TCONS_00071056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071056
Unique NameTCONS_00071056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071056 ID=TCONS_00071056|Name=TCONS_00071056|organism=Clytia hemisphaerica|type=transcript|length=2853bp
TTAAAAGGTAACAATAAAAATGGAAACAGGAacagaagaatatttttggg
tGCAATGCGAGTATCCACAATGTATGAAATGGAGAAAGCTGCTTTCTGGT
GTGCAAGATGAGATAAAAAATATCCAATGGTATTGTCACATGAACCCTGA
TAAAGCTTACAGTTTCTGCGATGCTCCTCAACAGAAAATGCAAGTCAAGA
AAGGGGAAACTGTCGTGTTTAGTGAATTGGAGCTTGGATCTTTGGTCATG
GCGAAAATGGCTGGTTATCCTAGttGGCCAGCAATCATAACAAAAGATCC
AGCAGAACCTGAGGGTAGTCATATAATTCGCTACCAGGATGGAACAAATG
ATCCTAAATATTATCATGTGGAATTTCTCGGTCAAATGCATACCCATGCA
TGGATCTCTGCCAGACAAGTTCAGATATACAATACGTCCTCTGGTATCCT
TGTGTTCGATGAACGggcaatgaaaaagaagaaattgaaagaagaatttt
tgaaatcaaaacaagaagCTTCAacttttatgaatttttcaCCAGAAGAA
AGATTGAAGAGGATTATTTTTCAATGGAAGGAACCTCCTAAACCTGTCAG
GGACATTGGCACTGCAGGGCCAAAActaaaagtgaaatttccagGGCCTT
CTAAAAGGAGGGGAAGAAAGCCCAAAGAAAAACCATCACATGAAGATGAT
CAAGAAGTACCGACACTCGATAACCAAAACATTGTACAACAACACGATTT
AAGTCAATTCGAAACTAGAATGATGAATATTAATGGAACATTATGTCCAG
TCTTAGTTCCGCAAAGTACTTCCAGTTTCCAAAATTACCAATCACTTCCA
CAAACTCCAAGCTGGAACATTTGGGGACAAGCAGCTTCCAAAAATCCACC
AGCCTCTCCTTATAATGTGTTCGATTTCAACAATAATGGCAACACTGCCC
CACAAAGACCATCAACTGATCAGAAAAGTTTACAAAACGCAATGAGGGTT
AAAAGACTACAAAGCCCAATGGCAGCTGCCAATAGATACAAAAGTGTTGT
CCCTGTAAATAGATCAAAACCAATCTTAAAGAAACGTACCAAAGAGTCAG
TTCCAAAGAAGAAAACTAAGCAAGAGGCAAAAGAGGAAGGTTCAGCTCAA
ATAACTACATTTGAAAATGAGGAGAGTTTCTGGAAAGAATTCAAACCATT
TTGGGAAGATTGTATAAAGAgaaatataaatgaaaagaaaatgagTTATG
TTGTTAAGTGGCATGGGAAGAAAATCAGCCTGTTCAAGTTTTATCAAACG
GTTCAACATGCAGGCGGCTATAAAGCGGCGACCAGTCATTGGAAGATTTG
GACAAATATTTGTTGCGAAGTCATCGGAAAGATGTTTGTAGATAATACGT
TTGCTACACTCAAGAAGGCTTACAGAAACATCTTGCTCCAGTTCGAACAA
GAAAGAAAGTaTCCATTGCTAGTCAAAAAGAGACAAGAGGAAAAGGCTAA
AGCAGCAGAATTGGAGCAGTTGGCGAGGACCCAATCCACTTTACCAGGAG
GTGGGCTAGCTATTGTACCACGACAAAGCCCTGTCTATCTGCCTGAGGAT
TTGGGATTACCGCAATCTTTGAATGTGTTGGATTCTTGTGAAGATGGATC
CTTACAACTACCAGCATTGAATAGCACTGTCGGTGACATCTTGAAAGGAC
TGGCACCCTCCACACAAAAGAAATCCAAACCAAGTTTAGTTGACCTTCCA
AGTTCAAACCCAGATTCACCAATGTTTTGCTTTTCTCAAGAATCGCGAGC
CTCTTCTTCGCCAACCTTACCTTCGGAGATCGGCATGGATGCGGCCCTCC
TTCAAATCAACACATTAGAAGGTGAACTATCAACTCTGGGAGGCCTTGAT
GATGTCGGACAAGATCAATCTCTGCCCGAAGATGTTTTCTTAGataacAA
GTCAACGCCCGCTTTAGAAGAACAAAACGAACTCAAAGCATATCAACCAG
TGAGTGGTTCATCAACACAAGACTCTGTTGAATTTGATGCAGTGATGGGC
GAACTAACTGATCTTGAAGACACTCTACTAGACATGGCAGGAGATCTTTT
GGGAGGCACAAAGCTCCCCAGTTGAGGGAGAATTGCGAGCTACTGGAGTA
AGTTTTGGAGGGAGTTGGGAGTTTTGTGTATCTATATACCAGTGcgatca
aaaagatttttaaagctAACTTTTTCAAATGAGGCTATGCAGCATTTATT
ACTCAACACTTTAGTACCGAGGAACTGGACTGAGAGTAAAGCTTCAGAGG
