCTA
GGACTAAAGCTATTTTTGAAGTAATTTgcatcatcatcgtcatcgtcATA
TGTAACAATTTCGTAATTAGatgagattttttcttttatgcTGACTTTCT
AATTACTATTAGCCAATAATGACCccttaaaaagattttgatgtttttga
aaaaagcagTATCACAGCCAGATTTAcaagtttttcatgttttcaatcCG
ATTCATAAATCTCTCGTTCATAGTCATCAAGCTTAGAAGTAGACAGGTCT
TTAAAAATAATTGCGTcatgtttttgtgtttttacgGTCtgttcaaaact
ttaaaactacCCCTTTCTCGCAAACTACATTGATTTTCTGCCTTATCCCT
TTGCTTTATAAGCATTAAATCATGAATACGTGATGTCTCGATCATTGCAA
TCCATAGACAATCATACCCTCAAACACTCCTCTGTGGTTGTCATGACGAA
CAATGTTTCATCTGTTTCTCAGAAATGTTGTTTTCCTTCTCAGTTCTCAG
TTAACACACGGTCGAGATATGGAAAGAATTTCGATCATATTTATATAGCA
AATCATGATATGTGACCCTTTCAAGGTTTCAATTTTACTGGGATTTCGAA
GCAGTAACTCTTTAGTATCTGAAAACCTTCAGATTGCTCTTATAGCTCTC
TCAGCtttgtttttgatttcccaGCTGGATTCTCTCAAAACACAGTGCCC
TCtatcataaagaaaaaaattatcaatgcATAACAACTTTCCCACTGCGT
TTTCTGCAATAATCAATTCAACAGACTTTAAAACGATCGATTCGAAAGGT
CATTTCTAGCATAACATGTCACAAGCTATGGAACAAATATTTCaggatca
aaataaaaaaatttgacttgTCTACCACCAGGTCCAGAACCTCTAGGTCC
TTAAAATCAAACCCACCACATCACATTGGAGAAGCTTCGTCTTTCTCTTT
AGATAGAAGTAAAGTTTGCCCCTCAAAtctatattgagaattccgcttat
tttaacgtttttcaagatttaaagttgcggcgagaaagtcgattttgggc
tatctctttcatttaatcgaatatttcaatttgggaggggttggcagact
tccaagctatattctgagccttctTGGactatttttggatttttgggtcc
tcagatcctaaggtccttcctaagtcttaagtctagcgttaaaaatCAGA
GTTGAAATTCTGCCCTTCGAACCTACCCCCGGGGGgttactaggtttgcg
aggtgacgggtatgtccgagccgaaaatcgaaaattttgagagacaaaat
tttggtgattttgggaccctttgagagactttttcctaaattttgatcca
ttttttccaaattttggtttgattttcaccaaatNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNTtacaacttatcaagttttaattgctagcaa
actcgtaaaaaagtttgataacctaacgaggagtgttttctatgagttct
taatccacctattctaatccgttggtgTAAGTAACTTATTTCAGGCGATC
AATGTTTTTTCTTGGAAGGATTTTATCTTCTCCTCATCGTGTGCTCGATA
AGTTAATAGAGCAGTATTATATTCATATTAAGATTGTTCATTAAAGGTTT
GCGTGGAAGCGCCAAAAAAGTCCTGAGTTTTAAATCAGATTTTATGTCAC
CTTATTATAGGGGTTTCTTCGAATTTGGATACCCCTATGGATAGCGGCAG
CTTTAGTTTTAATCTTTAGGTTTCCTTataaaagtttgtgtgtgtttgAG
GAACTAGCTCGTTTTCTTTCCTATTCATTCTTTAAAAGCTAtggtttaca
cgtttttttttttaagaaactagttttaccaagcagcctcaatgtttctt
aagaaatcggccttttgagtcttaaatgtttcttacatgtttcNgcctca
atgtttcttaagaaatcggccttttgagccttaaatgtttcttacatgtt
tctaaactttttgacataatcagccttataaaaggctggattggaaggtt
cttaaaaaaacgaattaaagaatgtttttttttccttctcagcctcagca
tgtttcttagatgtttcttagtttttagacattctgagcctcatgtttct
taaaagtgtgtttcttaaaaaaaaaaacgtgtattctttatgattcttCA
GGTCGAAGGAGGATTCCTTCAAATTCACCATGACGCAACTTCAACAACGT
CATCCGTCCGTCACTAAACCGTTCCAAGAAGAATTCGTCGACGTTAACAT
