TCONS_00069691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069691
Unique NameTCONS_00069691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069691 ID=TCONS_00069691|Name=TCONS_00069691|organism=Clytia hemisphaerica|type=transcript|length=2285bp
gtcgCGCTAGATTGATAAAGGCTAGCCTCTGATCTGAGGCCAAGAAcgta
aaacaataaaatgaaaagAGTTGGGAATTAGCTGACCGACTTTTTTCGGC
GAATTGATAACCTTTGGTTCTCAAACGATCATTATGTAACggtagttttt
ttattttgaaaatgttttgcaaGCTCAGGCTAGCTTTTTCCGTGAAACTT
CGCTGTCCAGTTTCAGGTCTTCACCGCAGCGCCTTTTTTATGGTTACCAA
TACTGTATTCGGTTAACAAGGCAAAAAGCTCACAGCGGTGGAGACCTTAC
AGCATCATCCAACAAAACGGTTTCGGCTTGTTGTTCGCTTGCGTTGGCCA
CATTACATTTCGAAAGACTGGCTGTGGAGCTTACTAACCAAATTATAGAC
CTGTTCATAGTACTTTCCAACATCGAAAATGCCACGTAAATTCACCTCTT
TGCTTGGACAAACACTAAAGGTTCCACAATTATTACGTTTGTCAGCAGCC
AGATGTCAGTCAACACAATCAACTGACCTtCTTTCAAGATTGGAACAATT
GGTACCAGAAAAGAGACGTGAAGTTGCTGAATTCAGAAAAGCTCACAATG
ATACCAAAATTGGAGAAGTCAATGTCGGAATGGCCTATGGTGGCATGAGA
GGAATCAAAGGCCTTGTCACAGAAACCTCAGTACTTGACCCAGAAGAGGG
TATCAGATTTAGAGGATACAGTATTCCAGAATGTCAAGAGCTATTACCTC
GAGCTGACGGTGGTAACGAGCCCTTGCCAGAAGGTATCTTCTACTTGTTG
TTGACTGGTGAAATTCCAACCAAGGAACAAGTTGACGCCATCTCAAAAGA
ATGGGCAGCCCGCGCCGAGTTGCCACAACACGTTGTGATGATGTTGAAGA
ACTTCCCTGAAGACGTTCACCCAATGACGCAATTTGCCACAGCTATTGCC
GCATTGAACAAAGACAGCAAGTTTGCCAAAGCATACTCTGAGGGCGTATC
CAAAATGGACTACTGGATGTACGCTTACGAAGATTCTGTCGACCTTATCG
CCAAACTCCCAGTCATCGCTGCTCTGATCTACAGAAACCTCTACAAAGAT
GGTAAAGTTGCACCCATCAACCCTGACAAAGATTTTGGAGCCAACTTGGC
CGATATGTTGGGCTACGACAACCCTGATTTCACAGAATTGATGAGATTGT
ACTTGGTGATTCACAGCGATCACGAAGGTGGTAATGTTAGTGCTCACACT
ACACATTTGGTAGGAAGTGCCCTATCTGATCCATACCTTTCCCTTAGTGC
TGGTATGTGTGGATTGGCTGGACCTTTACACGGCTTGGCTAACCAGGAAG
TCTTGGTTTGGTTGGATAAATTAACTAAAGAAGTCGGATTTGACTTGACC
ACTGACCAAATGCGAGAATACATCCgtgaaacattgaaaaaatcgGTTGT
ACCAGGATACGGCCATGCCGTTCTCCGTAAGACAGATCCACGATACACAT
GTCAACGTGAATTCGCTTTGAAACACTTGCCAAACGACCCATTGTTCAAA
GTTGTCGGACAATTGTACGAAGTCGTACCTGATGAATTGAAAGCCTTGGG
TAAAGTTGCCAACCCATGGCCCAATGTTGATGCCCACTCCGGTGTCTTGT
TACAAtaCTATGGTATGACTGAGATGAATTACTACACTGTTTTATTCGGT
GTATCAAGAGCCTTGGGAGTTTTACCATCGCTGGTTTGGGATCGTGCTTT
TGGATTACCCATCGAAAGACCAAAGAGTATGAGTACTGAAGGCCTTATGA
AGATGACCGGTTATTCGAAATAAATCTTGACAAAAAGATAGACTTATTTG
CCACCAAAATGATTTTATATTAGAATATTTATTTCTCATTACACCATAGA
ATGATAACATAAAGATATTAAAATTTGGataaaacaaagttttttcaCCA
TTggacaaaaaattgaaaatttttagtaGACAGACAAGTGtcggaatata
ttttttttttcaaatactaTTTTATAATTATTGTTAATTTTAAAGGAACT
TTGTTAAATATAATTTGCTCTGGAGCTTGTCCGTTATAAACACTTATCTC
TATCCATGTTTTCTCCCTCGTTTGGCTGAAATCATAGATAAAGGAGTCGT
CTTAGTCTttccatggaggtataaagaaaaacagcaGTTGAATTTGTTGG
TAATTGGTCGtcaaagtcttttgatttcttttataaaatgtatcaaaaga
aattctaaggctagcccgatgaaatacgacttttt
Run BLAST on NCBI

protein sequence of TCONS_00069691-protein

>TCONS_00069691-protein ID=TCONS_00069691-protein|Name=TCONS_00069691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MPRKFTSLLGQTLKVPQLLRLSAARCQSTQSTDLLSRLEQLVPEKRREVA
EFRKAHNDTKIGEVNVGMAYGGMRGIKGLVTETSVLDPEEGIRFRGYSIP
ECQELLPRADGGNEPLPEGIFYLLLTGEIPTKEQVDAISKEWAARAELPQ
HVVMMLKNFPEDVHPMTQFATAIAALNKDSKFAKAYSEGVSKMDYWMYAY
EDSVDLIAKLPVIAALIYRNLYKDGKVAPINPDKDFGANLADMLGYDNPD
FTELMRLYLVIHSDHEGGNVSAHTTHLVGSALSDPYLSLSAGMCGLAGPL
HGLANQEVLVWLDKLTKEVGFDLTTDQMREYIRETLKKSVVPGYGHAVLR