GTAAGTGTCAGTTTGAAGATAACCATTTTTTAGGCTCGATAATAGTCAGA
ACCTGAAATATTGAAGCCTTTGAgcagaatcttttttttttgtcttttac
gCGCCCGATTTTGAGTAGTGAAAATCTTCtgttacaagttttcaaaagtC
ACAAGTTTGCAGGATTTCTATTGTTGTTATATGTATGTATTACCAGACGT
GAATAGTGATGGTATAGTTTTTTAGCTTTGTAGATTTTAATTAATAGAGT
Cttcagattttttaaatttgatagattttccagtatttttattagttttt
cagaatatttaagAGAATTGAGTTGTAAATTGTTAAGAATATGAATTTTA
CCAGTAGTGTTTGCGTTACTTCTGATTAAATTGATcactgatatttttga
aaactcaccCTTGCCCTTATTACCTCGATCAGTTTGAGTGTGAACTTTTC
CCTTGATTCTTTACAACTCCTTTATTCACTATCTTACCATCTCCTTCTAA
CTACCCACTTTCAACTTTCAGTTTTTACAGAACCCAGTCGTTTGagatta
aag
Run BLAST on NCBI

protein sequence of TCONS_00071056-protein

>TCONS_00071056-protein ID=TCONS_00071056-protein|Name=TCONS_00071056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp
METGTEEYFWVQCEYPQCMKWRKLLSGVQDEIKNIQWYCHMNPDKAYSFC
DAPQQKMQVKKGETVVFSELELGSLVMAKMAGYPSWPAIITKDPAEPEGS
HIIRYQDGTNDPKYYHVEFLGQMHTHAWISARQVQIYNTSSGILVFDERA
MKKKKLKEEFLKSKQEASTFMNFSPEERLKRIIFQWKEPPKPVRDIGTAG
PKLKVKFPGPSKRRGRKPKEKPSHEDDQEVPTLDNQNIVQQHDLSQFETR
MMNINGTLCPVLVPQSTSSFQNYQSLPQTPSWNIWGQAASKNPPASPYNV
FDFNNNGNTAPQRPSTDQKSLQNAMRVKRLQSPMAAANRYKSVVPVNRSK
PILKKRTKESVPKKKTKQEAKEEGSAQITTFENEESFWKEFKPFWEDCIK
RNINEKKMSYVVKWHGKKISLFKFYQTVQHAGGYKAATSHWKIWTNICCE
VIGKMFVDNTFATLKKAYRNILLQFEQERKYPLLVKKRQEEKAKAAELEQ
LARTQSTLPGGGLAIVPRQSPVYLPEDLGLPQSLNVLDSCEDGSLQLPAL
NSTVGDILKGLAPSTQKKSKPSLVDLPSSNPDSPMFCFSQESRASSSPTL
PSEIGMDAALLQINTLEGELSTLGGLDDVGQDQSLPEDVFLDNKSTPALE
EQNELKAYQPVSGSSTQDSVEFDAVMGELTDLEDTLLDMAGDLLGGTKLP
S
Run BLAST on NCBI

transcript from alignment at scaffold_58:1350178..1357172-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071056 ID=TCONS_00071056|Name=TCONS_00071056|organism=Clytia hemisphaerica|type=transcript|length=6995bp|location=Sequence derived from alignment at scaffold_58:1350178..1357172- (Clytia hemisphaerica)
TTAAAAGGTAACAATAAAAATGGAAACAGGAACAGAAGAATATTTTTGGG
TGCAATGCGAGTATCCACAATGTATGAAATGGAGAAAGCTGCTTTCTGGT
GTGCAAGATGAGATAAAAAATATCCAATGGTATTGTCACATGAACCCTGA
TAAAGCTTACAGTTTCTGCGATGCTCCTCAACAGAAAATGCAAGTCAAGA
AAGGGGAAACTGTCGTGTTTAGTGAATTGGAGCTTGGATCTTTGGTCATG
GCGAAAATGGCTGGTTATCCTAGGTATGGCGATTCTGATTTTAGGGCTAT
TCCAAGAAATTGTCAACCACAATTGGAGTTTATAAGCGATTGAAACGCCT
CGGACCGGGTTGCAGTGCTCCTTACTGGCTATCCAGTCAAAAATAAGCGT
GAAATAATGCACCCCTTCCTCTTGAATGGCCGCTTAGAAATTTTTATTTT
CAAATGGTTGTGAATCGTGTCATCAAAATATAGTTTTGGTAAAATTTGAT
CAAACTTAAATTTTTGTCTTTTTTTTTATTAAGTTGGCCAGCAATCATAA
CAAAAGATCCAGCAGAACCTGAGGGTAGTCATATAATTCGCTACCAGGAT
GGAACAAATGATCCTAAATATTATCATGTGGAATTTCTCGGTCAAATGCA
TACCCATGCATGGATCTCTGCCAGACAAGTTCAGATATACAATACGTCCT
CTGGTATCCTTGTGTTCGATGAACGGGCAATGAAAAAGAAGAAATTGAAA
