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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071400 ID=TCONS_00071400|Name=TCONS_00071400|organism=Clytia hemisphaerica|type=transcript|length=1847bp
CTTTGCTGGTCTTCGAATTATTATTTGGTGTAAagacattttactgacca
aataAAGGCTGTTAAGGAGTGGCTACATCGTAACAACCTAAGGTACCTTT
GAAGGCATCTCAACCAATCATGTCATTCTTGACAGCAAATCCTACTGAAA
ACAACCATCATAAAAGCAGAGACGAAGAAATGAGAACGTTATTCCATTCA
CTGAATCACGATATTCTACGACAGCAAATCTACGATCCACCGACACCGCC
TCTTACGCCTGAATCACCTCTTCATACATCAACCAATCATTTGCCATCTT
TAAGAAGTCCTACATCCAGTGAACCAACATCAACTTTCATGCCGCGTTAC
ACGAGATCACAATCATACACGGTGGACGCCCATCCTCGCTACACGCATAC
ATCACAGCACACTTCGTGTAAATGCTGCCCTCGTCCCTACACTAACGCCC
ACCAACCACGTGACTATTACCGACGCCCTTCAACTCATCTTTATCCTTCA
TCATACAAGCACCATTACACGCCTTCAACAACAGATATCGCGCCATCGCA
TCCCGCCTTCTCACCCACAACAACCGCCACGAATTTAAAACGAAGATTCG
AGGACGAAGATTGTTTCCCTCCTGCCAAGAAAATGAAACTGATAAACGAA
GACGGCGACAATGGCAAAGATAACCCGCAAAAACATAACAGAAATGAAAA
AGGACAACTTTTGAATACTCGTAAAATCGCATGTCAAGTTCAAGGATTAC
TCAGTCTTCCTGGAGCTCGTGAACCAAAGTTCGATATTTCACAGAGTGAG
CTACAGCGACGCGTTAATGAACCAGAATGCCTCACCAAAGTCGATATGAT
TTCTTACGTACGTTTAGCCAAAAACACGGCACGGAATTTACTCGACCATA
ACGGGATCCGTACCAATCAACATAATAAACGATCAGCGCATACCGTTCTA
TCGCGCATGTGCGAATCAGAATGCCAAGTTTTGGCACATGGTATCAATGA
TATCAATATGAAATATTTCCCCAGACATTGGTTCGCCAAGAAATCCGTGC
AAGAGATCTTATTGGCTGAAGAATCGTTAGAAAATCCTCTATCACCAAGA
CAACGACAAATGCTTTTACGTGAACGAATCGAACAAACGAAAAACGCTAG
GTGGATGTTTTTGGATTTCATCAAAGGCCTCGAACGACGTGCTCAagatg
atgaaatgaaaacatTCAATTTGATGTCGCATACTTTTGGTGTTTCCAAC
TTGATCAATCATAATTTATTCATGTTTCATTTAATGGAAGAAGAACTTAA
AGTTTTGCAAAGTTATTTGTGAAATCTATATCGTTCATGGATTAAATTAT
TGGTTATTCTAGTTTAGTTATTGAATCAGTTTCGATTTATATTTTGTTTC
TTAACCCCGTATTTTGTAGACGAACATAGTACACTATTTTCTTTCGAAAT
TTGACTTAGTGTAATCCAGCCTTTaatatttctattttcttaTCCTTTGA
TTCCAAGAGACATGGAATTAGAGGTTGGATAGAAATAATAAGCACACCCT
TTATTTAAGATCTTGTGTAGTTGCCTAAGCTGTTTTTTTATCCCACTGGG
CAGTTGCCACTGGGTAAAGAAACTTTGAATATTCCTTGATGCCCTTTatt
ttgaacattcatattatTTTCATGTTATGTTTCATGTTATTTTATGCATT
TTATGCATCTTGTATAATGTCTTATTATATTGAATTAATTATATACTGTT
GTTGTATTATAGTAAGACCTCTGGTTCGGTCAAATTTGTTATTATTAAAG
