TCONS_00071294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071294
Unique NameTCONS_00071294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071294 ID=TCONS_00071294|Name=TCONS_00071294|organism=Clytia hemisphaerica|type=transcript|length=1343bp
TCAGTATAAAAAATATACATAAGTACATCAACAATATAAAGATTAAAAAT
GTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCTTGGAGGTGAGATGA
TGTATATCCTGGATCAACGACTAAATGCACAGAATATCCCTCCAGGAAAA
GCTAAAAAGGTGATGCATGATATTCTGGCAACAATGCTGAACAAAAGGTT
CATGGAAGAACTGTTTAAACCACAAGACGCTTATTCCAGGAAAGCTATGA
GGACCGTCTTTGATCGTTTGGCACATGCATCTATCATGCGATTGAATTCT
GCTAGTATGGATAAGttgTACGATTTAATGACCATGGCTTTAAAATATCA
AgtgAGTTTGAGCAAGCAACCGCAAGATGTTTTAATGGTCACACTTAATC
ATATGGACACAATTAGAGAATATTCACGTGGAAATTCACAAATCTTGGAA
CAAGTTGATTACGTTTACAGTCTTATTAACGAGGCGTATTCTACGATGAC
ACCAGGAGAATTTCAACTGATTCGTCAAACCTTACTCAACTTCTTCCAAG
ATATGCATATCAGGGTTTCCATCTTTTTAAAAGACAAAGTTCAAACACCG
AACGGAAGATTCATTCTACCCAAAGGTGGAAAAGTACCATGGGGATCAGA
AACACCCGGAGTCATCAGATTTTACAACGATCAAGGCGAACAAGCCAACT
TGTCCAGTTTTTTCGTTGAAGGAAAATATCAACTTCCCGACAAACCAGGC
TCTTTTGAAATACTTGGTGATCGAGGAACAAGGCTTGGTGTTAACATGTA
TACGATGGCGAGACCAGTGGAGACATCCATCTCAACAACCGAATCTGTTA
CCAGCAAGCCATCCATACAATCTACAAAATCGGAAGCAGATGATGTTAAT
AATACGGAATCAGCGAAAGCAGAATTGAACTTGTTGAACCATCTCCTTGC
TGGTGCTAACAAAGACTCGAAAGACTTCCGATTGAATCTGTTTGACTCTG
ACGCGCAAGAACAAGTTGCAGAGAAGCAATACGCAAAAGTTCGCCATCGT
GAAGTCGTTGTTGATGCAACACAGCGATCACAAAGAAGTGAGATTACGCA
ACTGATGAATGAATTCTCTATCGAAAGCTCTGGTGCAGGTGGTGATAAAG
GAGATGATTTATTGGCCTTGATGGATTCCACTTGAAATTATATTTCAAAC
TGTCAATCATTGCACTAACAAGTGAGATTTTAACGCGTCGTCAAATTTTT
ATAGataATATTATTAAATTATGCTTTCAGAAGATTTTTGAATGTTGAAT
AGACGATAATTGGTAAGATTTTTAACATTAACCCTGTGTCCCC
Run BLAST on NCBI

protein sequence of TCONS_00071294-protein

>TCONS_00071294-protein ID=TCONS_00071294-protein|Name=TCONS_00071294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MSLKTLPVLFLNLGGEMMYILDQRLNAQNIPPGKAKKVMHDILATMLNKR
FMEELFKPQDAYSRKAMRTVFDRLAHASIMRLNSASMDKLYDLMTMALKY
QVSLSKQPQDVLMVTLNHMDTIREYSRGNSQILEQVDYVYSLINEAYSTM
TPGEFQLIRQTLLNFFQDMHIRVSIFLKDKVQTPNGRFILPKGGKVPWGS
ETPGVIRFYNDQGEQANLSSFFVEGKYQLPDKPGSFEILGDRGTRLGVNM
YTMARPVETSISTTESVTSKPSIQSTKSEADDVNNTESAKAELNLLNHLL
AGANKDSKDFRLNLFDSDAQEQVAEKQYAKVRHREVVVDATQRSQRSEIT
QLMNEFSIESSGAGGDKGDDLLALMDST
Run BLAST on NCBI

transcript from alignment at scaffold_60:1165311..1175332+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071294 ID=TCONS_00071294|Name=TCONS_00071294|organism=Clytia hemisphaerica|type=transcript|length=10022bp|location=Sequence derived from alignment at scaffold_60:1165311..1175332+ (Clytia hemisphaerica)