KTDPRYTCQREFALKHLPNDPLFKVVGQLYEVVPDELKALGKVANPWPNV
DAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLPSLVWDRAFGLPIERPKS
MSTEGLMKMTGYSK
Run BLAST on NCBI

transcript from alignment at scaffold_506:249526..262381+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069691 ID=TCONS_00069691|Name=TCONS_00069691|organism=Clytia hemisphaerica|type=transcript|length=12856bp|location=Sequence derived from alignment at scaffold_506:249526..262381+ (Clytia hemisphaerica)
gtcgCGCTAGATTGATAAAGGCTAGCCTCTGATCTGAGGCCAAGAAcgta
aaacaataaaatgaaaagAGTTGGGAATTAGCTGACCGACTTTTTTCGGC
GAATTGATAACCTTTGGTTCTCAAACGATCATTATGTAACggtagttttt
ttattttgaaaatgttttgcaaGCTCAGGCTAGCTTTTTCCGTGAAACTT
CGCTGTCCAGTTTCAGGTCTTCACCGCAGCGCCTTTTTTATGGTTACCAA
TACTGTATTCGGTTAACAAGGCAAAAAGCTCACAGCGGTGGAGACCTTAC
AGCATCATCCAACAAAACGGTTTCGGCTTGTTGTTCGCTTGCGTTGGCCA
CATTACATTTCGAAAGACTGGCTGTGGAGCTTACTAACCAAATTATAGAC
CTGTTCATAGTACTTTCCAACATCGAAAATGCCACGTAAATTCACCTCTT
TGCTTGGACAAACACTAAAGGTATGAACTCTAACTCTCTTTTAGGgctct
ttttccaaaaatcctATTTGCCCCAGAACAGGGACCTCGACTCCCTATTT
AACCCAgtataggaccctgccgacgcaccggacttaacgaacaccggaca
cgcgaaagtccggtgtaaaataagaattttttttaccaccggaaatctct
acaccggacttaaggaagtcggatgtccggtgtcggagaaggatattttt
ttccaccggacaatcaaaacacNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggactgacaccggac
ttattgcatccggtgtagcgaaaggatactttttgccaccggacaaatac
accggacagtccggtgcgtcagcAGGGTCCTCccagtatggatttcgtgt
aactaacgccgaagttcttcggcgtacaactgaaacgtttttggcgcatt
ggcgtaagggtacttacaaagatttttgattttcagttggcgtaaagtaa
taattccagctcggcgtcgaatgactccataatccatcggtTTTTAGCTT
CCATTTGGTTAAATTTGCTTTCGCTCGCTTACGTACGctcgcgtcaattt
attaattatgttggcgcatgcacctcttttcccatcttgcacccttattg
aaaaattgaatgatggtacaaaagaaattttgcttggcgtgaggcttgct
gcacggaaaaatatcttcggcgcgaGATTTCATGGAATCCATACTGGTAT
TTAACAACATGTAGACCAAATTTTAAACTATCATAGGCCCACTAGATCAG
GCGgccatcgaaaaaatgctctgttcgcgtcgcaaaaggtgttaaaaatg
catgcgggcggacgggtGGTTGGAAaaattcccgggttttttttaattac
gCCAGTAGTAATTCGGGGGCGGGTGGTGACGcgaacaaaacaatttttcg
atggccgtcAGAGCGAttaagaaaaaagctatacttaaAAAGAACATATT
GCttttcctggatttttttctGCTTCTCCGCATCGTAAAAgtcagctaaa
accctgtaaaatctcATGCAGAAAAAACTGGAAAATGGCCTAAATTTCAG
AACAGAAAATTTGCTGGAAAAACTAGAAATAGGTACATTTCCAAACAGAG
GAAAGGATTTaggcatggggggggggggtcccaaaataatattttcaatg
gaaaaagggggggggggggtgcgaaaTATTTTTGGGCAACTCAAAAGATG
AAGAAAGGAAAGAGGGAAAAAATTtagcaagggggggggggggcgaaatt
ttttgaaccCTTTTGAGGGGgggttcaaaaaaattttccaggtTAGGGTT
ggtgcgaaatttttttttgatttttttaaatatcctcCACTCTCCCCTGC
TGTAGTACTGATCCCTCCCAATAATGTCAGGAACTCGTTACAATTATTTA
TGTGACAAAAACATATGATTTTCATAATTtaatcatagtgtcctcccccc
cccctttattgtctagtattccttttgcagcaaaattttacgtttgtgtc
aggttgaaatttgagaaatttatatcggtatatggggggaactgatattt
tcagaattttctggggggaaagcaaaaaagaggggggaaactaaaaaacg
aaaagtcatagggggaaaaaaaagaggggtgagattaaaaaaaatcaaga
atttggtggggggaacaaaccctggaggacactatgttaATGTTATCTAG
TATGAGTTCAGGCTTTTTAGGATTTTGATAAGCTTAGATCTTTATGATCA
ATTGgaaagaaatttcttttgaaaatctggAAGGTAATTATTTTGCACTC
GCTTTTAGCTGGAAACAGGTACAGATTTTTGGGTGAAGGCTGGAAAAAGG
CACATTCTCCAGCTGAAAATACCGGGGGAAAGGTGTGTTTTTGGCCAAAA
AGCTGGATTTTTCCCTGTATCCATttaacttcaaatttttcataggcaaa
agattttttcctatTTGACTGTCAAgcaaagaaaacaagttttcaTCGGC
AATTCTGACCTTccaattattcctatctctgaatgagggtgtcaaaatta
