TCONS_00071443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071443
Unique NameTCONS_00071443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length996

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071443 ID=TCONS_00071443|Name=TCONS_00071443|organism=Clytia hemisphaerica|type=transcript|length=996bp
gaaaatttcaaagcaaaagaaAGCTGGATCTGCTGTGGAGAAAAGGAAGA
CAGAGAAAATTTACAACCAAGGATGATCATCTGAGCTGAGGCATTGAGTT
TTTAATATGGCACATCAGAAGGTTGATGTCAAGGTTGTTTTGCTTGGAAA
GGAATATGGAGGAAAGACAAGTCTAGTTGAACGATATATTCACGAGAGGT
TCAATTCAAATCAGCCTTACCAAAATACAATTGGAGCAGCCTTTGGGGCA
AAAACATTACACATCGATGGAAAATCAGTAACACTTGGGATATGGGATAC
TGCTGGCTCTGAGAGGTATGAAGCGATGAGCAGAATATATTATAGAGGTG
CAAAAGCTGCCGTTGTTTGTTTTGaTTTAACGGATGATAATAGTTGGGAC
AGAGCAAGATTTTGGATTCAAGAAGTTCATGGGCATGAAGAGGAATGTAA
AATTTATCTCTGTGGAACTAAACGCGATTTATTGGAGCACCAAGACCGTG
CAATTGACTATCACGATACAACTGATTATGCAGACACCATAAGTGCAAAG
CTATTCGAAACTTCAAGCAAAACAGGAGAAAATATTGAGGAACTGTTCAC
TGAGATTGCAACTGAATATATGAAAATTGGGATGCCAAGTGTTGAGGATC
CAAACATTGTGAATATGAATCAACGAACAACACAGTCTGAAGGTGGCTGG
AAAAAATCATGTTGTGGATgatattcaaattcaaattagtCATAAGTGTT
ATGTGTTCTAGAACCTCTGGTATAACGAGATGTCTGTCCTGTTTCACCTT
CAATACAGTGAAATACACGTACTTTGAAGATTTAGTGCATTTCAAAAGGG
AACTTTTTAGTGAAGTTTCTTAATTTCTCTGATTTCACAGCCAGATAAAC
TAGTTGttgtttagaaaaaggggttacgcgcgctccagaacgcttaagta
cgttcctccactctgtttgcatagcaaagacatgtGAGAGTGACAA
Run BLAST on NCBI

protein sequence of TCONS_00071443-protein

>TCONS_00071443-protein ID=TCONS_00071443-protein|Name=TCONS_00071443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MAHQKVDVKVVLLGKEYGGKTSLVERYIHERFNSNQPYQNTIGAAFGAKT
LHIDGKSVTLGIWDTAGSERYEAMSRIYYRGAKAAVVCFDLTDDNSWDRA
RFWIQEVHGHEEECKIYLCGTKRDLLEHQDRAIDYHDTTDYADTISAKLF
ETSSKTGENIEELFTEIATEYMKIGMPSVEDPNIVNMNQRTTQSEGGWKK
SCCG
Run BLAST on NCBI