TCAGTATAAAAAATATACATAAGTACATCAACAATATAAAGATTAAAAAT
GTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCTTGGAGGTGAGATGA
TGTATATCCTGGATCAACGACTAAATGCACAGAATATCCCTCCAGGAAAA
GCTAAAAAGGGTAAAGTttcatttaattatttttttaatttgatttaatt
tcTTCTTCGTCTTTCAGGGCTTTCAGCACTTCAAAcgtgtacactttttt
ttgaaaccCGGTATCAGGATTCGAAAGTCGACGACAAATACTTTGATTAA
GAATATTCACATAACTTCCCTCATCCTTCAGAATAGATTTTCGGAATTTT
CTTTCAGCAGCTGGTAATGAATGGTTTCTCATATTTTGATTATAGTGATG
CATGATATTCTGGCAACAATGCTGAACAAAAGGTTCATGGAAGAACTGTT
TAAACCACAAGACGCTTATTCCAGGAAAGCTATGAGGACCGTCTTTGATC
GTTTGGCACATGCATCTATCATGCGATTGAATTCTGCTAGTATGGATAAG
GTATTAAAACTACAAGATTTATCAGTGAAGGTTCACTATCAATTTTACAT
TACCCCTATATCAAGGAAAGACAATTTTTGTATTTGATTCTTCTCAAAAG
AATTTCTTTCGAACTGaaacattattttattttattattttttagttgTA
CGATTTAATGACCATGGCTTTAAAATATCAAGTAAGTACCGTATAACACT
ATTTTActctttttattatttctttGGTTTGTCAATTTATAAACCACTAA
TCCTGGgtttgataaaaaacaaagtttcCAAAcaaagtttggaaaaaaaa
ggaaaatgaaaatgaaaaatgaagaagaagaaaatcaattccttgtagaa
atgtggtataattaccattttcacaggagtgatttttggacctaccccgg
tggggtggaggtcctataaattaacccgtgttcgttagttagttagttag
ttagttagttaccaacttttctcgagattggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaatagatatataa
atcgaaatttaaaattatacattacttccattaaattctaattattcgtt
ttataaataggtaggtccattaaagtattacttgttcaatcttagatcat
catcactgtcaaaaaattttcaaaaatattcattcaatctaAAGacatca
aacaaagtttattcctggttgactctataaagtagtaaaaaatgacaaaa
aaacagccaTTTGTTGATCatatggtaattataccacatttctacaagaa
gtagatttttttctttttcatttttcattttcattttcattttttttctc
aatttttttacttgataatattccactcacgaatatatttttaacgagca
caaagtcgcaacttgattcgaattctatcaaaagttacagccattttttt
ctccagctgtaaattattttgagacagactttagttttaTCTAAGGTTTA
ACTACTTCTGGTGTGGAAATTTAAAACTGAAATACAGAAAAGCTCAATTT
CAAGCCGTAATAGgaataacttttttataagaaaaaattgaaagttttta
aattagaacttttcttaagaaaaaattaaaaatctacCTTTAATAAAAGT
CTACCCTATCCTCTATCATCATCAGTGTCAGCTGCAGATTATTCTGAGAc
agacttttatttttattttaggtgAGTTTGAGCAAGCAACCGCAAGATGT
TTTAATGGTCACACTTAATCATATGGACACAATTAGAGAATATTCACGTG
GAAATTCACAAATCTTGGAACAAGTTGATTACGTTTACAGTCTTATTAAC
GAGGTATCAATCTCTATTGTAAAATATCTACCTTAAACCTCTGATTCCGT
GATattagtttttgttttgctCATTTCTTATATGTTTTCAATGTATATTT
CAATGTTCCAGCTTATCTAGTTGCATAAGAAAGTGCGTCAATGAAGATGG
AAATCTAAACCTGAAAATGTCATCTCATCTGAATCTTCATTTACAGTATG
GTTTTAAAAGTAAAACCTCttgattttaaattaattttggtgTANTGAAC
CTTCATTTAtggttttaaaaataaaacctcttGATTTTAGATTAATTTTG
GTGTATTTTTTTCCCAACAGGCGTATTCTACGATGACACCAGGAGAATTT
CAACTGATTCGTCAAACCTTACTCAACTTCTTCCAAGATATGCATATCAG
GGTAAGTTATTCCGTCAATTTCTCTAGCTATAAAGTGTTTAATGATTCTT
TTCTAGCCGATGATGTAGAGTTctattctttttgtttatcatttATATAT