TTATTCCatgtaattttttaattctttgttgtttataTTTGAATAGG Run BLAST on NCBI transcript from alignment at scaffold_60:1193343..1199447- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071400 ID=TCONS_00071400|Name=TCONS_00071400|organism=Clytia hemisphaerica|type=transcript|length=6105bp|location=Sequence derived from alignment at scaffold_60:1193343..1199447- (Clytia hemisphaerica)
CTTTGCTGGTCTTCGAATTATTATTTGGTGTAAAGACATTTTACTGACCA
AATAAAGGTGGGTTGTTCTTTTTTTTCTCTTTCCGTTCCAAGGAATGAGA
TGTTCCATGAAATTTCCATACAGGGGGGTGGACAAACCTTTTCAAGTGAA
GAAAAATTTCTCGGAAAATTGTAGATACCCCTGGAAAATGGCAAAATTCG
CAAAAGAACCCTTGGAAAAAATTCTTTTCATATCTTAAAGTGATGGTACA
CGAACTAAAACCAGTCGTTCACCCCCTGGAAATTCACGAATAACTTTTTA
CCCCCTGGAAAAATGTAAAAAATATTCGGCCACCCCTCCCCCTGTATTGT
CATAATTATACACTTATAGGCCTGTCGTCGGCGAAATGGCCTTTGACTTA
ATTAATTTAACTGTGCTATTCTCTCTTTCCGTAAAACGGTGGATAACGTG
GCCGTAAGGGGAGAGCCAACGCTTAAGTGATCTATAGTAGATCTGGTCTG
GAAAATTACATATCTTATTATAAGACCATCCAAAATTTTTGAAACCTTCA
GATCTTCTTATCTATTTGAGTTTCAAGCCTAAAAATGTTCTTAAATTTTG
TGCGTATTTTGTGTACTTTTCTAAGAAAATAGGTGTTTTAAAGCCATAAA
GCCTTAAAATATTCTTAACTTCTTAAAATTTTGTTCATTCAAGTCTAATG
CTCTTATATAGTTTGTTTCGTCAAACAATTTCAATTTTCACCAAAAATTC
GAATAATTACATGTAACGGGAAAGAAGTTGTTACCAGTCAGGTTAGGTAA
CTACACGTTTTTCTCTAAGAACATCCAAAATGTTTCGAAGCCTTCAGATG
TTCTTAACTTTTTTAGTTTTAGGCCTAAAAATGTTCTTAAAATGTTCTTA
TTTTCCCCATTTTGTGACCATTTTTACCCATTTTCCTTAAAAATCGGGTG
TTTTCGAGTCCGCAAAGTCTTTATATGTTCTTACCTTGTTCTTAGCATTT
TAGCCTTATGTTCTTTTATAGTTTGTTCTTTAAAAAAACGTGTATTGCCT
ATTGGTATCAAAAACATAAGTCTTAGTTTAATTTTTGTTTATGACCTTCA
AGCCACCTCAGATGAAATAAGCATGAGACCAATAAAACCTGAAAATTTCG
CCAAAAATTAAAGAGACCGAAATTCATTTATCCATTTATCCCAGAGTGTA
ACGTATAACGTATTGTCTATCTCCATCAATTATGAAATTTGAAATCTCTG
TAGATATCTGGATCATCTAAAGTGAGCTAAAATTCTAGCTAATTCTGAGC
TAAAAAAGAGTTTCGACTCTCGACTTTTCCTTCTAACGTAGTGCAACAAA
AGCTTTTGTACCTTGAGAATTAAAGTTACTATGGTGGACTTCTTATGTAT
CTCCTAATCTTTCCTTATGGTAAAACATTGTCCTGTCGTATCTGCTTTCA
CATACTGTCATTTTTACGAAATTTTCACCATACTGAGGTCTTAGGAAAAC
ATTGCTTAGGCTAGAGAGGTGCTACGTGTTATCAATGTAGTTAAATGTGT
GAACTTCTGGGTTGATAAAATGTTAGCAAACCTTTTTATCACCTTCTTAG
ATATTTTGAAATATTTTGAATTTATGTTTTTAAATAAAATTAAGATTCTA
TTAGATTTTTCAAAAAGCATTTTAAAGGTTAATTTTCTAATTGCGCCGAC
TAATTTTCTAAAGTCGAGCGAGGTGGTGACATAATTTGTCCATGTTGTCA
GTCAGTGGGTGTGGTATTTCTATTCGTTCGTTCAAAGATAGCCAAGTCGG
