TCONS_00071308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071308
Unique NameTCONS_00071308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071308 ID=TCONS_00071308|Name=TCONS_00071308|organism=Clytia hemisphaerica|type=transcript|length=1732bp
tttagcttttataaaagtagaaatttataaaaaagaaaaggaagattTGT
CGAAGACCAAAATAATAATGGATGTAAACATATCAGAAAATGTCCTTGAA
AAATTAAGTAATCTTTACAAGTTGAAAAAGgatgaagttaagaaaattct
ttcaacaccACCTCAATCAGCAGTTATAAGGGTcaatataaatttgataa
atataAATGATGCTATTGAAGTTTGCAAATCCTTTTTAAAGAACTGTGAC
ACTCATTACTCTGTCAAAATTCATCCACAAATCAAAGATGCATTGATCAT
TGAACCAAAGAACTTTGAAAACAAACCAGAACCACTACAGAAAGAAATCA
TTGTTGATTCTAGTTGTGGTACAGCTGTTCTTAGAGGAGCTGATATCTTT
GTACCTGGAGTATTAGCAGCAAATTCAAATGTTGTTGCTGGCGATCTTGT
TTCTGTATATTGTGACGTAAAAAAGAAATGTCGAAAAGGATTTACAAAAC
ATTTTGATGGTGAAAAATTCTATCTTGGTAATGGTAAAGCCCTATTCAGT
CGTTGGCAattatttgaagaaaatgatgTCGACAAAAATGATGTTTGTGG
TGTTGCAATAAAGATGGGTGAAAGTAAATTCAATTTACCAAGTTTTCACA
ACTTGCAACCAGATTTGTTTTTCCCACAAAACCTACCCTCCATAATAGTT
GGTCATTTGCTAGACATTGAAGAAAATGATTTGGTATTAGACATGTGTGC
TGCACCAGGAGGGAAAACATCACACTTGGCTACATTATTGAGAAAGgGCA
AACTAATATCAATagacaaaacacaaaataagGTGGATAGAATCAAAGAA
AATCTCCGGAAACTCAAATTGAATAATGTTGAATGTCATTGTTATGATAG
CACGAAGATCCTATGCAATGAAGATGAAAatgaaagtgacgaaaatggcC
CACCATTTCCATCATCTACATTTGATCGGATTCTTCTTGATCCACCTTGT
AGTGGTTTGGGACAAAGACCACAATTACGTTACACATTCAGTGATAAAGA
ACTGGCTTCTTATccaattcttcaaaagaaattcttcaaacAGGCAGTTC
CATTACTGAAAACTGGCGGGACACTTGTTTTTTCAACTTGTACTTTATGT
CCAGAAGAAAATGAAGCTCAAGTTGCTTGGGCATTACAATCGTTTTCTGA
TTTGTCACTGGTTGAACAAGAAATACGGATAGGAAGCATTGGTTTGGCAG
GTTATGGTCTTTCAGATGAACAACGAGAAAAAGTGCAGCGGTTTGATGCT
GTTTTTAACAACTATACAAGAACTGATATTTATAATGACTCTATTGGGTT
TTTCATAGCTAAATTTGTTAAGAGGGAAAGATGACAAAAACTAAAGATAT
TTGTTCTTAATTTAATCGTACTCAAAATTGTGTAACCATTCAAAAATGAA
CATGAACATTTATGATGTCTGGTATATGCAAGGCAGTTTTAGTCGAATTG
CTTATCAAATAAGTATTTACGTATGaatgaaattcagaaaaaataaaacg
AATTGGTTCAATAACTATTTACATTACATTTTGCGATGataccaacaaaa
acaacaacaaaaatttttgaataattacATATTGCTTCTTAACATTTCAC
TTCTTGGGTGATGTTTTGGTGTTTTCGTCACTTGGAGGTGAATGAAGACG
CGCAACTTCTGAATCTGATGTCTAGAAGAATA
Run BLAST on NCBI

protein sequence of TCONS_00071308-protein

>TCONS_00071308-protein ID=TCONS_00071308-protein|Name=TCONS_00071308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
LAFIKVEIYKKEKEDLSKTKIIMDVNISENVLEKLSNLYKLKKDEVKKIL
STPPQSAVIRVNINLININDAIEVCKSFLKNCDTHYSVKIHPQIKDALII
EPKNFENKPEPLQKEIIVDSSCGTAVLRGADIFVPGVLAANSNVVAGDLV
SVYCDVKKKCRKGFTKHFDGEKFYLGNGKALFSRWQLFEENDVDKNDVCG
VAIKMGESKFNLPSFHNLQPDLFFPQNLPSIIVGHLLDIEENDLVLDMCA
APGGKTSHLATLLRKGKLISIDKTQNKVDRIKENLRKLKLNNVECHCYDS
TKILCNEDENESDENGPPFPSSTFDRILLDPPCSGLGQRPQLRYTFSDKE
LASYPILQKKFFKQAVPLLKTGGTLVFSTCTLCPEENEAQVAWALQSFSD
LSLVEQEIRIGSIGLAGYGLSDEQREKVQRFDAVFNNYTRTDIYNDSIGF
FIAKFVKRER
Run BLAST on NCBI