CATTCATATATCATTTCACCCTCCCCCCCCTGAAAGGTACAACTCAAATC
AAACTCCTTagacaagaaagcctaagcggcGTAAACAAAAGGCCCAGTAG
TGTTGGTAGTGTCAACATAATTTTCCGTTGTACAGTCGCCATACAACCTT
AATTTACCGGATATATATCCTGAGCAACTATATTTAGAGCAACTAGAGTC
GGGCGATCAATTAAAAATTGATTATTCTAATTTTTATGAGATATAAGTAT
CTCTTACTGTTTCAATATAAAGATTTGACCATATCATATTAATTATATGT
GGTTTTTCTTACGCATGCGAACAATAGTAAGTCAGATAATTCGATTTTTA
GCCTAGACTCGTCAACTGATAATTGCGCGcataggccccgacaaagtcaa
ATTTCGACCAGTTGTGTTTTAAAGGCCCATTCCGCTGCGCGCTTggccaa
aaaacgtaaaaagtcTCTCGAAACCCCCTGAGGTTTCTTGTTTGTTCGAC
CACCCCCATGTATGAATATAAACCGATATCAAATTAAATTGTCCATTTTA
CGTGTTTTTTCTTCATTCTACTTTCTAGGTTTCCATCTTTTTAAAAGACA
AAGTTCAAACACCGAACGGAAGATTCATTCTACCCAAAGGTGGAAAAGTA
CCATGGGGATCAGAAACACCCGGAGTCATCAGGTAATtgattttgaatct
ttttttatcAGTCTTTTATATTTAATGCATTGTAAGATCTCTTGGGGGGA
GGAAAGGAAAtcgatttttttaatatttttaattaaGGAAATTGGCTGTT
ATGGGTTTTAAGAATAAAGTGTCGTTTTGTCGTTGTTTTACAGAGTGATG
AAGAGAAAAACTAAGCAAGACCATGAAGTTTCGGTTGATACTCTCAGAAG
ATCTTATGATTTCAGTTTAAAGACTTCACTCTTCTTGACACCCGAAGCTC
TAAATTTAGAAACTTCCTTAGAAAGCAGCTGGAGTTTATCTTATCATCTT
GTAAAACCTTTATAAACTGTGCAGTTTTTTGAATGAGAATAATTAATTAA
TCTTTCAGGCTGTAATATCCCCTCGTGGCCTAATTTTTTCTTCTGCCATA
CTAACTTTTATCTCTTcagaatttcaaaatcaaattttgagaacaaaagg
tttactGAACTGGCAATGTAAGTTTGGAAACAgaagattgtttaaaattt
caagtCGTACAATAACGAGTTTATAAaacacaatttcttttttactaTAG
ATTTTACAACGATCAAGGCGAACAAGCCAACTTGTCCAGTTTTTTCGTTG
AAGGAAAATATCAACTTCCCGACAAACCAGGCTCTTTTGAAATACTTGGT
GATCGAGGAACAAGGCTTGGTGTTAACATGTAAGTGATTGCGACGACCTA
TACCCCCTTCCATCAGAAAATTGGGGTTCCCTTTTTGTAGTTATACCGTT
TTGAGGAATGAATGCAATGAAAATCTAAACTTCACAGTTCATGTCCGCTA
ATTTTAATTAATCTATATTTTCTGTGCAGTTATTATTAATCGctagtacc
ttatcggggagaAAAGTCGGAATTTTTACAGATGAGAAAGATTTAAGTCA
CTTTCCCCAAAAAAACTTGACCCGgtctatttttttcctttttctccgAC
TAGAAAATAACGATTACCGTAACGGCAGTGCAGAAAATACAGATTAACCA
AGAATACCAGACAGAGAAAAATGGCCTCTCCTTTCCCTCGGCTAGTCTTT
TAAGCTACCTTACcttcccagccggcacacaacgttatttcaacgtccat
acaacgttcataacgtccatataacgttagatgaacgttgaaacaacgtt
gggtGCCAGCTGGGTTTAGTGTTGAACTCTAACAAAATCTTAGATTTTTG
ATTTGTGAAAAAAAAGTCCACATGAAAATTAATCCACCTTGATATACCTT
TTCATTCAGGTATACGATGGCGAGACCAGTGGAGACATCCATCTCAACAA
CCGAATCTGTTACCAGCAAGCCATCCATACAATCTACAAAATCGgtatat
tttgatttctttctctGTGTCCATTGTGTTTAAGGCCTTATTTAACGCAT
CCAGAAAATAAATTTAGTCGTATTTGAAAAGTTGAACCTCGTGAACCGAA
AATATGACCTAATAAGGTTGGCcatcgcggtgtcactaaacttcagcccc
cccccaatataaaaatgcttcctacggcactgacaTTTGTTTTTAATTCT
CATATCCATAGGAAGCAGATGATGTTAATAATACGGAATCAGCGAAAGCA
GAATTGAACTTGTTGAACCATCTCCTTGCTGGTGCTAACAAAGGTTTGAT
CGCATTAACATTATTATTCTGAAAGTTGCTTTAGCGAGTTTCTCCATCAT
GGGTTTTGTAATTGCTAGCTGATCAAATATGTGCTCTGGTTTAATATGTA
TCAATAAATTTCGGGGATCGTAATTATGACTAATTTAGGCGTTGTCTATA