gaagagggatgttaaCATTAGACCAATTTCAGGTATTGATACTGGATAAG
ATTCTGTCGTCACAAATATGATGTCAtaattttctgacaaaaatttactc
attttcacAAGGGGTACAGCTGCAGGGTACTAAAAATCTGTCTTGGGTAC
TGCCCCTTTTTAGTACCTGGTACttacttttttgaagaaaaaaatatctc
aCCCCTTTTAAGAAGCCAGTTACCAAGGAAAATGTGGCTGCAAATAAACC
TTGGAAACCTAATGTCAACACTGAtcttctaattctgacacctTTCTTTT
GAGATAGGAATAGTAGGAAagtcagaatcactgatagacaataagatttt
ttcctcccttaaccactaagcaaagaattTAGTTTCTACCAGGGATTCTG
ACCTTCTTATTTTCCAATCTCTAAAGAATGGTGTCAATTAGAAGAGgggt
gttgacattagaccaactacGGTAGAAGTCAATTTCACCTCATCAAAATG
CGGGAGAgcttcaaaataatattttctttaaattaaatcttattaggtat
ttttttttagaaaattggctaaattgataaatttttaccAGTATTTCCCA
GCAAAATGACAAAATTCAGTACCAGATATTAGCTTGAAATGAGTACCCTG
TACTACATTTTGGGTAGGGGTGGGTAAATAGTTTTACATATATAAAttgg
tcagtgtttgaggtcagGCAAAGATTCCGGTAAATAGCCTATCCAGTGGT
GTGCAGATTTAGATCTATCattgatctttttcttgggaagttcaaatttg
tttttgaggTTGGCTTGGgtcaaattttctcatttatATATGGTTCAAAA
TTTAGGTACAgtaatttctcaaagtttttgaaaatgtgaatttctttaaa
aagcGCCAGTCTATTAAATCCCTGTAGAAATTTGgcggcacatttttttg
cttgtgagGTAAACGGTTAAGTCCTTCGCATCATTTATTTTTGGTATACA
TTTCGGCAGGACgttagtgtgactaactgtattGTAGAGAACATTTAGTG
TCAAGTTTTCAAGTCTTTAAAACTtctctctagatcaaaagttatggaag
GGTTCCTTGAGAAAAGGAACCCCGAAAAGGTTTGGTAAAAATAGGGTTAA
CTATTCTATGATATATGAACTTATCTTTTTTTCACTTCTACACTGAACTT
GGCCTAAGGCCAGGCCCAATCGATTGGTTTCGACCAGTTTCgacatcaaa
attcaaaatttcattaatgAACATAAAACATTTTCCATGGATATTTTAAT
AAGTTGATGtttattttacaaaagaaattaaGTTGCTGTTTCGATTAATG
TATTGCCATTTTCAAGCTTTGTCTCttaaaattgaatgtttttgcCCAAG
ATATCCTAAAGAATTAAAACAGGACGTTTAAAACTCATTCCAAATGCACA
CCCATGCAATCACCAGACTGAAAGAAGGGACGGGGTTGGAATGGGTTGTC
ACCATGCGACCAACCTACAGTGTTAGAAACTTATTTCATGAACTTTGCAC
TCCCTGTTTATTTAAATGTGGcttctatttttgttttgaaagccTTTCTC
CAAAGGAAGTTGTTAAATACTACAATGCCATACTTTGCATTTGTTTTGAG
AgataacattttgattttttcattgcaCTGCATTCTTGCAAAacaatttt
gtcaaatttaatgGTTTGAATTTTCTGCTTTAGGAGAATTACATTGACTA
ATAAAATGTGGCAACTTTTGTTTCTAGTTTTGTCCTTTGTAAAGATTTTC
CAGATTTGCTCACTTTCCTAGTCTACCTGCCTGGTGTTGACTACTACTAT
GGCATTTGCTCTAACCCTTTGGTTACTGGCTCAGGCTACATCACATATCG
AATCAGATTAAAGTTGAATTTCGATTATTACTGTTTAaggtagcctggga
atccaagctcataatcttagaaaaaaaaacataaaataccttacctcaca
aagttctaagattatagagcttggtgcaggtagattattagtctgacaca
gaatgttataaacagtctgtgtgtgaacccttgttgacagactttctaaa
ctttggaaacccaggcaaacacaccataatcaacttaccataaaaacttt
ttcaaaagctctaaagactttcaaaactactaaaatcCACATCAAAACAT
GAGCCACATGTATTAGACTTCCAGTCAACAaccattttgtttttaaatga
atctatgttttcattttcatttgttttcctttttctgcagagtctgcttt
ttccataaattatgcgtgcgcatcgaaattatcaaaatgcacGCGAAAGT
ACTGTTAAGTAATACACACAAAatctggccaatcaggccgaacctgcatt
gcagggaaaaaaatttccctgcaggcgagttacctgcgccaatcattaaa
caagcagcaaaaatattataaaatagaCTGTGAACTGTGAACAATATTCT
CTATATTTGTGTCACTAACAGCCTTACTTGTTGATTCTTAAATAACTAAG
CAACATTACTAGGGTGATATTTTATGAGATACTGCAAACAATGATGttta
aatcttctggacaagaaatATTCTATCTCAAGTCTAAAGTtaatcacgac
acttggacttagaaattttgcggtaaagcgcaaattattgtcaaagtagg
atttctgaatgagtctaaaaagtttttgaataggaattaagtactgttaa
acccatttagttgaagtaacctgcttagatttaagaataatattcaccaa
actgtgaaaggttgaggcttttcctgaaaatataggccctggaatggtag
gaaaggccaggTGTCAGTCTCACTTTTCTATATATtctatacttaaaaat
aaagaaacagtcataaaatgtcatctgttgatggaaataacctgaatttt
tttacagttgttcccttaaatgccaatgattagttggctagagaagatca