CAAAAATGGATTCTTCGACGCTGCCAACAAAATGAGACGACAaggtattt
gattttttctcaCTCCGTTCAGAGGGATTCAAACACGTTTATAGCAACGA
AATCAACCTTTACCCTGATCTAGGGTACGTCATTATTTTCTTTTGCCGCG
AGCATAAAACACCTCTAATAAGTACCTTTTAACTAAAGATCTTCTATATA
TGTTATCGCACTGCCCTTTGGTCAAAATCTTTCGGCATCTGTTAGACCTA
GAAATCTAGCTTCAGTGTATACCCCAATGTTAAGTTTTCCAAGCGttgaa
tatatatatatactatAAGAGTATCTTAGCCAGTATTCTTACGATTTCTT
CCCATTTCTTTCTCAGGTGTTTTGACAGACGTATCGCTAGTTGTTGATCA
ACAAACCTTTCACACTCATAAACTGATATTATGTTCATGCAGTGATTATT
TTACTAGCATGTTTAACGGTCCTTTGGCGCATCACGGCCAACAAGTCTTC
ATATCGGGCGTCAGTGCCCAAAGCATGGAAGCTATTTTGAATTACGTTTA
TACGGGATCGATTATCATCAACGAGGAGTTTATACAAGACATTTTAGAAG
CAGCTtgtttgtttctattgaaaaactTACGCGAACGATGCGCGCGATTT
CTGCGCGACCGATTAGATGGTGGCAATTGTTTACAGATTTTCAGTATCGC
TAAAAGTTGTTCATTGTTGGCTTTGATGGAGGATTCCCTAGAGTTCATCT
CCGCGATCTTTCAAGATATTTCAGCGCTGAATGATTTTAAACAATTAAGT
TTTGATGAACTTATTGATGTATTATCTCTTGAAGATTTAGCAGTGCCAAG
TGAAGATTACGTTTTAGAGGCAGCATTTCGATGGTTAAATCATGATTTAT
AcggacgtcagcaaaaatttgtaGAAGTGCTAAAAGCTATACATTTACCA
TACGTTAGTGACGATATGTTAAAACAGGTCATGGAGAATGAAAAATCTTT
ACGTACTTTTCCTGAGCTGGAAATTCTCTTCCGTTCCGCCTTACGTCTTA
CCGTTGAAAACTGGACTCTCTCCAAAGACAGTGATTTTAATTTACTCCAA
CCAAAATCATGGATAAATCCACGAAAATGTATTCAATGTATACCGAGTCT
TATCGCTATGGGTGGGCCTACATTGAACTTATTTAACAGCGAACTTGGAA
AATGGTGTGAAATAACGAAATGTAAACCACGGCATTGTCCAGGTATGGAT
GTTGTTGGGTCCACTATCTATGTTGTAGGTGGTTCACTGGAATGGAAACG
AAAACGTACTGGAGAGTATTACAACACTGAGAAAAATGAATGGATCCCAA
TGGCGGATATGCACACACCACGAAGTAATTTCGGTCTCGTCAATTTGGAA
GGGAAACTGTATGCTATCGGTGGTTATGATGGGAATTTCCCTTTAAAGTA
AGCTTGATAAAATCTCCTTTTTACTTCACTGTACTATAAAACTTGAGCCT
AATTTTGGTTGTAAAATAATTCGGTCTACTAGGTAGCTCTTGCAGCTCAT
GTTTGCAAATTGGATTCTACAACAATTAGTATTTCCAATGAGCTAAACTT
AGGCGAATTAAATTGAACAGTCATGTGAACTTACTTTTGTTCCATCAGAT
CAGCAGAGGTTTATGATCCACGTACCAACCAATGGACGCAAATCTCCGAC
ATGACGACGGCAAGAGACGGCGCATGTAATGTGTCGGACGGCGAATCGAT
TTACGTGATTGGAGGATACGACGGCCACGAATACAGACTGACGACAGAAG
TTTATAAACCAGAAACTGGTCTATGGGATATCAGTTGTAAGTTGCGACAT
CCTCCcctatttttttctattttaagtCAACTCACTCCTTTTAATTCGAA
TcattttaactaaaacattggatcttgagctttaaatatgTATACTATAT
TCaagcttagttaactaggcctGTATTTACAAGACTAAGACATTATGGAC
GTTGAAGTTTGCCTTCTAGGCTACACTAGAATCTGCGTAAAAATATATgg
aggatttttttatttcctcgttttttgAAGTTCGgtcgagaaagtcgctt
ttggtcTTTTTCTTAAATGTAGGGGTTTATAAACTTCCAGGCAATATTCT
GAGTCTTGTTGGGCCACTATTAaacttttgaatcctcagatcctaaggac
CTAATCTAAGTCTAGCGTAAAAACACTACCGTTCCAACCAAAGTTAGccc
gcttccaaatcgtttgtggctactataagatttcgtgggattttcccttt
ttttctcaaatacatGTATTACGATCTTGATTGTATATCCTCCGTAATTG