ATAATAACTTTTATACTTCCTGCTTCAATCAAGGCAATAAAATATTAAGT
TTGGGGTAAAAATATTGTCGGCTAAACTTTTTGTCGAGTACGATTGATGT
CGAGTAAGACCAAAAAGCTGACACAGTTCTCACGTCAAAACTTgtaattt
gaatatcttttttttttctcaggacCATAACAAAATCAACAGTCCAAATT
ACTCAAACTATCAGACTATTCTTTAAAACccttttgtttgtatttttccA
TTTAGACTCGAAAGACTTCCGATTGAATCTGTTTGACTCTGACGCGCAAG
AACAGTAAGAGAAAATCTTTTCTTTGATTAACAATTTTCTCTgttataaa
caataaaattcaaaactaaCTAGGGTATGACTAGAAAAACTGATGACCAA
ATCATAGTGTAGTAGCGTCGTTTATACGAACTAGAACTAATTATTATCCC
GTAACAGTTTGCGTACTCTCATATAACCTATATCACTGCTTAAAGGCCGA
TCTCCATTTTCGCGCGAAATgagcgacagtttttttcttaaccttttttg
cctgaagaaaagattacgtcataaaaaagtttcgcgcgaacaaacaaaaa
tttgagggAAGTGCTACTTTTTTCATctgttacgtcaatttcgaccaatg
gaattgcttcatttttcaaccgaccaatgaccttacaaaaacgtcaaaaa
gttttcgctcatgtcgcgcgaaagtggagaccggccttaacacGTAATAT
ATAAAcgagtctacttctgactgaactttgatTTCTGACGATTTTGAGGG
CGCTGGAGTACAGTCAgcgtcatccagtctatcaaaaatcTATAAGTGGC
CCCCGGGCTACAAAATTCCTTGTCACATATTTTTTTGTCGTGGTTTGATC
AAATATTTCCTTTTACTAATACTCTTTTCAGTAAGGTTCATCACCGGCAC
CCTTCATATTATTTTCACTGACTATGTTTTCACTTCGAGATGATCGCTCA
AATTAATATAAACATTGGCATTCTATTTTCTTTTCCAGAGTTGCAGAGAA
GCAATACGCAAAAGTTCGCCATCGTGAAGTCGTTGTTGATGCAACACAGG
TATAAACAGTAAAATAAAGAGATAAAGTTGCTTCAAGATTCTGAGAAACA
GAGACAACTGAAAATTTTGGGGCATTTTTCATCCGGGTTAATTGTCTAGG
GGTAATAGTCCCTATTGCTATTGGTATTTGTTCAGGGAGCACCTACTTTC
CTCGGGACCAATTTTCTCAGTTCTGTCCTGTCACGATGCTTATATGATGT
CTACTCATAAGGaaagttgtttttgaatttccaaaCTCGTTAGCTTCTTT
ATATTACACATTTTACGATGTcgtaatttttcatttgaatttcatttcaa
CAACTTTAGCGATCACAAAGAAGTGAGATTACGCAACTGATGAATGAATT
CTCTATCGAAAGCTCTGGTGCAGGTACTCtcaccattttttgaatttctc
ttGATATTACGAACTATAATTTAGGTAACCCTTTTTCAAAGACCACAATA
CAGGAGATAGCACACTGACATAATTTCAACCGAACACTGTAGATCTCCTC
ATGAATAGTTCATTTATCCACCATCGTAAAAGAgcattatatttcaaaat
aggGGTGCCATACCTactgaagttttttttaaattaatttttcaaaaggt
aCATTCACGGTAAAGTCCAGTATTTTCATCCTTTCTGGGTGTTACCAATG
CTGTTTGGTATGTGTGGACGGTTAGGGTAAGCTTTTCGACCCTCCCCAAG
TCTCTAAAGGGTTACAAAAAGGACAAAACGTAAGAATAGTCTCTCTAGTA
GTCAGGATTCCCGTCCCCTCCCTTGTACCAATGACGACGATTTTtagtag
tttttttttcatctttacaGGTGGTGATAAAGGAGATGATTTATTGGCCT
TGATGGATTCCACTTGAAATTATATTTCAAACTGTCAATCATTGCACTAA
CAAGTGAGATTTTAACGCGTCGTCAAATTTTTATAGGTATTTATTTAACT
TTCTGTACTATACGggagaaattgaaattttatcaaTAGTTATTCCTCAA
ATAATTGGCAGTTAGTAAAAAGttaacaattttaaaaaaaagttaatttt
tacttttaaacCACTGAATTAAACTATTATAAACTAAACTGAATTCAATA
GGTTATATACCAAGTTTTAGTTTgcctttcttttttcttcacaataaagt
tttttttatagaaatacacatacactttttttttttgtaagcataacgtt
tatacgAATACTTAAAGCTTAAATtcggtaaaaaataagcatacctccaa
gctgaaatgcaaaaaaaatgagcAACTTTTCTAAAACACTGATcttttta
gggttacttttaaaAGGCTTCTTTAGCTTTCATAGACCAAAGATTTTCCC