accaatattttgacaaaaaattacctttagagcccttaagtgggcctgat
ttagccttttaagagggaaaaaaacaacgaagttaaagcaaattttcaat
cgatcatatctttaagagacttcaaacccccactgagattttttgaggtt
ataaactagacctactaaggaagcattactgaaagtttcaaaaaaatttg
ttgtgggttcaaaaagatacgccatcttgaattttgctccagatctgcca
aaatagcaattttttcagccatttttgacggttacgcaaaaatagaaatc
ctgaaaatgttatttttgtgggcaacacccaccagtaaaccactccaggt
caaaagtttgcttcaaaaaagtctcaaggaccatcagcagacagctaaaa
gtgcttccaaacccagattacgcaaagtttgaagccctctacaggaggtg
ctagagattttcgggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaggtgctaga
gattttcggggaaaattttggagactcaatttgattttttctgattccct
acaaaaagttcttgaaatccactgtaaatcagctttctgtaatgtacttg
aataaaaatatacattggctttcaaaatctgctcctcaccagagttcatg
atttttaggggtcaattttcgcttagtagcctatctttgagacgctgtat
cttcaaggtgaaattttcagggtcttattttcttgtgtgatggatcattt
ggtcaaaatttcatcaaaacccaagaggatgaggtatcacaccctgaaga
ctcttaaaacaAATGGCtcttaacgcttggattcccaggcaaAATGTTTA
AGGTTGAtagtaaaaaaataataatttccaGTGAGACAATCTTTCATGAA
TTTACTCTTTTAGGTTCCACAATTATTACGTTTGTCAGCAGCCAGATGTC
AGTCAACACAATCAACTGACCTtgtaagttttttgaaaatactcattttg
attttaattttatttctgCCTGTGTTATAATATGGACTCAAAATCTTTGT
CTGCATAAAGCACTGCTTACAGAATATGCTTTATAGTATGGTTATGACTT
TTTCTGGTTTGAAATAATGGTGTTTGTGAACTTAAAGAATCGAATTAGGG
GCTTGATGattaattttaatcaaaatggTACCCCATTTCATATTAGTTTA
AAGAACTTTGTTTATTATAAGCATAATAATAGCAatgttaaaaaacaaaa
tgaattaACTCAGTGTACAATACTTCATTCTCTTATATTTCATGAGGTAA
TTTTTTGAACATAAAATGAGCAGGCTTCAGATcctatttctttgaatttt
tcaaacataatCAAAAGTTACCTCGAGTATTTCATTGTCAGACAGCAACC
CTCTTGATGTTTTTTATAGAcatattcattttattttcgtGTTTCGTTTA
TCAGCTTTCAAGATTGGAACAATTGGTACCAGAAAAGAGACGTGAAGTTG
CTGAATTCAGAAAAGCTCACAATGATACCAAAATTGGAGAAGTCAATGTC
GGAATGGTAAGTGATTTTTACTTTCTCAATTTCCTTTTCATTTCAATGTA
CACGAATCGGAGTAGGAGATAcctgacaaaaaaatcattttagataatta
aaaaaagaccctTATCATGCATCGTGAGAGAGGCCTCAATGCCCCttaaa
tgaacttttttgaTCACTTTGTAAATAACCAATTGACTTAGAATTTTGAA
AGTGTGCACCAGTGTGCACCAAATGTACATTGTCATCCCCATATtggaat
tctttgaaaatgccAAAAGTTAGGAACCCAACTTTCTTTCACTTCtgttt
ttgctcaaattttgacatggagCGAAGGGTTATTACTTTTGTCTTCTGAC
CATGTCGTGCATTGAACAGACCCacccaaaagaaaattttctttttgttt
ggaTAAAATTCTTTCTCCATTTCTTCAAGATGCTTGGGTTAAATCAGTGC
AGctctactgtttttttttatataaaaagaagaaaataaaagttttggat
TATTGGATTTAAAACAATTGAGAATAAACAATTCTTTTTCAGGCCTATGG
TGGCATGAGAGGAATCAAAGGCCTTGTCACAGAAACCTCAGTACTTGACC
CAGAAGAGGTAAGAGTTACAAAAAATCTCTTATGTATTTGGGCAAAATAT
GAATTAAGGAGGCCTGCTGTCGCACTGATACCATATTTTGATCCGTCAAT
GATTGCGATAAGTNGGAGGCCTGCTGTCGCACTGATACCATATTTTGATC
TGTCAATGATTGCGATAAGTGTTTCGTTTTTCTCCAATTTGAAATAATGT
CTCGTAAATGTAATCCTGTTAAAAAGGGTTGGCCAGAATTAggatgtttt
ttatccacgaAATGCTCTGCTTATGGAATTTTAGGTCCTCCAACGTTTCT
GAACTGTCCAAGAATTTCAGATCTAAACAAGTTTAATTTTGATACCTGTT
TTTTATTCTGTGTGATCAAATCCTGCGACTCAGAACTGGATAAATTAAAA
TAGCACCCAACGAAGATTTctttattattcaaatttttttaattggaGAA
TGTCCAAACTTGTTGTATGTAATGCTAATGGCTGTCGACAAATTGATTAT
TTGAGGTTTTTTAGTCTACTTTTTTATTCCATATCGATGATCATTATATG
TAATCGACTTTAAAAACCTGTTTATTTTTAGGGTATCAGATTTAGAGGAT
ACAGTATTCCAGAATGTCAAGAGGTAATCTATTATTCTTTTCATTTAAAT
ATCCAATTCATCTCAGGGCAAAAAAACGCTTCCGATCATATGAAGGACTG
TTTTTTCCTGCCAACGACAATATTATGCTCTTGTTAACTTGCCGTTGCTT
TAAGCACCTTGATGCTTTAACTAGTTCTCCCTAAAccttatgatttttat
gaaagtgTTCCTTTTACTATCCAGATACCCAACTGTAAAcgaaaaaaaac
cttttctcCTTATTTTACAGCTATTACCTCGAGCTGACGGTGGTAACGAG