transcript from alignment at scaffold_60:1422749..1431551-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071443 ID=TCONS_00071443|Name=TCONS_00071443|organism=Clytia hemisphaerica|type=transcript|length=8803bp|location=Sequence derived from alignment at scaffold_60:1422749..1431551- (Clytia hemisphaerica)
GAAAATTTCAAAGCAAAAGAAAGCTGGATCTGCTGTGGAGAAAAGGAAGA
CAGAGGTAAGAAAGCAGAAAGACATTTATTTGACTGTTTGAGTTTTATGA
GTAACAAATTACTTAGCATTAGTCTTTAAAGACCAGTCTATCAGTTCTGG
ATGTTGCAGAAAACTTTAGCGTTAGTTAGCACTGGCATGTAAATTTTGTC
ATCTCACTTTCACTTTTCATGTAGCCTGGGAATCCATGCTATGATTTCTT
CTTTGATAAACTGATGGCGAAATGTATAGCATGGTACAGGCTGAGAGTTT
GAATTTCTCAGATCCTAATAACGGTTGAAAACATAGCCAATCAAATTTTG
TTATTCTTTTACTGGTCACACTTTCTTAGAGAAAGACGTAGAGAAAGCGC
AACTTTCGAAATTTGGTTTTTATTTAAGTAAGTGAGGACAGCGCTAAATT
CGAATTTCCCACTGTAAAAAATGTGAGTCCAATATTGGACTCACAGCTCG
AACCCGTCTTGTGTACATCAAATTACAAAAAAACACACGACGGGTCTCCT
GTCTAAAGTTTGTGCTGCTCCGCCACCGTATATTAGCATTTTTTTAAAGC
CAAATTCGGAATGTAAGTCCAGGTAAGTTGGGAATTTACTTCCGATAACG
GATTACACACTTTTCCTGTATCCTTTTAGCGCCAGAGGCGGTTTGTTGGG
CGTAGTATTCTGCCACTCGGCCGCACNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATTCAGTATGTGAATAGAGCATTAAAAAATACAACTTTTC
TATTTTTCCTTTTTTTTGCAAAAGTTCTAGGAATGAAAATAAAAGGATAA
TGATAATTGAATATATCCATTGATGATCCGCGGCACTATCGTAAAGCTAG
AATCACTTCGCGTACACTTGGCTTGAGAAAATGATTGACAGATTGAAGTT
TTTCATCCCCGCGGCGCGTGCCGCGCGGGAGCTCGGGCGCTATGCGAGAG
TTCTCGGCTCAATCCTCGGTTGATTGCTAAAAATGGTAAACTGAGCTGTG
ATAGATCATTTCGATGGAAGTTGTTGGAATGTTTACAAGGCTCTTGACAG
AAATTGAATTGAATTGAATTGAATTGAATATATTTTCGCTGCAACACAGC
AGGATAACCCCTTACAAAAAAGAATAGATTTCTCTAATACAATGGGGAAC
CTAGAAGAAAATGAAAAATTATTACAGAACTAAAGAAAAAATGAATAAAC
GATAATCATATCATAATATTAATAGTGACACAAAATAATGAATATAAGAA
ATATTTTTACTTTTATTTTATGAAATTTAGAAAAAATCGTTTGTTTCATT
GTCAATGATGACAGTGTGGTTATTAATTTTGTTAGATCTGACAAATTGAT
GTTTGTAAGTGCACTTTATAGTTTTGATTCCCATTGAAGAATCATATTCT
GGTTTTCATGTTATTAGATGCTGTTTTAGAGCTTTAGGTCTACACTGAAT
TATAAAAAAACACACGACGGGTCTCCTGTCTACTTTTCATGTAGCTAGCT
AGATCCTTTAAAAAATTTAAATTTCTGCTCTCCTTAAAATGATACACCGT
CATCGTCTGGGGTAAGATTCCACTTCCTGCACTAAGATTCCATACACCGA