GAAGAATTTTTGAAATCAAAACAAGAAGCTTCAACTTTTATGAATTTTTC
ACCAGAAGAAAGATTGAAGAGGATTATTTTTCAATGGAAGGAACCTCCTA
AACCTGTCAGGTAAGTTTCCCCTGACGAAGACACATGTTTTCAAAAGTCT
TCTATGTTTTTGCAACATCCTTATTTTGAAATGTCGAATGGGTGATATTT
TCAAGTTTGATATCTGTTTTAGGGACATTGGCACTGCAGGGCCAAAACTA
AAAGTGAAATTTCCAGGGCCTTCTAAAAGGAGGGGAAGAAAGCCCAAAGA
AAAACCATCACATGAAGATGATCAAGAAGTACCGACACTCGATAACCAAA
ACATTGTACAACAACACGATTTAAGTCAATTCGAAACTGTAAGCTTATAT
AATTTCAACTGAAATCCGACGTTATCTGACGAAGTTTTATATTATTTCTG
ATTCATTGATTTGGACTTTGGGTTTTTCATAAAAATCAGCTTAAACCCTT
TACTTTATTTTTGCATTAGAAAAATATGACAAACGAACATATAATAATCA
GAGGGTCACGAAATTAATATAACAACAGTTGCAGTTTGGGACCTTTTAAA
TGTAACCAATAATCCTTTTCAATTTAATCAAGGTATTTTTCCACTGTTTA
CTTTTACATTTCACTTTCAATCAATTTTTTCCTTGCAGAGAATGATGAAT
ATTAATGGAACATTATGTCCAGTCTTAGTTCCGCAAAGTACTTCCAGTTT
CCAAAATTACCAATCACTTCCACAAACTCCAAGCTGGAACATTTGGGGAC
AAGCAGCTTCCAAAAATCCACCAGCCTCTCCTTATAATGTGTTCGATTTC
AACAATAATGGCAACACTGCCCCACAAAGACCATCAACTGATCAGAAAAG
TTTACAAAACGCAATGAGGGTTAAAAGACTACAAAGCCCAATGGCAGCTG
CCAATAGATACAAAAGTGTTGTCCCTGTAAATAGATCAAAACCAATCTTA
AAGAAACGTACCAAAGAGTCAGTTCCAAAGAAGAAAACTAAGCAAGAGGC
AAAAGAGGAAGGTTCAGCTCAAATAACTACATTTGAAAATGTAAGGAATC
ATGTTATTGTTTTCTTTGTATAAAATGAAACCTTTCATTTTGTTCATTTT
AATTTGATTCCCATTGGAGAAGGCCAATTGGGGGATCGTTATTCTCCTAG
GAAAAGGAATCTTTTCACAGTTCAAGATTGTCCAATTCATACCAGCAAAG
TGAACAAGTTGCGAGGATTAAAAACTTAAAGTAATTGTGAAATTAACCTT
TAAATCATTCAGTACATCTAACGATTATATAAACATGAAGCTTTAAGTAA
TGTACTTTTAGATGTTTTTTTAGACAAATATTTTAAGTTAGATTAAAATT
AACTTTAATTCTTTTTCGTCATATCATTTCCAGGAGGAGAGTTTCTGGAA
AGAATTCAAACCATTTTGGGAAGATTGTATAAAGAGAAATATAAATGAAA
AGAAAATGAGTTATGTTGTTAAGTGGCATGGGAAGAAAATCAGCCTGTTC
AAGTTTTATCAAACGGTTCAACATGCAGGCGGCTATAAAGCGGTGCGTAT
GATACTACAGTTGACTCTCTCTAATTCGATCTTCAAGGGATCAAAGTTTT
ATTCGAATTAGAGAAAGATTCAAATTACAGGGAGAGTAATTTTTAAGCCA
CCTTTAAGCCGATGGGGACCAATATTTTGGTTCGAATTAGAGAGAGTTGA
CTTTACTGGACTGTACTCTATCGAAAAAGCATTTTGCTGTACTTTTATCA
AAATGCCATTAAAAAGAAAGTCTTTACAATAGAATGCTGGCTGAATGTCG
TCAGAACATCGCACTTATCTCAAGTCAGCGTATATCTTCACTGTATTGTT
TTTGTCATTATGGAGACAGATATCTGGATTGAGACTATGTTCACACATAA
GGCTTTCATATCGGTTCAAAACGGATTAGAAGTGACGTCAAGTCTGTATT
TGGCCAATAGAACAGTTTCATTTCATCTCAGAACGATGCGAAACCAAATT
TTGTGAACCTGATCCTATTTAAGGTCTAGAAATCCTTTTTTCATCTGAAG
CCATATAATTTTTCATGCTTCGTTCGTATTCTCAGTGTAATAAGTATTTT
ATCTTAATTAAAAGCTAATTGTATTTTTTGTTCCAAAGCTTATTGACTTT
AATAAGAAATTAGTAATCAATCAAATCAAATTAGTAGTAATCAATAATTT
CAGGCGACCAGTCATTGGAAGATTTGGACAAATATTTGTTGCGAAGTCAT
CGGAAAGATGTTTGTAGATAATACGTTTGCTACACTCAAGAAGGCTTACA
GAAAGTAAAGTTCATTTCCTTGCTTCTTTCTCTCAGTTTGTTAGTCTGTT
GAAAGAGCTATTCAGAATTTCAGGGCGCTTGAAAAAATAGTGCTAGGCTG
TTATATAGTTTTATCGAGGATTGTTGAGTACATATAGAACATCATAGATT
AGAATAGGATTCAAGACAAGACTTCTCCGTAACCAATCCCAATTTTTTTA
