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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070596 ID=TCONS_00070596|Name=TCONS_00070596|organism=Clytia hemisphaerica|type=transcript|length=2694bpRun BLAST on NCBI protein sequence of TCONS_00070596-protein >TCONS_00070596-protein ID=TCONS_00070596-protein|Name=TCONS_00070596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp MSDENEDIIVINPDSTAGSTEFHFDPPSFLIGNADCSEKTTNNIIKNEKYRun BLAST on NCBI transcript from alignment at scaffold_57:6713..10289+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070596 ID=TCONS_00070596|Name=TCONS_00070596|organism=Clytia hemisphaerica|type=transcript|length=3577bp|location=Sequence derived from alignment at scaffold_57:6713..10289+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:6713..10289+ >TCONS_00070596 ID=TCONS_00070596|Name=TCONS_00070596|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_57:6713..10289+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070596 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 3.705e-55 Identity = 113/250 (45.20%), Postives = 148/250 (59.20%), Query Frame = 1
Query: 478 EETFTCDVCDKSFPSRSKLKRHGYTHTRVKRFVCSICHKTFNQSYHLNVHMNSHTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHTDVKSYGCGVCGKTFARKCNLTQHLGTHXXXXXXXXXXXXXXXAQKAHLERHINNHKGIKPFKCDICDKMFAVKADISIHLKTHADVKPHGCGVCGKTFSQKSNLTHHLTTHENEKKFECKECGKRYRWKRDFEKHMFTH 1227
E F C VC K F +S L H + HTR K F C+ C K F+Q ++ H N+HTG K +EC ECGK F QK NL H H G KPF+C C K + K +L RH +THT K + C CGKTF+ K NLT+H H EK F+C ECG F QK +L +H N H G KP++C+ C K F+ + + +H++ H+ KP+ C VCGK FSQ S+LT H+ +H EK + C ECGK + H+ H
Sbjct: 13 ENPFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIH 262 HSP 2 Score: 185.652 bits (470), Expect = 3.753e-52 Identity = 107/250 (42.80%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 478 EETFTCDVCDKSFPSRSKLKRHGYTHTRVKRFVCSICHKTFNQSYHLNVHMNSHTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHTDVKSYGCGVCGKTFARKCNLTQHLGTHXXXXXXXXXXXXXXXAQKAHLERHINNHKGIKPFKCDICDKMFAVKADISIHLKTHADVKPHGCGVCGKTFSQKSNLTHHLTTHENEKKFECKECGKRYRWKRDFEKHMFTH 1227
E+ F C+ C K+F + + +H THT K F C+ C K+F+Q +L H HTG KP+ECK+CGK F QK NL RH TH G KPF C C KT++ K +L H K H K + C CG F +K L +H H EK +EC ECGK F+Q+ L H+ H G KP++C++C K F+ + +++H+++H KP+GC CGK FSQ S L HL H +K ++C ECGK + K +H H
Sbjct: 41 EKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIH 290 HSP 3 Score: 150.984 bits (380), Expect = 8.784e-40 Identity = 85/218 (38.99%), Postives = 125/218 (57.34%), Query Frame = 1
Query: 1696 KSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHVPQNNSAKHEAGDFGSRVTMVDF 2349
K ++C+ CG+ F +K + +H THTG K F+C+ CGK F++ NLL H IHTG KP++C+ C AF Q ++L H +H+ KPF C+ECGK F+ K +L H++ H G KPF+C ECG F K L KH IH KP+ C+ CGK F ++ L H+R H+ + C +C F +S HV++H + +E G S+ + +
Sbjct: 42 KPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEK-IHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRI-HSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLAL 257 HSP 4 Score: 143.28 bits (360), Expect = 3.334e-37 Identity = 82/196 (41.84%), Postives = 106/196 (54.08%), Query Frame = 1
Query: 1696 KSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 2283
K ++C CG+ F++K + +H THTG KPF C CGK F+ NL H IH G KP+KC C AF Q +L H H+ KP+EC ECGK F+Q+ L H R H G KP+EC CGK F+ L H+ H KP+ C+ CGK F + L HLR H K + C C F K+ + +H K H
Sbjct: 98 KPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRI-HSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRI-HTGKKPYQCSECGKAFSQKSHHIRHQKIHT 291 HSP 5 Score: 142.124 bits (357), Expect = 8.203e-37 Identity = 83/208 (39.90%), Postives = 117/208 (56.25%), Query Frame = 1
Query: 1657 NQQAVQNNTNRKGKSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTH 2280
+QQ + + N + C VCG+ F K + +H HT KPF+C+ CGK F++ + +++H HTG K ++C C +FSQ +L +H H+ KPFEC++CGK F QK +L RH R H G KPF CKECGK F+ K +L +H IH KP C CG F +K +L +H H + + C C F +TS HV+ H
Sbjct: 5 SQQRIYSGEN----PFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQR-THTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNI-HTGEKPYECNECGKAFSQRTSLIVHVRIH 206 HSP 6 Score: 129.798 bits (325), Expect = 1.830e-32 Identity = 84/197 (42.64%), Postives = 109/197 (55.33%), Query Frame = 1
Query: 637 HTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHTDVKSYGCGVCGKTFARKCNLTQHLGTHXXXXXXXXXXXXXXXAQKAHLERHINNHKGIKPFKCDICDKMFAVKADISIHLKTHADVKPHGCGVCGKTFSQKSNLTHHLTTHENEKKFECKECGKRYRWKRDFEKHMFTH 1227
++G P+ CK CGK F K NL H H KPF+C+ C K ++ K + +H THT K + C CGK+F++K NL H H EK FECK+CGK F QK++L RH H G KPF C C K F+ K++++ H K H KP C CG F QK L H H EK +EC ECGK + + H+ H
Sbjct: 10 YSGENPFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIH 206 HSP 7 Score: 103.99 bits (258), Expect = 8.540e-24 Identity = 66/171 (38.60%), Postives = 92/171 (53.80%), Query Frame = 1
Query: 1834 LRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHVPQNNSAKHEAG-DFGSRVTMV 2343
L I++G P+ C++C FS ++L H H+ KPFEC ECGK F+QK + +H +N H G K FEC ECGK F+ K +L H IH KP C CGK F +K +L +H RT H + F C C F K++ +H K H+ + E G FG + ++
Sbjct: 4 LSQQRIYSGENPFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKH-QNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRT-HTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLI 172 HSP 8 Score: 92.8189 bits (229), Expect = 3.638e-20 Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 478 EETFTCDVCDKSFPSRSKLKRHGYTHTRVKRFVCSICHKTFNQSYHLNVHMNSHTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHT 810
E+ + C+ C K+F R+ L H H+ K + C++C K F+QS L VH+ SHTG KPY C ECGK F Q L H H G KP++C C K ++ K RH K HT
Sbjct: 181 EKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIHT 291 The following BLAST results are available for this feature:
BLAST of TCONS_00070596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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