AAAGTACCGTGAGATCGGGTAACTTCAGTTAGGCACATTTAGCGAGTTCC
TGTACCCGGCCGCAATCAATAAAATCATAACATCACTCATTAAAAAACGG
CGTTCGTGTCTCTTTGCACTTTTTTTAGCCTAGACGATGTAGCAAACATA
GTAAGTGTAAGAATACTGTACTTTTAATTGGCTGAATTTTTTTTTTGCAT
CGGAAAAACTTTTTCAAACTTTCAGCAATGATTCACCAAACTGTTACAAT
AAAAATTATCCAGCGCATTTTTTATCTTCTTACCTTCTTCATCTTCATTA
AAGCACTCAAGGTTTACTGAAGTTAAGCACACAAGATATTCTTATAATTA
TTCATAATCACTGAAACACTGTTCGTTGTGCGCTGCGGTGGAGTGCATGA
CGTAACACGCGCGGCAACTAACTTGCCTTCTGTTGGAAGATCATATTGGG
CGTTTTGGCGTTACCTCCCTCAAAGCAGCAGGCGCCTTTGTCTTTCCGCA
ACTCTTTCCACCATTTTAGATGGCCTTAACAATAGATTCAAAAGGGCGCC
ATAATCTTGGAAGATAATTTGTTTTGGTCTCCGGCTTTGGGAAGTAGCAA
TGTTTTTGGTTGTTTTCGATGGAAAATGNTTCGATGGAAAATGGTAAGAA
ACTTAAGTTTACAAGTATCATTTAGTTTTTGCTGGCTTATAGAATGGCAG
GATCCTGGATGGTTTCCCTAACTGAACTTGCATGTGGACAGTTAGCTAGT
ATAGAGGCCCCTGCCCAGCGACCGGTCTAGTTGGCGACTGAACGTCTTTG
AACCCAGAAAAGTCATACAAAAACAAACCTCTTGAGAATTTCTTTTGGTA
GTTATCTACCTTGACCTATTTCCCGTACTGTGTAAAAAAAGTTCTAGAAA
AGAGCGAGTAGAATCCGAAAGATCCAACTTTGCACGGAAGCACATGAAAA
ACCCGGATTTTTCAAAAAAAAAAAAAAATGGCTACCTGTGGACAAAAAAG
CTTCGTAAGAAAAAACGCTTCAACTGAAGACTCTCCAAAGAGTGCCACTT
TCAAAACAAAACAAAAACAAACTTTAGAAAAAAATGGCGACTTGAAGAAA
AATTCTGAAAAAGCATGCCGAAGGGAAATATAAGTGAGCTATTTTAAAAC
AAAAGAACGAGTGTAAATAAATTTAATATGGGAAAGCTTATGAGTTTTTT
TATCATCCTGATCAATTAATATGACCTTACCTGCAAGTAGAGCACTGATT
TTCTCTTTCTTGCAATTGGTCGCAGACTGGTACGTCGGTTGGGAACTGGG
CACTAGTACCGCTCGCTTTGAAAGTTTTTTATTCTAAGAAGATCTCATCA
AATAAAAAATCAAAACAAACACGAAGAGCATGTTAAAAGTTGTCTAACCA
TTGGTCGAAAAAGATTTTCAAAAAAGTAAAAAGTAAGTGAAAATTTTGAA
TCAAAAAATTTCGGTCGCCAACTGGGCAGTGTACTCTAGACTTGTATATA
TCAAGATTACAGGATTTCGTGTACGGGCCAATTTTACTTTCATTTTGAGA
GGTCTCATTTTCGATTTCAAGCCAACATCTTAGCAACAGGGTGCTCGCCC
ATAGTTGCAGGGGTTTGTGCAAAAAACTAAACATAGAAAATTGTCCAAAT
CCCTCATTCTGAATAAACCAATAAAAAATGAAACTTTTCCATGTTTCACT
TTTTCAGAGAATTGAACCAGGCGATGTCAACTGAACCCTATCGAATCAAT
TTTCTTAATCGAACCATCAAATCTAATTGAACGATAGGTGTTTGATTACC
AAACTGAATTGAATAGTAATTTAACTTTACTGTGGAAATATCTTGATTAG