TAGCATCTTGCTCCAGTTCGAACAAGAAAGAAAGTGTAAGATCAAATTTT
TTTCATTTGCGAACCTAACCTTCCCCCACTACAAAACAAGTGGAATGACC
TACCATACGTGCGGCCTTTAAGGGTTTATTTTCCAAGCTTCCCAAAGTGC
ACTGTAAGGGTTGAAATCAGCAAAGATGAGAAAAATTGCACTCTAAGGGT
GTAAGATTTCGACAAGCTGACAATATTTGGCCTGAAAATGGTCAAAATTT
ATAAAAAAATGCACCAAATTTAGAAAAAATTCTTCTGCATTGTAAGGGTT
CGGTTTCAAAGGCCTAATTTTGGGCCGCCCGTATGGTCGTTTTTGAATCG
AGGGCCCCCTCCCCCGGGGGAATGGAAAATTAAATAACGCTTTTAGAATG
AACGAGCCTCTGACGTTGAAGTTCAGAATACGTCATCGGAAAAAAAGGTT
ATTGATTTTTTCTTTCGAGCTCGATTATGATTATTTTTAAGACACCGACC
TTTTTATTTTACCTGTAACATCCAAAAGAGAAAAAATGTCTATCTGCAAG
CAAAGAATTCGAGTGGTTGGCGGGATTCCTGTCTAATAAATGGAATTTTT
GTTTTGAATAGATCCATTGCTAGTCAAAAAGAGACAAGAGGAAAAGGCTA
AAGCAGCAGAATTGGAGCAGTTGGCGAGGACCCAATCCACTTTACCAGGA
GGTGGGCTAGCTATTGTACCACGACAAAGCCCTGTCTATCTGCCTGAGGA
TTTGGGATTACCGCAATCTTTGAATGTGTTGGATTCTTGTGAAGATGGAT
CCTTACAACTACCAGCATTGAATAGCACTGTCGGTGACATCTTGAAAGGA
CTGGCACCCTCCACACAAAAGAAATCCAAACCAAGTATGTATGATTCCTT
ACAAATTTCAGAGTGTTTTGCTCCAAATTCCTTCGTATAAGTTAATGAGA
ATATAGAATTTTGATCAGAATGCGAATTTAGAAGTAACTCTTATCACAAT
GAAAAAGATTTTCTGAGTGCTTATCAATCAACTTCAAAACAACATATTCT
CTTTATCATTTAGGTTTAGTTGACCTTCCAAGTTCAAACCCAGATTCACC
AATGTTTTGCTTTTCTCAAGGTAAGAAGTTCACCCTCTTTGATTAAATCA
CTGGACAAAGATATAAGATGCTCTTTTGGAGTACAATTGACGATTGGCCA
CGAGTAATAAGGAGACGGAGAAAGTTGTACCCATAGTACGAGAATCAAAT
TAAAATTTTATCCTTGTTACGAGTGATTTACCGTTCATTGTACGAGTTTC
GACCGACATGTGCGATTTCTGAATAATTGTCACCTTTTTCCATTTACACG
CAAAGGTGCTCTCAAAATCTTTCTCGATCAATCAAATTGGACGTTGATTA
CTGAGATAAACTTGTGTGGAATTTCTGTAAACATTTCGCTGAATTAGGAA
TTGAATTAGGATGAGGATGAAATGTTCATGTTTATTGACTTTTAGAATCG
CGAGCCTCTTCTTCGCCAACCTTACCTTCGGAGATCGGCATGGATGCGGC
CCTCCTTCAAATCAACACATTAGAAGGTGAACTATCAACTCTGGGAGGCC
TTGATGATGTCGGACAAGATCAATCTCTGCCCGAAGATGTTTTCTTAGGT
GAGGCTGTTTTCAAATGAGCCTCTTTTTATTTTGAATTATTTTTCACCAC
AGATTAAATGGCTATCGATCTTCGCAGTTTTCTTTTCATACCGCGCGTCT
GGTCACTTGTTCATTTCACGATCGATTAACTATTAGCTAGTTAGTTCATA
TAAATATTTGGGGATACGTAATTAAAATGTTTCACATTAACAATATTTTT
TTAGATAACAAGTCAACGCCCGCTTTAGAAGAACAAAACGAACTCAAGTA
AGCGATTTCATTCAAGCTTTCAAAACTGATATTTTCGATTCTTTCAGTAA
GCTTTGATCATTTCAGGTATCAGATTTGAATTCTTTTTAAGTGCGAAGTA
TGACAGTTTCATTTCAAATCAGCTGCCCTTAGTACCTATTTTAGTATAAA
CTTGATGGATTTCAAATTGGACAACGTAGCTTTTTTAACGTTCTTCAGGT
ATTGGTTTAAAAGAGTTTTTTAAAAATCGGACACTTTTAACAGCCGGACA
CTTTCTCAATAGAGCATATCAACCAGTGAGTGGTTCATCAACACAAGACT
CTGTTGAATTTGATGCAGTGATGGGCGAACTAACTGATCTTGAAGGTATC
CTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCA
GTATCCTCAAGTATGACACTTTTCAAGGTAGTGAAAGGTCTTCCAGTCTT
TCTCTTCGAGTCGGGTGACCACATCAATAGCTGCGAGGCGGGCTCTTCTC
GACGTGCTACGTGACCGGCGAGAGCAAGTCGACGTTTTCGTATTGTAACT
CTCGTATTGACACTTTCTCAATAGAGCATATCAACCAGTGAGTGGTTCAT