CCCTTGCCAGAAGGTATCTTCTACTTGTTGTTGACTGGTGAAATTCCAAC
CAAGGAACAAGTTGACGCCATCTCAAAAGAATGGGCAGCCCGCGCCGAGT
TGCCACAACACGTTGTGATGATGTTGAAGAACTTCCCTGAAGACGTTCAC
CCAATGACGCAATTTGCCACAGCTATTGCCGCATTGAACAAAGACAGCAA
GTTTGCCAAAGCATACTCTGAGGGCGTATCCAAAATGGACTACTGGATGG
TAAGGTTTATTCTTTTCATAATGTTACAATGGGCTATTCCAATAAATTTC
AATACAAGGGGCGAACGAACCTTTTTTTTATGTTTGGATTcccccaaaat
ttgaaaatttgaaaaaagcccttgcaaaaaattcttttcaaatctTAAAG
TGGCGGCCGACGGACTAAAACCAGTTTTTACACCCTGGTAAAATGAAAAC
AACACTCTTTTAGACCCCTGGAAATTTATAAtcggattaccccctggaaa
tgttcgtccaaccccccccccccaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNccccccccccccaaccctttatggatatgaaatggaatggcccaata
ttACTTTCAAGATATTGATAGATAGTCCAGTCTGAATAGAAATTGCAAAA
CAGAAATTTCTATTCACTCTAAATTAACTTCTATTTTCTCTTCATTTTAG
TACGCTTACGAAGATTCTGTCGACCTTATCGCCAAACTCCCAGTCATCGC
TGCTCTGATCTACAGAAACCTCTACAAAGATGGTAAAGTTGCACCCATCA
ACCCTGACAAAGATTTTGGAGCCAACTTGGCCGATATGTTGGGCTACGAC
AACCCTGATTTCACAGAATTGATGAGATTGTACTTGGTGATTCACAGCGA
TCACGAAGGTGGTAATGTTAGTGCTCACACTACACATTTGGTAGGAAGTG
CCCTATCTGATCCATACCTTTCCCTTAGTGCTGGTATGTGTGGATTGGCT
GGACCTTTACACGGCTTGGCTAACCAGGTAGGGAATcgttgttgttttgt
ttaaaagtaTTACTTTTTGAACACCTGTTTAATAGTTTGAAACAACGAAT
CGGAATACTCGAAAAATGAATACTTTAATTTTAAGAACTCTATGTTTATG
AATTGTTTCGCGTATGTTGTTTACTAACTGGCAGCATTTCGTTTTGTTTC
GATTGTAGGAAGTCTTGGTTTGGTTGGATAAATTAACTAAAGAAGTCGGA
TTTGACTTGACCACTGACCAAATGCGAGAATACATCCgtgaaacattgaa
aaaatcgGTAAGTCTACGTAATTCTGCGCCAAAATTGCGTTTGTTAACAG
GGGAATGATATTTTGTTAACAGGNAGTAAGTTTACGTAATGCCCCAAAAT
TGCGTCTGTTACTAGGGGAATGATATTATCAAAACTGTGATTTCAGTTGA
CAAGCTTCGAAAATTGAGCTTAATTATGTATGTTCAGCGGGGAGTCTTTT
AAAGCATATATCTCAAGTTGCTACTAATATTTCATTTGCATAATTTACTT
GATTGATTAACTATCAGAGAGACCACGCCGGTTTCCGCTCAGTAAAACTT
GAAATCTAATACAGTTGAGACTCCATAACTTTACAAGCACGTGGGTACAA
ATTTGTTCgaggaaatttcgagttgtgAAGGGATGAGAAAACTtgttgtt
cgagttaaagagacttaggctacgtcatatcttcctttgtttcgagcgta
aaactcctactcttcgggatatgagcactgctcttgttttgaatattgaa
attctccggataaatcgcatgcgcactgaggttttaatgaaacaatagag
agtttctaAACCtgagccaatcagctgtgttttaaacattcttttatttg
aaatctctattgatataaacatcttttgtgaaagttgtctattatgttta
aacccttttaataagcaattcccggtgggggcaAAGTTaatagagaaaga
aaaagaaaaatctttttctttctctattAACTTTGGTGGGGGtaactagt
ggccgcctatagcagtgcctatagaccaagagtaaggcctaaaagcctgg
agctgtctattgtgtggACTAAAGAGACTCTACTTTATCTTCACATTTAC
AGCTTATTTTGATACTTGATTCTCATTTAGGTTGTACCAGGATACGGCCA
TGCCGTTCTCCGTAAGACAGATCCACGATACACATGTCAACGTGAATTCG
CTTTGAAACACTTGCCAAACGACCCATTGTTCAAAGTTGTCGGACAATTG
TACGAAGTCGTACCTGATGAATTGAAAGCCTTGGGTAAAGTTGCCAACCC
ATGGCCCAATGTTGATGCCCACTCCGGTGTCTTGTTACAAGTGAGTTTTT
TCTTCTATGAATATGGTTTTACTTGGCATTACCTATTTGGTTTGCCCCTT
CTTCAAACAAATTCAATTTATTATTGCTTCATACATTGTGATCTTTGGAA
AGctatcatttttggacctaccccggtggaggtcctataagttatcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttactagcttttctcgggattggctcattagtttttcctaatttTTG
GCAAAAAGATGCAAAATGGTAATGCCCAAAATGTGACGGAGCCCGATTTT
CGAAAAAAATTCATTCGGTCCATTCAGCATCTAGCTTGTTTCAAATGCAA
CAATCAGAAGCATCAAAAAGTAAACAATCACCTGCTCTTTTTTCAACAAA
CCTTCCTTATTAAAATTTGTAGAGGTGGCATATAGTGTGAACCCCCCCCC
CCCTTTTTTTTTTTAAGGGGGATCCAACTTTTCTAAAAGTGCTTTATAGG
GGGATAGGAGATTTTCCTAATAAAATGGGGGTTTTAGATTTATGGGGGGT
CTTGTAAAAATAGGGGGATAACAACTTTAGGTCAAAATATTTATCatatt
ttatattgatttaaatATTTGGTGTGGGACAACTAAAAAACATGTGTAGA