TTCAATTAAGTTTGATTAAAAATACGGTATGATGTTGTTCGATGCGTGTT
CGAGTAGTTCAATGCGTGTTCGATGATCGTTAGATACTCCAATAGCCTTC
GATCGGAAGTTTGATATATTTGACGATTATTCGATACCGTCAAAGTGCAA
AAGAACCCTGTTTCTGGACTAAGAATCTTGGTGCTTTACCTTAAACATTA
TGCTGTTTTTCTTGAGTATAGCCTTCGATCGGAAGTTTGATATATTCGAT
GATTATTCGATACCATCAAAGTGCAAAAGAACCCTGTTTCTGGACTAAGA
ATCTTGATGCTTTACCTTAATCATTACGCTGTTTTTCTTGAGTGTACCAG
CAATCAAAGATGTTGCGAGAAGTGGTCCAGAAAAAAGTAAGACTCTTACT
GAGTGGTTGTCTAACTTTCCAAATTAATTTTTTTGACTATATCCGAAGTT
TTTTTCTTTTTCCATTGGTTTACAAATGAACCTAATGGTTTCAAACCTAT
AAACTCTAAATTACGGTAAGCAGTGGCTAAAAGGGTGCGGACAGATAGCA
GAAAGCACAGTGCAATCGAAAAGAAAATCAAACCTATCGAACATTAATTG
AACCTATCGAACTTTAAATCGAATCGTGATCACAGGGTTGCTATGTCAGC
CTGAAATGTCTGGAATTAAGTTAAAGTTTGGAAATGTCTGTAATGTAAGT
CTGTATGTCTGGAAAGTCACTAATCTCAATCTAAGATTTTCAGTTTGAAA
ACCACAATTTTCGTCAGATTACCTAACTTCACACATACCTTAAATTCTCA
ACATCCTTTCAGACTTTTTTTTATTTGTTTTTATTGTTCAATCATGTAAT
AAAGGTTTTTATATGACTAACATTGTATTTTTATATGTAGCGAGAATGGG
CCTTCGGGCCTGATGACTTAAATATATAGGATAGATAGTCTGGAAAAAGT
CTGGATTTGGCATACTTGTCTAAAAAAGTCTGGAATTGGCATACCTGTCT
TGAAAAAATATGGAATTTGAAGGAATTAGTCCTGAATGAAGTCTAGTAAA
CTTTTCCGAAATAGAAAACTTTCCCAAAATAGAAAACTTTCATCCTGGCA
TTTGAAATTCCCAAAGATTTCTGCTCGATTCGCTCTCAACCAATTCTGTA
AATCATGTCCATTCTGAGATTTGTCATTCTGATGTGTTCATCAATCTGGC
CTTTCAAATGACCGTTAAGGAAAAACTAAAAACCTTCCTAAGGGTTAAAA
TGTCTGGAAAATATTGTGTATTTCGCTAAAATGTCTGGAATTTTCAACTT
GGCAAACCTGTAGCAACCCTAGAATCAATCGAACAGTAATCGAGCTTTAG
CCAAATTTCTTGGTTTGATTACTGTTCAATTTGGTTCGGTAATCGAACAC
CTATCGTTAGATTGACATCACCTGGATTGAAGATTAGTAATAGTTTACAC
CTTAGGCTCATGAATTGAAACAAATGAAAGATGTGTTATTAAGAATATGA
TTTTACAGGACTGCCATGCAAGGTACTGAGAGGTGCTGAAAAGGCGCTGA
AAAGGGGCCAAAAAGCAGGGCTGTGTTGGTGGAAAATTGATAATCAGTCC
GCAAAGGAGCGCTGGGAAGCAATCTGTAGGGTAAAAGATTCAAATGCTAT
GTATGTGAGCGCTAGAATGTGGGCGCTTCACATTAAAAATAACACCCAAC
ATTAAAAACCATCTGCATGTGCGAAGGGGAAATTTTGTGCATTTGTACAT
GGAATATGTTATATTCTTTAGTGAAGGGATGAAGACGGCCGATCTTGCTC
TAGTTTGTGTGCAGTATCATGGAATTTAGAAGCAAATGAAATGCAATTTT
TTTTAAATTTTCTTAACGGGATTAGCCTTGACCCCCTCCCCCCTTAACGG