CAACACAAGACTCTGTTGAATTTGATGCAGTGATGGGCGAACTAACTGAT
CTTGAAGGTATCCTTATATAACACAATCATTACAGTTTCAAATTTTTTTC
TTCCTTTTTTGCTTGAGGATCTGAAAGTGTTCATTCTTTAACAGAGTGAC
TTTAATAATGCTTAATCCTTTCAGTTCCAGAGCTTTGAACATTTTGCGTC
AGCGCATAGTCTCTCGCTAGAATATTATATAGTAAAAGACATCGGTTAAG
GGGTAAAGGCGCCCGCAAACCAACCAAAATTTCATGCTCTTTCATATAGT
AGCTACGAGAGCTCCGGAGATATAGCCCTATGATGCTGGGTCCGCGGGTC
TCCGGGTCTCCGGGCCTGAATGGGTTAAATTCTTAATCTTATTTCTTGCT
TTTGCTTTCAGACACTCTACTAGACATGGCAGGAGATCTTTTGGGAGGCA
CAAAGCTCCCCAGTTGAGGGAGAATTGCGAGCTACTGGAGTAAGTTTTGG
AGGGAGTTGGGAGTTTTGTGTATCTATATACCAGTGCGATCAAAAAGATT
TTTAAAGCTAACTTTTTCAAATGAGGCTATGCAGCATTTATTACTCAACA
CTTTAGTACCGAGGAACTGGACTGAGAGTAAAGCTTCAGAGGGTAAGTGT
CAGTTTGAAGATAACCATTTTTTAGGCTCGATAATAGTCAGAACCTGAAA
TATTGAAGCCTTTGAGCAGAATCTTTTTTTTTTGTCTTTTACGCGCCCGA
TTTTGAGTAGTGAAAATCTTCTGTTACAAGTTTTCAAAAGTCACAAGTTT
GCAGGATTTCTATTGTTGTTATATGTATGTATTACCAGACGTGAATAGTG
ATGGTATAGTTTTTTAGCTTTGTAGATTTTAATTAATAGAGTCTTCAGAT
TTTTTAAATTTGATAGATTTTCCAGTATTTTTATTAGTTTTTCAGAATAT
TTAAGAGAATTGAGTTGTAAATTGTTAAGAATATGAATTTTACCAGTAGT
GTTTGCGTTACTTCTGATTAAATTGATCACTGATATTTTTGAAAACTCAC
CCTTGCCCTTATTACCTCGATCAGTTTGAGTGTGAACTTTTCCCTTGATT
CTTTACAACTCCTTTATTCACTATCTTACCATCTCCTTCTAACTACCCAC
TTTCAACTTTCAGTTTTTACAGAACCCAGTCGTTTGAGATTAAAG

Coding sequence (CDS) from alignment at scaffold_58:1350178..1357172-

>TCONS_00071056 ID=TCONS_00071056|Name=TCONS_00071056|organism=Clytia hemisphaerica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_58:1350178..1357172- (Clytia hemisphaerica)
ATGGAAACAGGAACAGAAGAATATTTTTGGGTGCAATGCGAGTATCCACA
ATGTATGAAATGGAGAAAGCTGCTTTCTGGTGTGCAAGATGAGATAAAAA
ATATCCAATGGTATTGTCACATGAACCCTGATAAAGCTTACAGTTTCTGC
GATGCTCCTCAACAGAAAATGCAAGTCAAGAAAGGGGAAACTGTCGTGTT
TAGTGAATTGGAGCTTGGATCTTTGGTCATGGCGAAAATGGCTGGTTATC
CTAGTTGGCCAGCAATCATAACAAAAGATCCAGCAGAACCTGAGGGTAGT
CATATAATTCGCTACCAGGATGGAACAAATGATCCTAAATATTATCATGT
GGAATTTCTCGGTCAAATGCATACCCATGCATGGATCTCTGCCAGACAAG
TTCAGATATACAATACGTCCTCTGGTATCCTTGTGTTCGATGAACGGGCA
ATGAAAAAGAAGAAATTGAAAGAAGAATTTTTGAAATCAAAACAAGAAGC
TTCAACTTTTATGAATTTTTCACCAGAAGAAAGATTGAAGAGGATTATTT
TTCAATGGAAGGAACCTCCTAAACCTGTCAGGGACATTGGCACTGCAGGG
CCAAAACTAAAAGTGAAATTTCCAGGGCCTTCTAAAAGGAGGGGAAGAAA
GCCCAAAGAAAAACCATCACATGAAGATGATCAAGAAGTACCGACACTCG
ATAACCAAAACATTGTACAACAACACGATTTAAGTCAATTCGAAACTAGA
ATGATGAATATTAATGGAACATTATGTCCAGTCTTAGTTCCGCAAAGTAC
TTCCAGTTTCCAAAATTACCAATCACTTCCACAAACTCCAAGCTGGAACA
TTTGGGGACAAGCAGCTTCCAAAAATCCACCAGCCTCTCCTTATAATGTG
TTCGATTTCAACAATAATGGCAACACTGCCCCACAAAGACCATCAACTGA
TCAGAAAAGTTTACAAAACGCAATGAGGGTTAAAAGACTACAAAGCCCAA
TGGCAGCTGCCAATAGATACAAAAGTGTTGTCCCTGTAAATAGATCAAAA
CCAATCTTAAAGAAACGTACCAAAGAGTCAGTTCCAAAGAAGAAAACTAA