CTGCGGCGCCAAATTACAAAAAGACTGTAATTCTTTGAGCCGAATCAATG
TTCCTTCCgacttaaaaattcgaaatttccatgaagccaaagaaaatcaa
cagaTTGAAGTCTAAGCATATAAATGAGCATTAATAAAATGAGATTTTAA
CTTTTCATTTGCCTATGACCTATATAGattaggggtagaaaccaatcaag
tagtcagacggctgagaagtaagtgtgagacggtagatataagtttggca
tgaaattatggctaatcctcgaataataagttttggggaaaatttgtccc
gataaatacaatattagtataaataaatgaggattgcctacaaccataac
tccagggagggagggagggaggtaaaaaatatttcatcctgtcagctttc
agttagagcgTCAACTTGAACAGGGAGTTGCAATAGCCATTATGAACATG
ACGTCACGTACGGTtattagcaaagtagactcaCTTGGCAGAGGGCGGCC
ACCCAGCCATTCCAATACTGTggcgcttatcaaataaaagttaagcCGCG
ATTTAACCTGTGTTAGATCCAGATTTTCTAAGCCTCAATccgattttccc
gtatgcttcaaaatcattttaattacaTAATTACTTAATTAGAGGTCGTT
TTAATGGTGGTGTCATTAAATTTGTCTCGCGAAACCTTTATTTGTGTGCA
GAGTGCATTGTTTATATACGTGTGTTTGCATGGTTGAGATAAGTATACTT
TTGAATAGTTTTGATAAAGGTTGCGGCTTGAATTTGGGTTTTTTTGAGTT
TCTCATTGcaatatttaaagattttagaaatttgtAATTTTAAATCTCTT
CTTTTAATGAAAAGTCGAgacaaatatattgaaaaaaatgccAACTGCCA
ATTATTTAGGAGTTTAGTTAGTCAAAAACAATTACTTGATTCATGAATCA
AATTGAACATTTTATGATGGTATCTTAGGCtgttttatgaaaatattttt
aatgtaTAATTTATTGCTTTTACTGTAAAATTTTATGATCGATTAGTAGT
TATTTGTGGGTCACACCACACCATGCTAATATCCAATATCCTAGATGAAT
TATCCATGTATTTgaactgtttttattttgtagataATATTATTAAATTA
TGCTTTCAGAAGATTTTTGAATGTTGAATAGACGATAATTGGTAAGATTT
TTAACATTAACCCTGTGTCCCC

Coding sequence (CDS) from alignment at scaffold_60:1165311..1175332+

>TCONS_00071294 ID=TCONS_00071294|Name=TCONS_00071294|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_60:1165311..1175332+ (Clytia hemisphaerica)
ATGTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCTTGGAGGTGAGAT
GATGTATATCCTGGATCAACGACTAAATGCACAGAATATCCCTCCAGGAA
AAGCTAAAAAGGTGATGCATGATATTCTGGCAACAATGCTGAACAAAAGG
TTCATGGAAGAACTGTTTAAACCACAAGACGCTTATTCCAGGAAAGCTAT
GAGGACCGTCTTTGATCGTTTGGCACATGCATCTATCATGCGATTGAATT
CTGCTAGTATGGATAAGttgTACGATTTAATGACCATGGCTTTAAAATAT
CAAgtgAGTTTGAGCAAGCAACCGCAAGATGTTTTAATGGTCACACTTAA
TCATATGGACACAATTAGAGAATATTCACGTGGAAATTCACAAATCTTGG
AACAAGTTGATTACGTTTACAGTCTTATTAACGAGGCGTATTCTACGATG
ACACCAGGAGAATTTCAACTGATTCGTCAAACCTTACTCAACTTCTTCCA
AGATATGCATATCAGGGTTTCCATCTTTTTAAAAGACAAAGTTCAAACAC
CGAACGGAAGATTCATTCTACCCAAAGGTGGAAAAGTACCATGGGGATCA
GAAACACCCGGAGTCATCAGATTTTACAACGATCAAGGCGAACAAGCCAA
CTTGTCCAGTTTTTTCGTTGAAGGAAAATATCAACTTCCCGACAAACCAG
GCTCTTTTGAAATACTTGGTGATCGAGGAACAAGGCTTGGTGTTAACATG
TATACGATGGCGAGACCAGTGGAGACATCCATCTCAACAACCGAATCTGT
TACCAGCAAGCCATCCATACAATCTACAAAATCGGAAGCAGATGATGTTA
ATAATACGGAATCAGCGAAAGCAGAATTGAACTTGTTGAACCATCTCCTT
GCTGGTGCTAACAAAGACTCGAAAGACTTCCGATTGAATCTGTTTGACTC
TGACGCGCAAGAACAAGTTGCAGAGAAGCAATACGCAAAAGTTCGCCATC
