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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070297 ID=TCONS_00070297|Name=TCONS_00070297|organism=Clytia hemisphaerica|type=transcript|length=2195bpRun BLAST on NCBI protein sequence of TCONS_00070297-protein >TCONS_00070297-protein ID=TCONS_00070297-protein|Name=TCONS_00070297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp MDVGELLKYQPPTAGNKRTRAPAAFEKRPRSKKIKESEIDEGGGYQFKKIRun BLAST on NCBI transcript from alignment at scaffold_52:108243..137544+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070297 ID=TCONS_00070297|Name=TCONS_00070297|organism=Clytia hemisphaerica|type=transcript|length=29302bp|location=Sequence derived from alignment at scaffold_52:108243..137544+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_52:108243..137544+ >TCONS_00070297 ID=TCONS_00070297|Name=TCONS_00070297|organism=Clytia hemisphaerica|type=CDS|length=1779bp|location=Sequence derived from alignment at scaffold_52:108243..137544+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070297 vs. Swiss-Prot (Human)
Match: CTBL1 (Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1) HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0 Identity = 321/598 (53.68%), Postives = 427/598 (71.40%), Query Frame = 2
Query: 86 MDVGELLKYQPPTAGNKRTRAPAAFEKRPRSKKIKESEIDEGGGYQFKKILKKPDNTHAQERRPQVEKEVAQHRQETIQRRGDGPITEDDKEKLLALVENDDEGEA-----VDEATIKKHILSFEKKVTKNQEMRIKFVDQPNRFMESELELHEEIQKLHVLATVPEYYDIFVRLNSVATCLNLMNHENSDISIGIVDLLQELTDIDTLNESEDEANILVDALLKGQLVTVLLQNLHRLDERVKEDADGVHNTLAIIENIAEFRPEVCVTAGQQGXXXXXXXXXXXXM-FDSNKLYSSEILAILLQNTEENRQLIKESNGVDPLLQALATYKGHNPNNQEEIEYMENLFNCLCSCLLHPPNKDLFLKGEGLQLMILMLREKKMARPSALKVLAYAMTGQEGAENCHKFVEILGLRSVFPLFMKPPKRNKKTGNSKEECEEHACSIIASLYRNLTSNNRTRLTQKFVEDDHVKIDRLMEMYFKYQRRVQDADAKIXXXXXXXXXXXXXIDDTMEDEFYLKRLDAGLFILQLIVCIMLENCCSGVSSIKQRVLKLLNQHGGSTKRIKQVMREYAGHIGDSTETESAENERRRLLSLIDRF 1861
MDVGELL YQP N+ T KRPR + +E +K+ +K T + R + E V + +DDK++LL +++ D E E +DE+++KK IL+FEK+ KNQE+RIKF D P +FMESEL+L++ IQ++HV+AT+P+ Y + V LN+V + L L+ H+N+D+SI +VDLLQELTDIDTL+ESE+ A +L+DAL+ GQ+V +L+QNL RLDE VKE+ADGVHNTLAI+EN+AEFRPE+C QQGLL WLLKRLK KM FD+NKLY SE+LAILLQ+ +ENR+L+ E +G+D LLQ L+ +K HNP+ EE E MENLF+ LCSCL+ N++ FLKGEGLQLM LMLREKK++R SALKVL +AM G EG +NCHKFV+ILGLR++FPLFMK P++ KK G +++E EEH CSI+ASL RNL RTRL KF E+D K+DRLME++FKY +Q AD KIE E+ + +GE ID+ E+EFYL+RLDAGLF+LQ I IM E C + V I+QRV ++LN G S K ++ +++EYA +IGD E ENE++R+L L++ F
Sbjct: 1 MDVGELLSYQP----NRGT-------KRPRDDEEEE-----------QKMRRKQTGTRERGRYREEEMTVVEE-------------ADDDKKRLLQIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDIIQEMHVVATMPDLYHLLVELNAVQSLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEGAEVLIDALVDGQVVALLVQNLERLDESVKEEADGVHNTLAIVENMAEFRPEMCTEGAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPRKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLGAMQVADKKIEGEKHDMVRRGEIIDNDTEEEFYLRRLDAGLFVLQHICYIMAEICNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGDGRSPEFRENEQKRILGLLENF 563 The following BLAST results are available for this feature:
BLAST of TCONS_00070297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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