GCAAGAGGCAAAAGAGGAAGGTTCAGCTCAAATAACTACATTTGAAAATG
AGGAGAGTTTCTGGAAAGAATTCAAACCATTTTGGGAAGATTGTATAAAG
AGAAATATAAATGAAAAGAAAATGAGTTATGTTGTTAAGTGGCATGGGAA
GAAAATCAGCCTGTTCAAGTTTTATCAAACGGTTCAACATGCAGGCGGCT
ATAAAGCGGCGACCAGTCATTGGAAGATTTGGACAAATATTTGTTGCGAA
GTCATCGGAAAGATGTTTGTAGATAATACGTTTGCTACACTCAAGAAGGC
TTACAGAAACATCTTGCTCCAGTTCGAACAAGAAAGAAAGTATCCATTGC
TAGTCAAAAAGAGACAAGAGGAAAAGGCTAAAGCAGCAGAATTGGAGCAG
TTGGCGAGGACCCAATCCACTTTACCAGGAGGTGGGCTAGCTATTGTACC
ACGACAAAGCCCTGTCTATCTGCCTGAGGATTTGGGATTACCGCAATCTT
TGAATGTGTTGGATTCTTGTGAAGATGGATCCTTACAACTACCAGCATTG
AATAGCACTGTCGGTGACATCTTGAAAGGACTGGCACCCTCCACACAAAA
GAAATCCAAACCAAGTTTAGTTGACCTTCCAAGTTCAAACCCAGATTCAC
CAATGTTTTGCTTTTCTCAAGAATCGCGAGCCTCTTCTTCGCCAACCTTA
CCTTCGGAGATCGGCATGGATGCGGCCCTCCTTCAAATCAACACATTAGA
AGGTGAACTATCAACTCTGGGAGGCCTTGATGATGTCGGACAAGATCAAT
CTCTGCCCGAAGATGTTTTCTTAGATAACAAGTCAACGCCCGCTTTAGAA
GAACAAAACGAACTCAAAGCATATCAACCAGTGAGTGGTTCATCAACACA
AGACTCTGTTGAATTTGATGCAGTGATGGGCGAACTAACTGATCTTGAAG
ACACTCTACTAGACATGGCAGGAGATCTTTTGGGAGGCACAAAGCTCCCC
AGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044145XLOC_044145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071056-exon-scaffold_58-1575043694:1356900..1357172TCONS_00071056-exon-scaffold_58-1575043694:1356900..1357172Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1356313..1356639TCONS_00071056-exon-scaffold_58-1575043694:1356313..1356639Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1356035..1356200TCONS_00071056-exon-scaffold_58-1575043694:1356035..1356200Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1355333..1355734TCONS_00071056-exon-scaffold_58-1575043694:1355333..1355734Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1354831..1354989TCONS_00071056-exon-scaffold_58-1575043694:1354831..1354989Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1354069..1354169TCONS_00071056-exon-scaffold_58-1575043694:1354069..1354169Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1353838..1353869TCONS_00071056-exon-scaffold_58-1575043694:1353838..1353869Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1352989..1353261TCONS_00071056-exon-scaffold_58-1575043694:1352989..1353261Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1352753..1352809TCONS_00071056-exon-scaffold_58-1575043694:1352753..1352809Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1352225..1352377TCONS_00071056-exon-scaffold_58-1575043694:1352225..1352377Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1351976..1352018TCONS_00071056-exon-scaffold_58-1575043694:1351976..1352018Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