GTGAAGTCGTTGTTGATGCAACACAGCGATCACAAAGAAGTGAGATTACG
CAACTGATGAATGAATTCTCTATCGAAAGCTCTGGTGCAGGTGGTGATAA
AGGAGATGATTTATTGGCCTTGATGGATTCCACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044307XLOC_044307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071294-exon-scaffold_60-1491911889:1165311..1165470TCONS_00071294-exon-scaffold_60-1491911889:1165311..1165470Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1165311..1165470TCONS_00071294-exon-scaffold_60-1510915933:1165311..1165470Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1165311..1165470TCONS_00071294-exon-scaffold_60-1575043694:1165311..1165470Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1165706..1165860TCONS_00071294-exon-scaffold_60-1491911889:1165706..1165860Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1165706..1165860TCONS_00071294-exon-scaffold_60-1510915933:1165706..1165860Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1165706..1165860TCONS_00071294-exon-scaffold_60-1575043694:1165706..1165860Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1166006..1166041TCONS_00071294-exon-scaffold_60-1491911889:1166006..1166041Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1166006..1166041TCONS_00071294-exon-scaffold_60-1510915933:1166006..1166041Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1166006..1166041TCONS_00071294-exon-scaffold_60-1575043694:1166006..1166041Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1168532..1168663TCONS_00071294-exon-scaffold_60-1491911889:1168532..1168663Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1168532..1168663TCONS_00071294-exon-scaffold_60-1510915933:1168532..1168663Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1168532..1168663TCONS_00071294-exon-scaffold_60-1575043694:1168532..1168663Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1168981..1169061TCONS_00071294-exon-scaffold_60-1491911889:1168981..1169061Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1168981..1169061TCONS_00071294-exon-scaffold_60-1510915933:1168981..1169061Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1168981..1169061TCONS_00071294-exon-scaffold_60-1575043694:1168981..1169061Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1169739..1169842TCONS_00071294-exon-scaffold_60-1491911889:1169739..1169842Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1169739..1169842TCONS_00071294-exon-scaffold_60-1510915933:1169739..1169842Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1169739..1169842TCONS_00071294-exon-scaffold_60-1575043694:1169739..1169842Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1170411..1170539TCONS_00071294-exon-scaffold_60-1491911889:1170411..1170539Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1170411..1170539TCONS_00071294-exon-scaffold_60-1510915933:1170411..1170539Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1170411..1170539TCONS_00071294-exon-scaffold_60-1575043694:1170411..1170539Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1171120..1171204TCONS_00071294-exon-scaffold_60-1491911889:1171120..1171204Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1171120..1171204TCONS_00071294-exon-scaffold_60-1510915933:1171120..1171204Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1171120..1171204TCONS_00071294-exon-scaffold_60-1575043694:1171120..1171204Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1171422..1171503TCONS_00071294-exon-scaffold_60-1491911889:1171422..1171503Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1171422..1171503TCONS_00071294-exon-scaffold_60-1510915933:1171422..1171503Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1171422..1171503TCONS_00071294-exon-scaffold_60-1575043694:1171422..1171503Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1171916..1171964TCONS_00071294-exon-scaffold_60-1491911889:1171916..1171964Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1171916..1171964TCONS_00071294-exon-scaffold_60-1510915933:1171916..1171964Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1171916..1171964TCONS_00071294-exon-scaffold_60-1575043694:1171916..1171964Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1172699..1172759TCONS_00071294-exon-scaffold_60-1491911889:1172699..1172759Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1172699..1172759TCONS_00071294-exon-scaffold_60-1510915933:1172699..1172759Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1172699..1172759TCONS_00071294-exon-scaffold_60-1575043694:1172699..1172759Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1173070..1173133TCONS_00071294-exon-scaffold_60-1491911889:1173070..1173133Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1173070..1173133TCONS_00071294-exon-scaffold_60-1510915933:1173070..1173133Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1173070..1173133TCONS_00071294-exon-scaffold_60-1575043694:1173070..1173133Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1173581..1173696TCONS_00071294-exon-scaffold_60-1491911889:1173581..1173696Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1173581..1173696TCONS_00071294-exon