CAGCTTGCAGCCCCATGAAAAGTATCAAAAGACTGTGTAAAAGTCCTAAA
TTTACTGGGCTCACCGCGTAATAAATATCGACTATATACCTCAGTAAATT
TTGTTGATAGAAATTTGATAGAACTTATATTCGTGTTGTATAGTACAGAA
TCGTTTTATTTGCGGCACATCTCGTTAATTGGATAGTTTATCCTAAAGGA
TTCATTATCTTTACTAATTGCTCGATAATTTCTCCAAAAACGGCTCCAAG
TTTATCCCTTTATTACATGTTGTGACTTTCCCTTTGTCTCTTTACCGTAA
ACAAAAGATAAAGGGTTTGGACCGAGTGATCGCGTGCAAGATATCTTGCG
AATGTTTTAAAACGGATCCTAGTTCTCTCTGATTTGGAATGCCGCTTTTG
TCATCAAAAACGGGGGTTTTTATTTTCTATAAATTAACATAAATATTCTA
AGCTTAGTTGCCCCCCTGCTTGATAAATTTCCTTTTTTTAAATTATCAAT
AATACGAAAATTGCGCACTATTGTTTTTTAATGGTTTCGACAATGCATTG
GCTAATTATGATTTTGTTTGTTTGTGTCACATGACCCGGTTTGTTGAAAT
AAGAGTCATTAAGGAGACAATGGGATAATATATTTTTATTGTTTTCTTTT
GTGATGACAAGAATTAAATTTGCGGTTGGTGTTTTTTTTTCATAAAAGAG
GGTCTGAGCAATAGGTGAAGTAAGCACTTTTGATTTCTCTTTAGGCTGTT
AAGGAGTGGCTACATCGTAACAACCTAAGGTACCTTTGAAGGCATCTCAA
CCAATCATGTCATTCTTGACAGCAAATCCTACTGAAAACAACCATCATAA
AAGCAGAGACGAAGAAATGAGAACGTTATTCCATTCACTGAATCACGATA
TTCTACGACAGCAAATCTACGATCCACCGACACCGCCTCTTACGCCTGAA
TCACCTCTTCATACATCAACCAATCATTTGCCATCTTTAAGAAGTCCTAC
ATCCAGTGAACCAACATCAACTTTCATGCCGCGTTACACGAGATCACAAT
CATACACGGTGGACGCCCATCCTCGCTACACGCATACATCACAGCACACT
TCGTGTAAATGCTGCCCTCGTCCCTACACTAACGCCCACCAACCACGTGA
CTATTACCGACGCCCTTCAACTCATCTTTATCCTTCATCATACAAGCACC
ATTACACGCCTTCAACAACAGATATCGCGCCATCGCATCCCGCCTTCTCA
CCCACAACAACCGCCACGAATTTAAAACGAAGATTCGAGGACGAAGATTG
TTTCCCTCCTGCCAAGAAAATGAAACTGATAAACGAAGACGGCGACAATG
GCAAAGATAACCCGCAAAAACATAACAGAAATGAAAAAGGACAACTTTTG
AATACTCGTAAAATCGCATGTCAAGTTCAAGGATTACTCAGTCTTCCTGG
AGCTCGTGAACCAAAGTAAGAATTGTTCTTTTTTTTTTCATTAAATGTTA
ACTATGAAAAGTATAGCGCGCATAGGCTCGATACAAAACAAGGACGCAAC
CGAAAAACTTTTATAGTCTAGAATTCAGTAAGTATCTGTGTCACTGAATA
TACATCGCCGAATTTTTTATCAGACCTGGCTAGTCTGGAAAAGTTAGTCT
AGTCTATATTTTTTACCAGTTTTTCTCAAGAATTCGTCAAGTGCGACATC
CTTTGTCCAGTTTTGTCTCGCCAGTTTCGTTGCGGCTAGACTAACCACAA
AATCTCATTTCGATACTGAAAAGTCATGTTCCTCTTTTAATACCACGACC
GCAACAACAATCAAGACATGATTTTTGGGACAGAAACATAACAAAAATGC
CTCTTACAATATCTTGTCTAGAATTTTTGTGTAAGTAGCTTGTTTTCTGA
GGGTTTCTTAAGGCTGTCTATTGAACTTTGTCAATCATTTAAGTCACGCA
TCGATTTGACCGCTAGTGACTGGCTGGATTTATTTCAAGTGTTTTTCTTA
CTTTATATAAAAGTGTCCGCCACAGTCTTACAAAACTTGTTGAAAGTTCA