1351316..1351398TCONS_00071056-exon-scaffold_58-1575043694:1351316..1351398Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1575043694:1350178..1350961TCONS_00071056-exon-scaffold_58-1575043694:1350178..1350961Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1356900..1357172TCONS_00071056-exon-scaffold_58-1510915933:1356900..1357172Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1356313..1356639TCONS_00071056-exon-scaffold_58-1510915933:1356313..1356639Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1356035..1356200TCONS_00071056-exon-scaffold_58-1510915933:1356035..1356200Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1355333..1355734TCONS_00071056-exon-scaffold_58-1510915933:1355333..1355734Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1354831..1354989TCONS_00071056-exon-scaffold_58-1510915933:1354831..1354989Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1354069..1354169TCONS_00071056-exon-scaffold_58-1510915933:1354069..1354169Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1353838..1353869TCONS_00071056-exon-scaffold_58-1510915933:1353838..1353869Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1352989..1353261TCONS_00071056-exon-scaffold_58-1510915933:1352989..1353261Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1352753..1352809TCONS_00071056-exon-scaffold_58-1510915933:1352753..1352809Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1352225..1352377TCONS_00071056-exon-scaffold_58-1510915933:1352225..1352377Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1351976..1352018TCONS_00071056-exon-scaffold_58-1510915933:1351976..1352018Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1351316..1351398TCONS_00071056-exon-scaffold_58-1510915933:1351316..1351398Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1510915933:1350178..1350961TCONS_00071056-exon-scaffold_58-1510915933:1350178..1350961Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1356900..1357172TCONS_00071056-exon-scaffold_58-1491911889:1356900..1357172Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1356313..1356639TCONS_00071056-exon-scaffold_58-1491911889:1356313..1356639Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1356035..1356200TCONS_00071056-exon-scaffold_58-1491911889:1356035..1356200Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1355333..1355734TCONS_00071056-exon-scaffold_58-1491911889:1355333..1355734Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1354831..1354989TCONS_00071056-exon-scaffold_58-1491911889:1354831..1354989Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