-scaffold_60-1510915933:1173581..1173696Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1173581..1173696TCONS_00071294-exon-scaffold_60-1575043694:1173581..1173696Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1491911889:1175244..1175332TCONS_00071294-exon-scaffold_60-1491911889:1175244..1175332Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1510915933:1175244..1175332TCONS_00071294-exon-scaffold_60-1510915933:1175244..1175332Clytia hemisphaericaexon
TCONS_00071294-exon-scaffold_60-1575043694:1175244..1175332TCONS_00071294-exon-scaffold_60-1575043694:1175244..1175332Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071294-proteinTCONS_00071294-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1165311..1175332 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.47027	1.4625	0.844426	0	15.3524	14.2938	6.22856	12.3247	18.0657	13.9674	10.3902	10.1782	9.8206	7.66602	6.81277	9.17425	9.78856	13.0768	5.31267	6.66218	6.24285	4.72194	2.78394	4.42413	10.482	8.66106	3.8942	1.24196	3.71489	4.01526
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019332OSCP1
Blast
[Close]
BLAST of TCONS_00071294 vs. Swiss-Prot (Human)
Match: OSCP1 (Protein OSCP1 OS=Homo sapiens GN=OSCP1 PE=1 SV=4)

HSP 1 Score: 351.288 bits (900), Expect = 8.881e-117
Identity = 191/373 (51.21%), Postives = 250/373 (67.02%), Query Frame = 1 
Query:   49 MSLKTLPVLFLNLGGEMMYILDQRLNAQNIPPGKAKK----------VMHDILATMLNKRFMEELFKPQDAYSRKAMRTVFDRLAHASIMRLNSASMDKLYDLMTMALKYQVSLSKQPQDVLMVTLNHMDTIREYSRGNSQILEQVDYVYSLINEAYSTMTPGEFQLIRQTLLNFFQDMHIRVSIFLKDKVQTPNGRFILPKGGKVPWGSETPGVIRFYNDQGEQANLSSFFVEGKYQLPDKPGSFEILGDRGTRLGVNMYTMARPXXXXXXXXXXXXXKPSIQSTKSEADDVNNTESAKXXXXXXXXXXXXXXKDS---KDFRLNLFDSD-AQEQVAEKQYAKVRHREVVVDATQRSQRS-EITQLMNEFSI 1122
            MS++TLP+LFLNLGGEM+YILDQRL AQNIP  KA+K          V++DI++TM N++FMEELFKPQ+ YS+KA+RTV++RLAHASIM+LN ASMDKLYDLMTMA KYQV L  +P+DVL+VT NH+DTI+ + R +  IL+QVD     + E Y  ++ GEFQLIRQTLL FFQD+HIRVS+FLKDKVQ  NGRF+LP  G VPWG+E PG+IR +N++GE+     F   G Y    K GSFE+ GDR  +LG NMY++ +PVET +S +       ++ S   E+   N     +              K S     FRLNLF +D  +EQ A  +  ++ +  + + ATQ  QRS E+ ++M EF I
Sbjct:    1 MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSK-----NLASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEI 368
The following BLAST results are available for this feature:
BLAST of TCONS_00071294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSCP18.881e-11751.21Protein OSCP1 OS=Homo sapiens GN=OSCP1 PE=1 SV=4[more]
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