ACGTAATTCTGAATGTTGTGAAAGAGTTAACTTACATGAAAACTCCATTT
GGTTTATCAGCTATTCCAGAGACATCAGTGCAACGTCAGAACGCGATGTG
TGTATACTTTGATTCGAGTATTTACATTATTGGTGGTTACCATGGAGATA
CTTATCATTCATCGATGGAAGTATTAGACCTGGAAACGAACGAATGGTCT
TTTTCAAGCCCCTTAAGTGCACCAAGACATCACGCAGGCGCCGCTGCCAT
GAATGGGTAAGTCGTGTTTGATTCTTTATGAATGTTTACTTCAGTATCTA
TCAGCATCATATTGTCCTTTAAGTTATTGCTTAATTTTTAGAGAAATTGT
ATTCTACTTTTCCACAAAGGACCTTTCTTGCATCtaatgtttcattttca
aagcgTATGCTtaatttatcgttctttaaacCGTTAGTGCTTAACCTCTG
TAATGTACAAAAAGGAATGAAATCGCTGGGATGGTTTCACTACTACGGTT
CGGGGGTTGGGATGGCTAAATTAGTCGTTCTTTATTgttttgaattcaat
ttttcgttgatgagaattttttttttcttctttctgaaaGAAAGAgtaaa
ttttaaattcaaaaccaCAGAATTCACAATCTTGCTTGGTTTCTGTATGA
AATAGAATTTGCCATGTacgatatttttgacatttcgtTGTGATTTACAA
CATATAATTTCCTCAAGGTTTCTTAACATGAATCTATTCTTCTCTTTTTC
TGCAGAAACATTTACATTTGTGGTGGTTGGAGTGCACATATTCCCGTCAG
CCACGTTGACGTCTACTCTATCGCTCAAGATACGTGGCGTCGCGTTTCGC
CTCTTCCCACACCAACAATGATTCGCTCAGTAGCGGTTAACTTCCCACGA
AAATGCATCTTGAATTTATTCGCTAACTCAAACAGTGATATGGCGGCTTA
TCGTGCGTCAAGAATACGCTCCTTGCGTTCCATCTCGGAGTCATCTTCTT
CAGGTAATGAGAAAACACAAACAGAAGCTGAAGCTTTTTTGACTTCCTCG
ACTGATGAGTAGAATCTTGATTTTGTGTTAATATTTATTTCATGCTTTGA
GTATATATTACCCTTTCTAATCGGTCTCTTGAATCAAGAAACTTGATGAA
GCTTGGCAAAGTAAGTCTCTCAGTTCGcccatttttttaacaatataGTG
TAGCACCTAATATGGATACCATACTAGCAAATAGCACGAAATCATTAACT
ACCCAACAAGCAGTTTTAAGGTGCGTTTGAAAAATGTCTTGGGTAAAAAG
CTTCGAGGGATCTTATAACATTTATATTTCTTATGAACTTTCATTTTGTA
TTGTATATAATTTATTAAAATTGAAACGTTTTTATAcaattaacatattt
tgaagtttaattttcttcaattttcgtTTTTGTAAATACGATACCAAAAG
TATCAGGgacaaatttcatttttggtgACAACTTTTATGAAGATTCTCCT
GCATCGCCTGTTTTGTTTCTAGATGATCTTCAAAATGACAAAGCTCTTCT
ATAGCCGACCATTGTCCCCCCACCTCCAAAgcaaattttcccaaaaatta
gtGTCTTTTCATTCCCTTTGCTTTTTTGTATTAATTTTTTGCCTTTTGTA
AAATAGAATATGATGAATATATTTTGTGTTACTTGATATTCAAATAAGAT
TGACAGTATTAACTACTAAAGAA

Coding sequence (CDS) from alignment at scaffold_505:36097..54219+

>TCONS_00069670 ID=TCONS_00069670|Name=TCONS_00069670|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at scaffold_505:36097..54219+ (Clytia hemisphaerica)
AATTTCTtttcagtgaaaaaaataaaatcacacATGGAAGAACAGGAGTT
TGGTGGAGGGAATTTCAAATTATTCTACCCTACACAGCCCTTGTCTGATA
TCATGAATAAcaatgaaattcaacaaaatttGTCGAAGGAGGATTCCTTC
AAATTCACCATGACGCAACTTCAACAACGTCATCCGTCCGTCACTAAACC
GTTCCAAGAAGAATTCGTCGACGTTAACATCAAAAATGGATTCTTCGACG
CTGCCAACAAAATGAGACGACAagGTGTTTTGACAGACGTATCGCTAGTT
GTTGATCAACAAACCTTTCACACTCATAAACTGATATTATGTTCATGCAG
TGATTATTTTACTAGCATGTTTAACGGTCCTTTGGCGCATCACGGCCAAC