TAGCTAAATCTTCGCTTGCGGCGCcatgtttttggttttgaatgaCTGGT
TGACTGCTGCTGTAAATAGCACGGGTTCGACATTTTTTGAATAGGAATAG
AAgaggataaaataaaaagagGGGGTGctcagacccctctgcacactttG
GTTTGACATTCACTGAATATACATACATTTGTCAAATTTAGGAACAAAGT
GATGGATAGCCTCCTCACTGTACTGTGCCACATTCTCATAATATTCAACT
ACGGTActtcaatcttttctttttagtaCTATGGTATGACTGAGATGAAT
TACTACACTGTTTTATTCGGTGTATCAAGAGCCTTGGGAGTTTTACCATC
GCTGGTTTGGGATCGTGCTTTTGGATTACCCATCGAAAGACCAAAGAGTA
TGAGTACTGAAGGCCTTATGAAGATGACCGGTTATTCGAAATAAATCTTG
ACAAAAAGATAGACTTATTTGCCACCAAAATGATTTTATATTAGAATATT
TATTTCTCATTACACCATAGAATGATAACATAAAGATATTAAAATTTGGa
taaaacaaagttttttcaCCATTggacaaaaaattgaaaatttttagtaG
ACAGACAAGTGtcggaatatattttttttttcaaatactaTTTTATAATT
ATTGTTAATTTTAAAGGAACTTTGTTAAATATAATTTGCTCTGGAGCTTG
TCCGTTATAAACACTTATCTCTATCCATGTTTTCTCCCTCGTTTGGCTGA
AATCATAGATAAAGGAGTCGTCTTAGTCTttccatggaggtataaagaaa
aacagcaGTTGAATTTGTTGGTAATTGGTCGtcaaagtcttttgatttct
tttataaaatgtatcaaaagaaattctaaggctagcccgatgaaatacga
cttttt

Coding sequence (CDS) from alignment at scaffold_506:249526..262381+

>TCONS_00069691 ID=TCONS_00069691|Name=TCONS_00069691|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_506:249526..262381+ (Clytia hemisphaerica)
ATGCCACGTAAATTCACCTCTTTGCTTGGACAAACACTAAAGGTTCCACA
ATTATTACGTTTGTCAGCAGCCAGATGTCAGTCAACACAATCAACTGACC
TtCTTTCAAGATTGGAACAATTGGTACCAGAAAAGAGACGTGAAGTTGCT
GAATTCAGAAAAGCTCACAATGATACCAAAATTGGAGAAGTCAATGTCGG
AATGGCCTATGGTGGCATGAGAGGAATCAAAGGCCTTGTCACAGAAACCT
CAGTACTTGACCCAGAAGAGGGTATCAGATTTAGAGGATACAGTATTCCA
GAATGTCAAGAGCTATTACCTCGAGCTGACGGTGGTAACGAGCCCTTGCC
AGAAGGTATCTTCTACTTGTTGTTGACTGGTGAAATTCCAACCAAGGAAC
AAGTTGACGCCATCTCAAAAGAATGGGCAGCCCGCGCCGAGTTGCCACAA
CACGTTGTGATGATGTTGAAGAACTTCCCTGAAGACGTTCACCCAATGAC
GCAATTTGCCACAGCTATTGCCGCATTGAACAAAGACAGCAAGTTTGCCA
AAGCATACTCTGAGGGCGTATCCAAAATGGACTACTGGATGTACGCTTAC
GAAGATTCTGTCGACCTTATCGCCAAACTCCCAGTCATCGCTGCTCTGAT
CTACAGAAACCTCTACAAAGATGGTAAAGTTGCACCCATCAACCCTGACA
AAGATTTTGGAGCCAACTTGGCCGATATGTTGGGCTACGACAACCCTGAT
TTCACAGAATTGATGAGATTGTACTTGGTGATTCACAGCGATCACGAAGG
TGGTAATGTTAGTGCTCACACTACACATTTGGTAGGAAGTGCCCTATCTG
ATCCATACCTTTCCCTTAGTGCTGGTATGTGTGGATTGGCTGGACCTTTA
CACGGCTTGGCTAACCAGGAAGTCTTGGTTTGGTTGGATAAATTAACTAA
AGAAGTCGGATTTGACTTGACCACTGACCAAATGCGAGAATACATCCgtg
aaacattgaaaaaatcgGTTGTACCAGGATACGGCCATGCCGTTCTCCGT
AAGACAGATCCACGATACACATGTCAACGTGAATTCGCTTTGAAACACTT
GCCAAACGACCCATTGTTCAAAGTTGTCGGACAATTGTACGAAGTCGTAC
CTGATGAATTGAAAGCCTTGGGTAAAGTTGCCAACCCATGGCCCAATGTT
GATGCCCACTCCGGTGTCTTGTTACAAtaCTATGGTATGACTGAGATGAA
TTACTACACTGTTTTATTCGGTGTATCAAGAGCCTTGGGAGTTTTACCAT
CGCTGGTTTGGGATCGTGCTTTTGGATTACCCATCGAAAGACCAAAGAGT
ATGAGTACTGAAGGCCTTATGAAGATGACCGGTTATTCGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043395XLOC_043395Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069691-proteinTCONS_00069691-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069691-exon-scaffold_506-1491911889:249526..249995TCONS_00069691-exon-scaffold_506-1491911889:249526..249995Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:249526..249995TCONS_00069691-exon-scaffold_506-1510915933:249526..249995Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:249526..249995TCONS_00069691-exon-scaffold_506-1575043694:249526..249995Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:256239..256298TCONS_00069691-exon-scaffold_506-1491911889:256239..256298Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:256239..256298TCONS_00069691-exon-scaffold_506-1510915933:256239..256298Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:256239..256298TCONS_00069691-exon-scaffold_506-1575043694:256239..256298Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:256780..256881TCONS_00069691-exon-scaffold_506-1491911889:256780..256881Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:256780..256881TCONS_00069691-exon-scaffold_506-1510915933:256780..256881Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:256780..256881TCONS_00069691-exon-scaffold_506-1575043694:256780..256881Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:257418..257483TCONS_00069691-exon-scaffold_506-1491911889:257418..257483Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:257418..257483TCONS_00069691-exon-scaffold_506-1510915933:257418..257483Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:257418..257483TCONS_00069691-exon-scaffold_506-1575043694:257418..257483Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:258057..258098TCONS_00069691-exon-scaffold_506-1491911889:258057..258098Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:258057..258098TCONS_00069691-exon-scaffold_506-1510915933:258057..258098Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:258057..258098TCONS_00069691-exon-scaffold_506-1575043694:258057..258098Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:258346..258624TCONS_00069691-exon-scaffold_506-1491911889:258346..258624Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:258346..258624TCONS_00069691-exon-scaffold_506-1510915933:258346..258624Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:258346..258624TCONS_00069691-exon-scaffold_506-1575043694:258346..258624Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:259126..259452TCONS_00069691-exon-scaffold_506-1491911889:259126..259452Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:259126..259452TCONS_00069691-exon-scaffold_506-1510915933:259126..259452Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:259126..259452TCONS_00069691-exon-scaffold_506-1575043694:259126..259452Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:259634..259732TCONS_00069691-exon-scaffold_506-1491911889:259634..259732Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:259634..259732TCONS_00069691-exon-scaffold_506-1510915933:259634..259732Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:259634..259732TCONS_00069691-exon-scaffold_506-1575043694:259634..259732Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:260606..260815TCONS_00069691-exon-scaffold_506-1491911889:260606..260815Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:260606..260815TCONS_00069691-exon-scaffold_506-1510915933:260606..260815Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:260606..260815TCONS_00069691-exon-scaffold_506-1575043694:260606..260815Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1491911889:261752..262381TCONS_00069691-exon-scaffold_506-1491911889:261752..262381Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1510915933:261752..262381TCONS_00069691-exon-scaffold_506-1510915933:261752..262381Clytia hemisphaericaexon