transcript from alignment at scaffold_60:1596702..1602772+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071308 ID=TCONS_00071308|Name=TCONS_00071308|organism=Clytia hemisphaerica|type=transcript|length=6071bp|location=Sequence derived from alignment at scaffold_60:1596702..1602772+ (Clytia hemisphaerica)
tttagcttttataaaagtagaaatttataaaaaagaaaaggaagattTGT CGAAGACCAAAATAATAATGGATGTAAACATATCAGAAAATGTCCTTGAA AAATTAAGTAATCTTTACAAGTTGAAAAAGGTAcaattgattgattttta aattttcttcatGAATTGTAGTCTGTTCCAAAAAGATTGGCAGTCTGTAC TTTTTTAAACAACTTTTGCTTATCCAAATACACTTTTGAAATTAAAGCTT TAGGAAATTATGAAATAAGAATTGTTAATTGACTACCCggtgtgccacaa aaaagtttctctctttaatttttaacgttttcgagcactttctgaaagta actattttattcaattgagcataacttttgatctaatgaatcgaatttat taaatgacccatcaaaatttaagtctgtctttcttctttccaataaaata ggaatagttcttttaaaatttttagattacgagaaatttagtttcaaaga gagaaactttttttgtggcgcacccagTAGAAAATTCTTCTATTTTTTAT CttaatttgcaaatttttcaaactgctCTCCAAAGCTTAAATCATAATCT GCTTAAAATTACTTTTCCAAAGAGGTATtacttttgattgaatttttctt CTCTCAAAAGTAATactcaaacaatttttttggaatagactttaatgtaa tttttattttttcttattttcgtaGAATTTATGATCTattaattttcacc aaatttgtACTAATTGctttaatgtttttattcgcatgtttttaattgtt tcaggatgaagttaagaaaattctttcaacaccACCTCAATCAGCAGTTA TAAGGGTcaatataaatttgataaatataAATGATGCTATTGAAGTTTGC AAATCCTTTTTAAAGGTTAGTTTTTCTGAGACTCCTCTCAGCTTGTATTC ATTTATTCTAAAGTCAGGTTAAGAGAAGTTTTCAGAAGCGGTCATTTGCC TTGTAAAGGCagtaaactcaaaaagttgttTGTCAATTTTATGAAGGGag ctttttcttgatttttcagtaaaattttgctgaggctcagctggagactt caaaaattatccaattttgttgaaatttttgcACACATGATCCTTGGGTG AAtctctgggggtgtttttttcattttttcaaaattctcatttttaaggC AGTGGTCACAatatttcgccaaaacgaggctaaaactttgtggcaggctg gagacttcaaaaatagtaggatttggctgaaattttgcacacttgttcct tgagtGAATACCTGGgggttttttaaaagttttccattttaagggcgtgg tcacaataattctccaaaacgaggctaaaactttggggtaggctggagac ttcaaaaatagtcggatttggctgaaatttggcacacttgttccttgggt gaatatctggggggtatttttcatgttttcaaaattttgatttttagggg cGTGCTTACGCGTTTTAGCCTCAAAACAAGGCTAAAACCTATTTAAGAAA TgctaaaattttaaaagctattaagtttacaattgtgCCTACAAacgatt tcaaagatactgaagttgagccaatGCGGTTAGTACGTTCGACAGTTCTT ATCTTTAAGGTGTAATTGAGGTATATTATTATACCCAAGTTTTACTACTT CGAGCTTCATTgatcttataaaattgttcttaaatactatatatatcatt ttttaaatgaaaaaaggtGGAATTTTCTCCAATTTCTTCACAACAGATAG AAACATAAGATTGACCAAGActacatttttttcataattattggGAGCAA GAaggagaaactttttttcaattagcAATCATTTCAGTTCTGCCTGTTCT CCACCCTTTCTATATCTTTCTTATCTCTAAAGAATAGAAGAACTCAagaa attttacctcaaaagaGGATAAATTATTTCTGGCACACCggtattaaaaa attatttattccCTCTGTTTTTTAAGAACTGTGACACTCATTACTCTGTC AAAATTCATCCACAAATCAAAGATGCATTGATCATTGAACCAAAGAACTT TGAAAACAAACCAGAACCACTACAGAAAGAAATCATTGTTGATTCTAGTT GTGGTACAGCTGTTCTTAGAGGAGCTGATATCTTTGTACCTGGAGTATTA GCAGCAAATTCAAGTAAATTCTTATTGCTTCCGTTATGCATTTGAAATGT ATTTTGAAATGTGTTTACTAGATattttttaaaacgatactgGTGTTTTA ACATACTAATCACATTGATTAATTATATACTACCGAATTTTGAAGGCACT AATTTCACAATATCAATATTCATGTTTATGTTATGAATTAAACCCTTATT TGAAATACTGtcttttataactttttatacTTTTCAGATGTTGTTGCTGG CGATCTTGTTTCTGTATATTGTGACGTAAAAAAGAAATGTCGAAAAGGAT TTACAAAACATTTTGATGGTGAAAAATTCTATCTTGGTAATGGTAAAGCC CTATTCAGTCGTTGGCAattatttgaagaaaatgatgTCGACAAAAATGA