AAGTCTTCATATCGGGCGTCAGTGCCCAAAGCATGGAAGCTATTTTGAAT
TACGTTTATACGGGATCGATTATCATCAACGAGGAGTTTATACAAGACAT
TTTAGAAGCAGCTtgtttgtttctattgaaaaactTACGCGAACGATGCG
CGCGATTTCTGCGCGACCGATTAGATGGTGGCAATTGTTTACAGATTTTC
AGTATCGCTAAAAGTTGTTCATTGTTGGCTTTGATGGAGGATTCCCTAGA
GTTCATCTCCGCGATCTTTCAAGATATTTCAGCGCTGAATGATTTTAAAC
AATTAAGTTTTGATGAACTTATTGATGTATTATCTCTTGAAGATTTAGCA
GTGCCAAGTGAAGATTACGTTTTAGAGGCAGCATTTCGATGGTTAAATCA
TGATTTATAcggacgtcagcaaaaatttgtaGAAGTGCTAAAAGCTATAC
ATTTACCATACGTTAGTGACGATATGTTAAAACAGGTCATGGAGAATGAA
AAATCTTTACGTACTTTTCCTGAGCTGGAAATTCTCTTCCGTTCCGCCTT
ACGTCTTACCGTTGAAAACTGGACTCTCTCCAAAGACAGTGATTTTAATT
TACTCCAACCAAAATCATGGATAAATCCACGAAAATGTATTCAATGTATA
CCGAGTCTTATCGCTATGGGTGGGCCTACATTGAACTTATTTAACAGCGA
ACTTGGAAAATGGTGTGAAATAACGAAATGTAAACCACGGCATTGTCCAG
GTATGGATGTTGTTGGGTCCACTATCTATGTTGTAGGTGGTTCACTGGAA
TGGAAACGAAAACGTACTGGAGAGTATTACAACACTGAGAAAAATGAATG
GATCCCAATGGCGGATATGCACACACCACGAAGTAATTTCGGTCTCGTCA
ATTTGGAAGGGAAACTGTATGCTATCGGTGGTTATGATGGGAATTTCCCT
TTAAAATCAGCAGAGGTTTATGATCCACGTACCAACCAATGGACGCAAAT
CTCCGACATGACGACGGCAAGAGACGGCGCATGTAATGTGTCGGACGGCG
AATCGATTTACGTGATTGGAGGATACGACGGCCACGAATACAGACTGACG
ACAGAAGTTTATAAACCAGAAACTGGTCTATGGGATATCAGTTCTATTCC
AGAGACATCAGTGCAACGTCAGAACGCGATGTGTGTATACTTTGATTCGA
GTATTTACATTATTGGTGGTTACCATGGAGATACTTATCATTCATCGATG
GAAGTATTAGACCTGGAAACGAACGAATGGTCTTTTTCAAGCCCCTTAAG
TGCACCAAGACATCACGCAGGCGCCGCTGCCATGAATGGAAACATTTACA
TTTGTGGTGGTTGGAGTGCACATATTCCCGTCAGCCACGTTGACGTCTAC
TCTATCGCTCAAGATACGTGGCGTCGCGTTTCGCCTCTTCCCACACCAAC
AATGATTCGCTCAGTAGCGGTTAACTTCCCACGAAAATGCATCTTGAATT
TATTCGCTAACTCAAACAGTGATATGGCGGCTTATCGTGCGTCAAGAATA
CGCTCCTTGCGTTCCATCTCGGAGTCATCTTCTTCAGGTAATGAGAAAAC
ACAAACAGAAGCTGAAGCTTTTTTGACTTCCTCGACTGATGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043382XLOC_043382Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069670-proteinTCONS_00069670-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069670-exon-scaffold_505-1491911889:36097..36228TCONS_00069670-exon-scaffold_505-1491911889:36097..36228Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1510915933:36097..36228TCONS_00069670-exon-scaffold_505-1510915933:36097..36228Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1575043694:36097..36228TCONS_00069670-exon-scaffold_505-1575043694:36097..36228Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1491911889:50048..50190TCONS_00069670-exon-scaffold_505-1491911889:50048..50190Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1510915933:50048..50190TCONS_00069670-exon-scaffold_505-1510915933:50048..50190Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1575043694:50048..50190TCONS_00069670-exon-scaffold_505-1575043694:50048..50190Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1491911889:50513..51593TCONS_00069670-exon-scaffold_505-1491911889:50513..51593Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1510915933:50513..51593TCONS_00069670-exon-scaffold_505-1510915933:50513..51593Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1575043694:50513..51593TCONS_00069670-exon-scaffold_505-1575043694:50513..51593Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1491911889:51795..51982TCONS_00069670-exon-scaffold_505-1491911889:51795..51982Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1510915933:51795..51982TCONS_00069670-exon-scaffold_505-1510915933:51795..51982Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1575043694:51795..51982TCONS_00069670-exon-scaffold_505-1575043694:51795..51982Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1491911889:52557..52752TCONS_00069670-exon-scaffold_505-1491911889:52557..52752Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1510915933:52557..52752TCONS_00069670-exon-scaffold_505-1510915933:52557..52752Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1575043694:52557..52752TCONS_00069670-exon-scaffold_505-1575043694:52557..52752Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1491911889:53252..54219TCONS_00069670-exon-scaffold_505-1491911889:53252..54219Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1510915933:53252..54219TCONS_00069670-exon-scaffold_505-1510915933:53252..54219Clytia hemisphaericaexon
TCONS_00069670-exon-scaffold_505-1575043694:53252..54219TCONS_00069670-exon-scaffold_505-1575043694:53252..54219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_505supercontigscaffold_505:36097..54219 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.19	2.57912	1.11421e-08	4.24178e-08	39.4913	21.8558	9.58789	24.4905	22.5197	16.287	10.9699	13.8767	7.04407	5.38399	0	1.12331	0	0.121352	0.0760325	0.00142839	0.69297	1.22326e-06	0	1.11687e-09	12.1909	10.7301	2.82246e-09	1.09219e-06	4.21463e-06	1.67063e-06
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006652Kelch_1
IPR000210BTB/POZ_dom
IPR011705BACK
IPR015915Kelch-typ_b-propeller