CACACATGATGCTATGAGAATCTTAATGTCTAGACTAGAGTGTAGCAGTT
ATACATTGACGTCAAGGCTAATTTAATTTTAAAAAAGCAAGATTTTTTTG
CGCTCTCTAAATTTTCCTGACTAACGAGTGTAAATGGCTTTGAAATTCTC
CGCACGCTATTTTCTCCATGTTTATACTTCGATATTTTCAACAAATAAAA
CGTTGATCAATTTCTTGGATAATTTCTTATGAATGGAATCTTTTAAATAC
TTAACTGTGTCATCCTATTAAAGGGTATCATTTAAGGTCGTCATCCCATT
TGCTAACACAGCATTTTTGAATAAAGAAATCCCGCGCCGCGCCGCGCGTG
CACAAATTTTGAGAACTACTCTCCGCTTTGAAAGCATAGCATAAAAATAT
CTTTAACTGCTTTTCTAAAGGTGTATCAAAATGGACTGGGTCGGAAGTTA
TCAGTTTCAATTTCATCGAATGTCTAGAGGTTGCTGCATTTGCCCCTGAC
AAACTCGGTTCTACAACTCTTTTATGATGGGATGGGATGTTGAGTCACAT
TCTGTATATCATTACATAATGTTATGCAACATATTTTGTATTTTAAAACT
AATCCCTGGATTTTTTAAATTGGTGAGAACATTGTAAGTCCCTTCAGCCT
TTCGAAGTCGAGGAAGCTTCTTTTCCCTTTATTTTTTATTACATCTTCAT
TACATAATTTGTCATGCTTTTATTTTTAGGTTCGATATTTCACAGAGTGA
GCTACAGCGACGCGTTAATGAACCAGAATGCCTCACCAAAGTCGATATGA
TTTCTTACGTACGTTTAGCCAAAAACACGGCACGGAATTTACTCGACCAT
AACGGGATCCGTACCAATCAACATAATAAACGATCAGCGCATACCGTTCT
ATCGCGCATGTGCGAATCAGAATGCCAAGTTTTGGCACATGGTATCAATG
ATATCAATATGAAATATTTCCCCAGACATTGGTTCGCCAAGAAATCCGTG
CAAGAGATCTTATTGGCTGAAGAATCGTTAGAAAATCCTCTATCACCAAG
ACAACGACAAATGCTTTTACGTGAACGAATCGAACAAACGAAAAACGCTA
GGTGAGTCTTATTATCTTATCAGACCTGCTTAGAATCAAATGGAAATTTT
GTTTCTTTTTACTCAAACCTTAATTAATTCGAATCTTTCTTTGATTTTAA
CCAAATCACTGGTCCCATTGTGTGAAATACGCTGAAATACGAAATTAAAG
TCTAATTTCAAGTCTTATCTAATTCGAAGACAAATTTAGTCCCTTTGACG
TCAAACTAGAGAGATAGTCAATCTGTACTGTTAAAACTCTGAAATCCTCA
TAAAAAAGATGTCTAAAAAGTTTGTCAGTTTTTCTACCGACTGCTTATCC
ATTTTTGGCAAGGTATCTTGTTGTTTGCTGCAATTTTATTCTAAGGAGGC
TCTCTTGGAGGTCGAGTTAGAGAGAGTCGAATGAACTTTGAGATCTGAAA
TCATAATAAAGATAATTAAGATAAATATCATTACCGTTTTTTACTTTCAT
TTTTCTAGGTGGATGTTTTTGGATTTCATCAAAGGCCTCGAACGACGTGC
TCAAGATGATGAAATGAAAACATTCAATTTGATGTCGCATACTTTTGGTG
TTTCCAACTTGATCAATCATAATTTATTCATGTTTCATTTAATGGAAGAA
GAACTTAAAGTTTTGCAAAGTTATTTGTGAAATCTATATCGTTCATGGAT
TAAATTATTGGTTATTCTAGTTTAGTTATTGAATCAGTTTCGATTTATAT
TTTGTTTCTTAACCCCGTATTTTGTAGACGAACATAGTACACTATTTTCT
TTCGAAATTTGACTTAGTGTAATCCAGCCTTTAATATTTCTATTTTCTTA
TCCTTTGATTCCAAGAGACATGGAATTAGAGGTTGGATAGAAATAATAAG
CACACCCTTTATTTAAGATCTTGTGTAGTTGCCTAAGCTGTTTTTTTATC
CCACTGGGCAGTTGCCACTGGGTAAAGAAACTTTGAATATTCCTTGATGC
CCTTTATTTTGAACATTCATATTATTTTCATGTTATGTTTCATGTTATTT