TGTTTGGTAAATAATTTTGATTGCAATTTATTTAGCATCACAGCTCAATA TTTCTGAGCTTGCTAACATTTTAGAGATTTCGGGGTCAGAATACCTGGTC TGGCTTTGTATTTGCATTGCTTTTGGgattacaaaaattgaaaacatacC AAAACTATGGCGCATTATCCTTGTAGTTTGATCccttttaccttattttg atttcttttaattttgcttattcattttaacttttatattcAGTGGTGTT GCAATAAAGATGGGTGAAAGTAAATTCAATTTACCAAGTTTTCACAACTT GCAACCAGATTTGTTTTTCCCACAAAACCTACCCTCCATAATAGTTGGTC ATTTGCTAGACATTGAAGAAAATGATTTGGTATTAGACATGTGTGCTGCA CCAGGTAGGTAAAACCGCTCTCTCTATTCATACTGGACCATAACTATGCC AATGTCAAGCTATTTCGAATGTCAAAATCTTCATTAAAGCTGGCACATAA TTTCTATGTCAAAATATGAATTTATGCGTTTGTGTGGTCGTTCTTTATAC AAATTTTAATGTAATACTTCGATTTTCGTAACGAGGGTGGTCATCAGAct gagaaaagaaaaatcaaaatcacaaaTATCTAGCGTAAAAATTACCTTGT TCTTTCTTTGTTGCTGAAAGATGATTGCCATTTATATATACTTGGTACAT AAGTCAGTTCAGCAACAAGGGGCGAAACTGAGCTACTTATGTACCCTTAC AATGTGTATGTCGGATGGAAATAGTTATTTAGGGGTGTGGCATTTGGTTG ATGGATGCGTAGTAAGTGGTAGTTTTTACACTAGGTATGGATAGTGGTAG TATTCGAGCATGTGTTTTGAGCCATTTCTATCAATGATCTTTACCATTGA TTTTGTcgtatattttttctttggattggTTTCGCTAGTTTTGGGTTCAG CTGTTAAACCTTTTATTTTAGAAAGGTGGGGTTTGGCCTTCATTAACAGT TCTGCATTGCTTTCTTCATATTCCCTTGACATTTTAAAATTGTCTTTATG TTTACGTTTTTATCGAAAGATTAAATATTCCACTTTTTTACAGGAGGGAA AACATCACACTTGGCTACATTATTGAGAAAGGTAAATTCAGCACAATTTC TTTTAGATCttggcaaaaatattttaaatgtgtttttcaaaagataatga agTAGCCACAAATTCTTTAATGACTGTTCTgttaaaaacttaatttttta tatcaattttaggGCAAACTAATATCAATagacaaaacacaaaataagGT GGATAGAATCAAAGAAAATCTCCGGAAACTCAAATTGAATAATGTTGAAT GTCATTGTTATGATAGCACGAAGATCCTATGCAATGAAGATGAAAGTAAG ATCATGTAGATATTCTGAAACTCTTTTTTCACAATTGAATTGAGGCATTG TTATATTTTTCTTGGACCCTTTAATGAGTATGAATTGAGTTAGGTAGAGA AAAAACTTAATTAGTTATCGGGCACTAGCTCTGACCTCAATTGACAGATT TGTCCTCAAAAATCATTGTCAGTTGAAGTCCAAAATTCCTGGGttggaaa tgaagccacttatttcccatcccaAGCACGTGACTAAGCATGTTTtcaca caaaatttctaaatgtgGGGAAATCCTAGCCAATCTTAAAGCTTTAGTTT TGGTTGCTTGAGAAATgttgaagattcatctctagACCCTTCTAGGATCC AAACTCAATGGTGGAAACATCTTTCTGGCTTGTCTTATGTATATAACTCT TgatatgaaaaaatttcttctttttagatgaaagtgacgaaaatggcCCA CCATTTCCATCATCTACATTTGATCGGATTCTTCTTGATCCACCTTGTAG TGGTTTGGGACAAAGACCACAATTACGTTACACATTCAGTGATAAAGAAC TGGCTTCTTATccaattcttcaaaagaaattcttcaaacAGGTAAATCTT TGGATTAGTCTCAACTCTTATTTTTGAAATGTTAAGCTTGCTGGttctga aaatgtttttaaaaagggTTAGTTGGTAGTTCctgattattttctttaat cTCGGGGTCtgttgttttgaatttattctTATACCGTCAaatgctctaac ttgggactacctgacaaaacatgggacggcaattcggccaccatttcacc gaacctccaaagtcatttgatttgagttaaggaacggtatatttaaaaat acacaatttctctttcgattttacagtcagtgaaaatacagaccagatat gcaacagtcccatgtttcgaccaatcgtcccaagtaagagcagttgacgg tactatGACTGATAAAACAGACGTATTAGATTGTTATCTAGCTTAAAGCT GGAGTTTTTTTTAAGTTGACAGAAACCTTTCCTCGACCACTTCTTTTGTC TCTTTAGGCAGTTCCATTACTGAAAACTGGCGGGACACTTGTTTTTTCAA CTTGTACTTTATGTCCAGAAGAAAATGAAGCTCAAGTTGCTTGGGCATTA CAATCGTTTTCTGATTTGTCACTGGTTGAACAAGTAAATGCTAAATTTTA CtgaagcaaaaaagtttttatccaGAAAGTACTTTTCAAACCTTTGAAAC CACTTTTGTGCCTCAAACTGACACTAATGGTTACTCAATTTCAATTTGGG TCAATTTTTGATTAAATTGaataatttctttgaaaatgtttcgACTCATA TTGAGAAGGGGTAGGATTAGGGTGTAATCAATGATTTTTGTTTGACCGGG