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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071076 ID=TCONS_00071076|Name=TCONS_00071076|organism=Clytia hemisphaerica|type=transcript|length=1489bp
tgtctactttgctttgtacgggaaaaacaccaaaacaccgtagaAGCAAa
atcgacataatgccgtacgtcaaatatcgaatttgctttcacccgccatt
actagttgccttactcgccattacCCTCGCCACtttaaccgtagccgtag
agaattctagatacataatctcgctaatggTTAAATATACGGTGTCTTTA
AATGACATAAATATTCATCTGACTGCTACCTTTCCCGATCCTTTCGTCAC
AAATTGCATGTAAAACTTCAAAGGTACATTTGTTCTTTTCAGTAAAATCT
TTCTCGGTTTCAAATCTTCTATTTTCGTTATGGTCGATTTAGATTGGTCT
GTTATGTCAGTCCTCAAATCTGATCGAATCAACTTTTTGACTGTCGAATC
TAATCGGTCGTTCGANCCTCAAATCTGATCGAATCAACTTTTTGACTTTC
GAATCTAATCGGTCGTTCGACATGTATGTATCTTCTGAACGGCTTGTTTT
CTGGCTTGGAACCAATCTGAGATTTTCAATATCCTCTGCCCTCGGTTTAT
ACTTCGAAAACGATTTCGTTCTAGTTAAATCTAGACTGGATCGTCTTGGA
GGTGGAGCAGGGGTTTGTAGTCTAGTTTTCTCTTGATTTGGTTTGTAAAA
AGTTGATACTTTATAACGATTTTCGGCGCATGCGCTTTTAGCCCTTGGCT
TCTtatttatgatgacgtcatcagtatGGTATGAAGAAAAGTCTCTACCT
TCGCTGACTTTGACTCTAAAAAGTCTTCTCTCCGTTTCTGAAAGCTGTTT
AAAGAAAGACTGTTCTTCAATGATATGGTTCGTTTTTGTTTGTCTAGAAC
CTGATTGGCTGTAATTCCTGTTTCTCGAACCGGATTGGTCCTTACGCTTT
GTTTTTATTCTGAATACCTCATTGTTTGGGTGCAAGGGAAACGTTTTCTC
ATTCATCCTCATCTTCAAACCAGGAAGGCTCCTTAAAACCGGCTCACTTT
GTGTTTTAAATATTCCACGGGATGGTCTTGTAGTCTGTTGCATGACCTTT
GCTGTCTtgactttcctttttttatagTTCTTACACAGACTATCACGGTG
TTCTTCAGAAATTGtctgtttttcttgttttctcaTTTCTTGCAGCCGAT
CCTCaaattcatcattttcatcacTAAAACTCTTTCGAGGATCTAGGTAG
AATTGTTTTTCTCGTGTTTTTGGGAAATAATTATCCTCGTATTCCTCATC
AAATACGTGTAATATCTTAGAGATATTTATATCTTCACTTCGTTCATCTT
TCCAGAGATGTGATGTTGAGATTGTCTTCTCTTTAGTTGGTAGATTCCGG
ATAACCGGTTCACTCTGAGTTTTCAATATACCGCGATTTGATTTCGTCGT
TTTACCTTGcattgtcgttgttgttgtaTCCACCTGGTTAAACAGAATGA
AACACATATTAGTAATTTTAGTCAGCTATTGCTTTTGCT Run BLAST on NCBI protein sequence of TCONS_00071076-protein >TCONS_00071076-protein ID=TCONS_00071076-protein|Name=TCONS_00071076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MCFILFNQVDTTTTTMQGKTTKSNRGILKTQSEPVIRNLPTKEKTISTSH
LWKDERSEDINISKILHVFDEEYEDNYFPKTREKQFYLDPRKSFSDENDE
FEDRLQEMRKQEKQTISEEHRDSLCKNYKKRKVKTAKVMQQTTRPSRGIF
KTQSEPVLRSLPGLKMRMNEKTFPLHPNNEVFRIKTKRKDQSGSRNRNYS
QSGSRQTKTNHIIEEQSFFKQLSETERRLFRVKVSEGRDFSSYHTDDVII
NKKPRAKSACAENRYKVSTFYKPNQEKTRLQTPAPPPRRSSLDLTRTKSF
SKYKPRAEDIENLRLVPSQKTSRSEDTYMSNDRLDSKVKKLIRSDLRXER
PIRFDSQKVDSIRFED Run BLAST on NCBI transcript from alignment at scaffold_58:265107..266595 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071076 ID=TCONS_00071076|Name=TCONS_00071076|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at scaffold_58:265107..266595 (Clytia hemisphaerica)
AGCAAAAGCAATAGCTGACTAAAATTACTAATATGTGTTTCATTCTGTTT
AACCAGGTGGAtacaacaacaacgacaatgCAAGGTAAAACGACGAAATC
AAATCGCGGTATATTGAAAACTCAGAGTGAACCGGTTATCCGGAATCTAC
CAACTAAAGAGAAGACAATCTCAACATCACATCTCTGGAAAGATGAACGA
AGTGAAGATATAAATATCTCTAAGATATTACACGTATTTGATGAGGAATA
CGAGGATAATTATTTCCCAAAAACACGAGAAAAACAATTCTACCTAGATC
CTCGAAAGAGTTTTAgtgatgaaaatgatgaatttGAGGATCGGCTGCAA
GAAAtgagaaaacaagaaaaacagaCAATTTCTGAAGAACACCGTGATAG
TCTGTGTAAGAActataaaaaaaggaaagtcaAGACAGCAAAGGTCATGC
AACAGACTACAAGACCATCCCGTGGAATATTTAAAACACAAAGTGAGCCG