IPR015916Gal_Oxidase_b-propeller
IPR017096BTB-kelch_protein
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00069670 vs. Swiss-Prot (Human)
Match: KLH17 (Kelch-like protein 17 OS=Homo sapiens GN=KLHL17 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 5.442e-78
Identity = 173/580 (29.83%), Postives = 282/580 (48.62%), Query Frame = 2 
Query:  245 FDAANKMRRQGVLTDVSLVVDQQTFHTHKLILCSCSDYFTSMFNGPLAHHGQ-QVFISGVSAQSMEAILNYVYTGSIIINEEFIQDILEAACLFLLKNLRERCARFLRDRLDGGNCLQI--FSIAKSCSLLALMEDSLEFISAIFQDISALNDFKQLSFDELIDVLSLEDLAVPSEDYVLEAAFRWLNHDLYGRQQKFVEVLKAIHLPYVSDDMLKQVMENEKSLRTFPELEILFRSALRLTVENWTLSKDSDFNLLQPK------SWINPRKCIQCIPSLIAMGGPTL-------NLFNSELGKWCEITKCKPRHCP-GMDVVGSTIYVVGGSLEWKRKRTGEYYNTEKNEWIPMADMHTPRSNFGLVNLEGKLYAIGGYDGNFPLKSAEVYDPRTNQWTQISDMTTARDGACNVSDGESIYVIGGYDGHEYRLTTEVYKPETGLWDISSIPETSVQRQNAMCVYFDSSIYIIGGYHGDTYHSSMEVLDLETNEWSFSSPLSAPRHHAGAAAMNGNIYICGGWSAHIPVSHVDVYSIAQDTWRRVSPLPTPTMIRSVAV----NFPRKCILNLFANSNS 1921
            F A ++MR++G+L D+ L V  +    HK++L SCS YF +MF   ++   Q  V +  +  Q+++ ++ + YT  I++ E  +Q +L AA L  L  +R+ C +FL  +LD  NCL I  F+ A SCS   L++ +  ++   F D++   +F  L   ++++++S + L VPSE+ V  A   W+ HD+  R+Q    ++K + LP +S D L   ++ E  +R  P+ + L   AL+             F+LL  +      S   PR+C    P L A+GG +L         +++   +W  +     R    G+  VG+ +Y VGG        T E Y+   N W P   M T RS  G+  L G LY+ GGYDG   L SAE YDP T  WT ++ M+T R      +   ++Y +GGYD   +  T E Y+P+  +W  S +     +R +A     + ++Y+ GG  G +  +S+E    +   W   +P++  R      AM+G +Y  GG      ++ ++ Y+   + W   S + T      VAV    NFP      L  +S S
Sbjct:   79 FVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADAHSCS--DLLKAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEEVYRAVLSWVKHDVDARRQHVPRLMKCVRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALK-------------FHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGGSLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEVSMGTRRSCLGVAALHGLLYSAGGYDGASCLNSAERYDPLTGTWTSVAAMSTRRRYVRVATLDGNLYAVGGYDSSSHLATVEKYEPQVNVW--SPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSPKAGAWESVAPMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPPSSPTLSVSSTS 641
The following BLAST results are available for this feature:
BLAST of TCONS_00069670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLH175.442e-7829.83Kelch-like protein 17 OS=Homo sapiens GN=KLHL17 PE... [more]
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