ATTGAGGAAGTGTTTATAAGCAGGAAGGGTATTATAAGGATCAGTGGTGG TAACAGAGTGAGACAGGGCGCTCAAATACTCAAAACAGCTCAAAAAAAGT TGTCTAGCCCTATCTAATTTTTTCATAATGACTAAAAGAAGCTCTTGTTT AATTTCAGGAAATACGGATAGGAAGCATTGGTTTGGCAGGTTATGGTCTT TCAGATGAACAACGAGAAAAAGTGCAGCGGTTTGATGCTGTTTTTAACAA CTATACAAGAACTGATATTTATAATGACTCTATTGGGTTTTTCATAGCTA AATTTGTTAAGAGGGAAAGATGACAAAAACTAAAGATATTTGTTCTTAAT TTAATCGTACTCAAAATTGTGTAACCATTCAAAAATGAACATGAACATTT ATGATGTCTGGTATATGCAAGGCAGTTTTAGTCGAATTGCTTATCAAATA AGTATTTACGTATGaatgaaattcagaaaaaataaaacgAATTGGTTCAA TAACTATTTACATTACATTTTGCGATGataccaacaaaaacaacaacaaa aatttttgaataattacATATTGCTTCTTAACATTTCACTTCTTGGGTGA TGTTTTGGTGTTTTCGTCACTTGGAGGTGAATGAAGACGCGCAACTTCTG AATCTGATGTCTAGAAGAATA

Coding sequence (CDS) from alignment at scaffold_60:1596702..1602772+

>TCONS_00071308 ID=TCONS_00071308|Name=TCONS_00071308|organism=Clytia hemisphaerica|type=CDS|length=1383bp|location=Sequence derived from alignment at scaffold_60:1596702..1602772+ (Clytia hemisphaerica)
ttagcttttataaaagtagaaatttataaaaaagaaaaggaagattTGTC
GAAGACCAAAATAATAATGGATGTAAACATATCAGAAAATGTCCTTGAAA
AATTAAGTAATCTTTACAAGTTGAAAAAGgatgaagttaagaaaattctt
tcaacaccACCTCAATCAGCAGTTATAAGGGTcaatataaatttgataaa
tataAATGATGCTATTGAAGTTTGCAAATCCTTTTTAAAGAACTGTGACA
CTCATTACTCTGTCAAAATTCATCCACAAATCAAAGATGCATTGATCATT
GAACCAAAGAACTTTGAAAACAAACCAGAACCACTACAGAAAGAAATCAT
TGTTGATTCTAGTTGTGGTACAGCTGTTCTTAGAGGAGCTGATATCTTTG
TACCTGGAGTATTAGCAGCAAATTCAAATGTTGTTGCTGGCGATCTTGTT
TCTGTATATTGTGACGTAAAAAAGAAATGTCGAAAAGGATTTACAAAACA
TTTTGATGGTGAAAAATTCTATCTTGGTAATGGTAAAGCCCTATTCAGTC
GTTGGCAattatttgaagaaaatgatgTCGACAAAAATGATGTTTGTGGT
GTTGCAATAAAGATGGGTGAAAGTAAATTCAATTTACCAAGTTTTCACAA
CTTGCAACCAGATTTGTTTTTCCCACAAAACCTACCCTCCATAATAGTTG
GTCATTTGCTAGACATTGAAGAAAATGATTTGGTATTAGACATGTGTGCT
GCACCAGGAGGGAAAACATCACACTTGGCTACATTATTGAGAAAGgGCAA
ACTAATATCAATagacaaaacacaaaataagGTGGATAGAATCAAAGAAA
ATCTCCGGAAACTCAAATTGAATAATGTTGAATGTCATTGTTATGATAGC
ACGAAGATCCTATGCAATGAAGATGAAAatgaaagtgacgaaaatggcCC
ACCATTTCCATCATCTACATTTGATCGGATTCTTCTTGATCCACCTTGTA
GTGGTTTGGGACAAAGACCACAATTACGTTACACATTCAGTGATAAAGAA
CTGGCTTCTTATccaattcttcaaaagaaattcttcaaacAGGCAGTTCC
ATTACTGAAAACTGGCGGGACACTTGTTTTTTCAACTTGTACTTTATGTC
CAGAAGAAAATGAAGCTCAAGTTGCTTGGGCATTACAATCGTTTTCTGAT
TTGTCACTGGTTGAACAAGAAATACGGATAGGAAGCATTGGTTTGGCAGG
TTATGGTCTTTCAGATGAACAACGAGAAAAAGTGCAGCGGTTTGATGCTG
TTTTTAACAACTATACAAGAACTGATATTTATAATGACTCTATTGGGTTT
TTCATAGCTAAATTTGTTAAGAGGGAAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044315XLOC_044315Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071308-proteinTCONS_00071308-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071308-exon-scaffold_60-1491911889:1596702..1596831TCONS_00071308-exon-scaffold_60-1491911889:1596702..1596831Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1596702..1596831TCONS_00071308-exon-scaffold_60-1510915933:1596702..1596831Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1596702..1596831TCONS_00071308-exon-scaffold_60-1575043694:1596702..1596831Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1597506..1597616TCONS_00071308-exon-scaffold_60-1491911889:1597506..1597616Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1597506..1597616TCONS_00071308-exon-scaffold_60-1510915933:1597506..1597616Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1597506..1597616TCONS_00071308-exon-scaffold_60-1575043694:1597506..1597616Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1598728..1598914TCONS_00071308-exon-scaffold_60-1491911889:1598728..1598914Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1598728..1598914TCONS_00071308-exon-scaffold_60-1510915933:1598728..1598914Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1598728..1598914TCONS_00071308-exon-scaffold_60-1575043694:1598728..1598914Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1599139..1599307TCONS_00071308-exon-scaffold_60-1491911889:1599139..1599307Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1599139..1599307TCONS_00071308-exon-scaffold_60-1510915933:1599139..1599307Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1599139..1599307TCONS_00071308-exon-scaffold_60-1575043694:1599139..1599307Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1599545..1599705TCONS_00071308-exon-scaffold_60-1491911889:1599545..1599705Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1599545..1599705TCONS_00071308-exon-scaffold_60-1510915933:1599545..1599705Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1599545..1599705TCONS_00071308-exon-scaffold_60-1575043694:1599545..1599705Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1600395..1600432TCONS_00071308-exon-scaffold_60-1491911889:1600395..1600432Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1600395..1600432TCONS_00071308-exon-scaffold_60-1510915933:1600395..1600432Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1600395..1600432TCONS_00071308-exon-scaffold_60-1575043694:1600395..1600432Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1600564..1600696TCONS_00071308-exon-scaffold_60-1491911889:1600564..1600696Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1600564..1600696TCONS_00071308-exon-scaffold_60-1510915933:1600564..1600696Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1600564..1600696TCONS_00071308-exon-scaffold_60-1575043694:1600564..1600696Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1601129..1601292TCONS_00071308-exon-scaffold_60-1491911889:1601129..1601292Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1601129..1601292TCONS_00071308-exon-scaffold_60-1510915933:1601129..1601292Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1601129..1601292TCONS_00071308-exon-scaffold_60-1575043694:1601129..1601292Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