GTTTTAAGGAGCCTTCCTGGTTTGAAGATGAGGATGAATGAGAAAACGTT
TCCCTTGCACCCAAACAATGAGGTATTCAGAATAAAAACAAAGCGTAAGG
ACCAATCCGGTTCGAGAAACAGGAATTACAGCCAATCAGGTTCTAGACAA
ACAAAAACGAACCATATCATTGAAGAACAGTCTTTCTTTAAACAGCTTTC
AGAAACGGAGAGAAGACTTTTTAGAGTCAAAGTCAGCGAAGGTAGAGACT
TTTCTTCATACCatactgatgacgtcatcataaataAGAAGCCAAGGGCT
AAAAGCGCATGCGCCGAAAATCGTTATAAAGTATCAACTTTTTACAAACC
AAATCAAGAGAAAACTAGACTACAAACCCCTGCTCCACCTCCAAGACGAT
CCAGTCTAGATTTAACTAGAACGAAATCGTTTTCGAAGTATAAACCGAGG
GCAGAGGATATTGAAAATCTCAGATTGGTTCCAAGCCAGAAAACAAGCCG
TTCAGAAGATACATACATGTCGAACGACCGATTAGATTCGAAAGTCAAAA
AGTTGATTCGATCAGATTTGAGGNTCGAACGACCGATTAGATTCGACAGT
CAAAAAGTTGATTCGATCAGATTTGAGGACTGACATAACAGACCAATCTA
AATCGACCATAACGAAAATAGAAGATTTGAAACCGAGAAAGATTTTACTG
AAAAGAACAAATGTACCTTTGAAGTTTTACATGCAATTTGTGACGAAAGG
ATCGGGAAAGGTAGCAGTCAGATGAATATTTATGTCATTTAAAGACACCG
TATATTTAAccattagcgagattatgtatctagaattctctacggctacg
gttaaaGTGGCGAGGgtaatggcgagtaaggcaactagtaatggcgggtg
aaagcaaattcgatatttgacgtacggcattatgtcgattTTGCTtctac
ggtgttttggtgtttttcccgtacaaagcaaagtagaca Coding sequence (CDS) from alignment at scaffold_58:265107..266595 >TCONS_00071076 ID=TCONS_00071076|Name=TCONS_00071076|organism=Clytia hemisphaerica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_58:265107..266595 (Clytia hemisphaerica)
ATGTGTTTCATTCTGTTTAACCAGGTGGAtacaacaacaacgacaatgCA
AGGTAAAACGACGAAATCAAATCGCGGTATATTGAAAACTCAGAGTGAAC
CGGTTATCCGGAATCTACCAACTAAAGAGAAGACAATCTCAACATCACAT
CTCTGGAAAGATGAACGAAGTGAAGATATAAATATCTCTAAGATATTACA
CGTATTTGATGAGGAATACGAGGATAATTATTTCCCAAAAACACGAGAAA
AACAATTCTACCTAGATCCTCGAAAGAGTTTTAgtgatgaaaatgatgaa
tttGAGGATCGGCTGCAAGAAAtgagaaaacaagaaaaacagaCAATTTC
TGAAGAACACCGTGATAGTCTGTGTAAGAActataaaaaaaggaaagtca
AGACAGCAAAGGTCATGCAACAGACTACAAGACCATCCCGTGGAATATTT
AAAACACAAAGTGAGCCGGTTTTAAGGAGCCTTCCTGGTTTGAAGATGAG
GATGAATGAGAAAACGTTTCCCTTGCACCCAAACAATGAGGTATTCAGAA
TAAAAACAAAGCGTAAGGACCAATCCGGTTCGAGAAACAGGAATTACAGC
CAATCAGGTTCTAGACAAACAAAAACGAACCATATCATTGAAGAACAGTC
TTTCTTTAAACAGCTTTCAGAAACGGAGAGAAGACTTTTTAGAGTCAAAG
TCAGCGAAGGTAGAGACTTTTCTTCATACCatactgatgacgtcatcata
aataAGAAGCCAAGGGCTAAAAGCGCATGCGCCGAAAATCGTTATAAAGT
ATCAACTTTTTACAAACCAAATCAAGAGAAAACTAGACTACAAACCCCTG
CTCCACCTCCAAGACGATCCAGTCTAGATTTAACTAGAACGAAATCGTTT
TCGAAGTATAAACCGAGGGCAGAGGATATTGAAAATCTCAGATTGGTTCC
AAGCCAGAAAACAAGCCGTTCAGAAGATACATACATGTCGAACGACCGAT
TAGATTCGAAAGTCAAAAAGTTGATTCGATCAGATTTGAGGNTCGAACGA
CCGATTAGATTCGACAGTCAAAAAGTTGATTCGATCAGATTTGAGGACTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071076-exon-scaffold_58-1491911889:265107..266595 | TCONS_00071076-exon-scaffold_58-1491911889:265107..266595 | Clytia hemisphaerica | exon |
| TCONS_00071076-exon-scaffold_58-1510915933:265107..266595 | TCONS_00071076-exon-scaffold_58-1510915933:265107..266595 | Clytia hemisphaerica | exon |
| TCONS_00071076-exon-scaffold_58-1575043694:265107..266595 | TCONS_00071076-exon-scaffold_58-1575043694:265107..266595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:265107..266595 . |
Blast
The following BLAST results are available for this feature:
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