1354069..1354169TCONS_00071056-exon-scaffold_58-1491911889:1354069..1354169Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1353838..1353869TCONS_00071056-exon-scaffold_58-1491911889:1353838..1353869Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1352989..1353261TCONS_00071056-exon-scaffold_58-1491911889:1352989..1353261Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1352753..1352809TCONS_00071056-exon-scaffold_58-1491911889:1352753..1352809Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1352225..1352377TCONS_00071056-exon-scaffold_58-1491911889:1352225..1352377Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1351976..1352018TCONS_00071056-exon-scaffold_58-1491911889:1351976..1352018Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1351316..1351398TCONS_00071056-exon-scaffold_58-1491911889:1351316..1351398Clytia hemisphaericaexon
TCONS_00071056-exon-scaffold_58-1491911889:1350178..1350961TCONS_00071056-exon-scaffold_58-1491911889:1350178..1350961Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071056-proteinTCONS_00071056-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1350178..1357172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351265	0.34502	0	0.490504	0.349748	0	0.277	0	0.19009	0	0	0	0	0	0.0579069	0.161438	0	0.211939	0	0	0.129464	0.255125	0.18708	0.193111	9.47407	9.18025	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom
IPR001606ARID_dom
IPR011124Znf_CW
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00071056 vs. Swiss-Prot (Human)
Match: ZCPW2 (Zinc finger CW-type PWWP domain protein 2 OS=Homo sapiens GN=ZCWPW2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.711e-21
Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 2 
Query:   47 WVQCEYPQCMKWRKLLSGVQDEIKNIQ-WYCHMNPDKAYSFC-----DAPQQKMQVKKGETVVFSELELGSLVMAKMAGYPSWPAIITKDPAEPEGSHIIRYQDGTNDPKYYHVEFLGQMHTHAWISARQVQIYNTSSGILVFDERAMXXXXXXXXXXXXXQEASTFMNFSPEERLKRIIF 571
            WVQCE   C+KWR L S    ++ + + WYC MN D  Y+ C     D P++    + G  +V+S+L LGSLV+ K+  +PSWP I+   P   +G ++    DG  +   YH+EFLG  H+ +WI A  V  Y+ +        +  K K  K+ +  + QEA     +S E+RL+    
Sbjct:   30 WVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDFPEESQLHQCGFKIVYSQLPLGSLVLVKLQNWPSWPGILC--PDRFKGKYVTYDPDGNVEE--YHIEFLGDPHSRSWIKATFVGHYSITL-------KPEKCKNKKKWYKSALQEACLLYGYSHEQRLEMCCL 199
The following BLAST results are available for this feature:
BLAST of TCONS_00071056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCPW25.711e-2134.25Zinc finger CW-type PWWP domain protein 2 OS=Homo ... [more]
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