TATGCATTTTATGCATCTTGTATAATGTCTTATTATATTGAATTAATTAT
ATACTGTTGTTGTATTATAGTAAGACCTCTGGTTCGGTCAAATTTGTTAT
TATTAAAGTTATTCCATGTAATTTTTTAATTCTTTGTTGTTTATATTTGA
ATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071400-exon-scaffold_60-1575043694:1199391..1199447 | TCONS_00071400-exon-scaffold_60-1575043694:1199391..1199447 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1575043694:1196183..1196903 | TCONS_00071400-exon-scaffold_60-1575043694:1196183..1196903 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1575043694:1194497..1194868 | TCONS_00071400-exon-scaffold_60-1575043694:1194497..1194868 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1575043694:1193343..1194039 | TCONS_00071400-exon-scaffold_60-1575043694:1193343..1194039 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1510915933:1199391..1199447 | TCONS_00071400-exon-scaffold_60-1510915933:1199391..1199447 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1510915933:1196183..1196903 | TCONS_00071400-exon-scaffold_60-1510915933:1196183..1196903 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1510915933:1194497..1194868 | TCONS_00071400-exon-scaffold_60-1510915933:1194497..1194868 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1510915933:1193343..1194039 | TCONS_00071400-exon-scaffold_60-1510915933:1193343..1194039 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1491911889:1199391..1199447 | TCONS_00071400-exon-scaffold_60-1491911889:1199391..1199447 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1491911889:1196183..1196903 | TCONS_00071400-exon-scaffold_60-1491911889:1196183..1196903 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1491911889:1194497..1194868 | TCONS_00071400-exon-scaffold_60-1491911889:1194497..1194868 | Clytia hemisphaerica | exon |
| TCONS_00071400-exon-scaffold_60-1491911889:1193343..1194039 | TCONS_00071400-exon-scaffold_60-1491911889:1193343..1194039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1193343..1199447 - |
Blast
The following BLAST results are available for this feature:
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