1601759..1601884TCONS_00071308-exon-scaffold_60-1491911889:1601759..1601884Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1601759..1601884TCONS_00071308-exon-scaffold_60-1510915933:1601759..1601884Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1601759..1601884TCONS_00071308-exon-scaffold_60-1575043694:1601759..1601884Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1491911889:1602260..1602772TCONS_00071308-exon-scaffold_60-1491911889:1602260..1602772Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1510915933:1602260..1602772TCONS_00071308-exon-scaffold_60-1510915933:1602260..1602772Clytia hemisphaericaexon
TCONS_00071308-exon-scaffold_60-1575043694:1602260..1602772TCONS_00071308-exon-scaffold_60-1575043694:1602260..1602772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1596702..1602772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4576 8.51848 4.00906 3.25133 1.85343 1.52754 3.92968 4.40693 4.25631 4.3648 3.23328 3.38207 3.19122 3.99919 4.73384 5.20315 3.89965 4.36296 1.83244 2.12051 5.24776 4.58105 18.1346 13.9625 4.05169 6.00441 2.165 2.1476 7.702 9.694
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023267RCMT
IPR002478PUA
IPR001678MeTrfase_RsmB/NOP2
IPR029063SAM-dependent_MTases
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003723 RNA binding
Blast
BLAST of TCONS_00071308 vs. Swiss-Prot (Human)
Match: NSUN6 (Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.003e-102
Identity = 176/383 (45.95%), Postives = 239/383 (62.40%), Query Frame = 2
Query:  272 HPQIKDALIIEPKNFENKPEPLQKEIIVDSSCGTAVLRGADIFVPGVLAANSNVVAGDLVSVYCDVKKKCRKGFTKHFDGEKFYLGNGKALFSRWQLFEENDVDKNDVCGVAIKMGESKFNLPSFHNLQPDLFFPQNLPSIIVGHLLDIEENDLVLDMCAAPGGKTSHLATLLR-KGKLISIDKTQNKVDRIKENLRKLKLNNVECHCYDSTKILCNEDENESDENGPPFPSSTFDRILLDPPCSGLGQRPQLRYTFSDKELASYPILQKKFFKQAVPLLKTGGTLVFSTCTLCPEENEAQVAWALQSFSDLSLVEQEIRIGSIGLAGYGLSDEQREKVQRFDAVFNNYTRTDI---------------YNDSIGFFIAKFVK 1372
            HP ++D L+I         +  Q E IV + CG AVLRGA ++ PG+++A+  + AGD++SVY D+K KC+KG  K FDG K +LGNG +  SR ++F        ++ G+ I+M E  +  PSF ++ P   F QNLPS +V H+L+ +  + +LD+CAAPGGKT+H+A L+  +G++I++DK  NKV++IK+N   L LN++   C+D TK +   D  E  E  PPF   +FDRILLD PCSG+GQRP +  T+S KE+ASY  LQ+K F  AV LLK  G LV+STCT+   ENE QVAWAL  F  L L  QE +IG  G+ G GLS EQ +++QRFD        TD+                 DSIGFFIAKFVK
Sbjct:   89 HPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKKG-AKEFDGTKVFLGNGISELSRKEIFS----GLPELKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAV-KLDMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465          
The following BLAST results are available for this feature:
BLAST of TCONS_00071308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSUN69.003e-10245.95Putative methyltransferase NSUN6 OS=Homo sapiens G... [more]
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