TCONS_00069691-exon-scaffold_506-1575043694:261752..262381TCONS_00069691-exon-scaffold_506-1575043694:261752..262381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:249526..262381 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
233.784	228.506	59.2826	38.5776	321.279	259.674	381.288	409.286	475.864	500.047	604.289	500.581	525.674	514.011	449.847	522.087	673.407	746.828	386.308	412.077	603.569	654.112	305.044	352.043	675.671	586.614	314.129	370.615	317.156	284.945
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002020Citrate_synthase
IPR010109Citrate_synthase_euk
IPR016142Citrate_synth-like_lrg_a-sub
IPR019810Citrate_synthase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0046912transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0004108citrate (Si)-synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0006101citrate metabolic process
GO:0006099tricarboxylic acid cycle
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006101 citrate metabolic process
biological_process GO:0006099 tricarboxylic acid cycle
molecular_function GO:0004108 citrate (Si)-synthase activity
molecular_function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
Blast
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BLAST of TCONS_00069691 vs. Swiss-Prot (Human)
Match: CISY (Citrate synthase, mitochondrial OS=Homo sapiens GN=CS PE=1 SV=2)

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 297/439 (67.65%), Postives = 354/439 (80.64%), Query Frame = 3 
Query:  495 AARCQSTQSTDLLSRLEQLVPEKRREVAEFRKAHNDTKIGEVNVGMAYGGMRGIKGLVTETSVLDPEEGIRFRGYSIPECQELLPRADGGNEPLPEGIFYLLLTGEIPTKEQVDAISKEWAARAELPQHVVMMLKNFPEDVHPMTQFATAIAALNKDSKFAKAYSEGVSKMDYWMYAYEDSVDLIAKLPVIAALIYRNLYKDGK-VAPINPDKDFGANLADMLGYDNPDFTELMRLYLVIHSDHEGGNVSAHTTHLVGSALSDPYLSLSAGMCGLAGPLHGLANQEVLVWLDKLTKEVGFDLTTDQMREYIRETLKKS-VVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKVVGQLYEVVPDELKALGKVANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLPSLVWDRAFGLPIERPKSMSTEGLMKM 1805
            AAR  S  ST+L   L  L+P+++  +  FR+ H  T +G++ V M YGGMRG+KGLV ETSVLDP+EGIRFRG+SIPECQ+LLP+A GG EPLPEG+F+LL+TG IPT+EQV  +SKEWA RA LP HVV ML NFP ++HPM+Q + A+ ALN +S FA+AY++G+S+  YW   YEDS+DLIAKLP +AA IYRNLY++G  +  I+ + D+  N  +MLGY +  FTEL RLYL IHSDHEGGNVSAHT+HLVGSALSDPYLS +A M GLAGPLHGLANQEVLVWL +L KEVG D++ +++R+YI  TL    VVPGYGHAVLRKTDPRYTCQREFALKHLPNDP+FK+V QLY++VP+ L   GK  NPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVL  L+W RA G P+ERPKSMSTEGLMK 
Sbjct:   22 AARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKIYRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEGLMKF 460
The following BLAST results are available for this feature:
BLAST of TCONS_00069691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CISY0.000e+067.65Citrate synthase, mitochondrial OS=Homo sapiens GN... [more]
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