CCAAATGCCACTAAAAAATTCGAAAATGGAAAGTTGAAGGCCCCTAGAAG
AGACCACTTTCTTTTTTGTTGCAGATTTTGATACAAACTTCTCACATGGA
TTACCGTAACTTGGTCTAATGTTGACATCCCTCTTCTAATCTCGACACCC
TTCTTTAGAGATAGGAATAGTAGAAAGGTCAGAATCGCTTATGGAAACTA
TATTTCTTTGCTTAGCAACCAGAGAGGAAAAAATCTTTTGTCTATCAGTG
ACTCTGACTTAACTATTATTTCTATCGACATTAGACCAACTTACGGTAAA
TTCTGCAAAAATTTCTTCCCACAAAAATGTTTTCCCTTAAAGGTAGTAAG
TCAAGTTTAAAAGGTAATACCTCAAACTTTTAATTAGGATATCTACTTTC
CAAATAATAATAGCTCCAAGCACTTTGGAACATTTGTTTTGACATAAGGC
CATCAAAAACTGCCAGGCTGTTGAGGTTGTAGTTTTTCTAGGGTCACCCA
GTTTATTTATCTAGACTGTATCTGGCTATTAACTGGATAGCAAAAATTGT
AGGCTATATAATTATAGGACACCCCAGAATATCATGTTTTATGGTAACTA
CCTACCCTTTCAAAGAGACCTTAAAGCTATATACTGTAATAAAGCATTAC
TGTACTTGCTTTGTTCTGGCTAAATAAAATACTTTGTATAAATTACCTTT
CTACATTACGAAAATGTAATTTCTTCATGTAGCCTCTCTATTTTAAAAGA
TATCCATCCTTCTATTGGGCCTTCAAAACAATCCTTCAAAACACCACCAT
TCTGGAAATTGTCAGGGATCCTCAGGATTAAACTCTAAGAGATACCACAA
ATATTTCCTATTCGGTTGGCTGTATTAAAGGCTCTTTAGAATTTCTTGCA
AGCCTGATTTTATTAAGAGACAAATAATGATAAATTTGTGCTACTAACTA
ATGATCTTTATTGAAAAATACTGTGACCAACTTCATTACATGCTTTTTGC
GTTTTGTTGTTGTTACTTACCTTGATATATTTAAACTTACATAGAAAATT
TACAACCAAGGATGATCATCTGAGCTGAGGCATTGAGTTTTTAATATGGC
ACATCAGAAGGTTGATGTCAAGGTTGTTTTGCTTGGAAAGGAATATGGAG
GAAAGACAAGTCTAGTTGAACGATATATTCACGAGAGGTTCAATTCAAAT
CAGCCTTACCAAAATGTGAGTTTTTTCCTATTTCTTAGGGAATATTTCAT
GCTTAGTTTGTATTCTCAATTGTAAATTTCTCTAAAAAGTTTGCACCTTT
AGCTTTAAAAAAGTCTTAGATCCTTGTGTTTCTCTTTCATTTATAGACAA
TTGGAGCAGCCTTTGGGGCAAAAACATTACACATCGATGGAAAATCAGTA
ACACTTGGGATATGGGTTTGTCACTTTTTCATAAATTTCATAAATTAATA
AGAAATATTTCAAAAAAAGTAAATATTCAACAACCTTGAACTTACCATGA
TGAGAAATTAAGGGAGATTATATTATGGTTGTATTTGTGTATTATTCTAT
CAGATAACATTATTTGAAGCATGAAAGAAGCAACGTTTTTATATATGTAC
AAATAAAATAAATATCATTCTAGGATACTGCTGGCTCTGAGAGGTATGAA
GCGATGAGCAGAATATATTATAGAGGTGCAAAAGCTGCCGTTGTTTGTTT
TGGTCAGTATTGTCCCTTTCTATGAGTATTTTCTCCACAATTTTCTAAGC
TCTTATTTTTGATTATGAATCAAATCTTTTTGTTGATGAATTTTCTAAAT
TACTTCTATCAACAATACATGTTTTACACCATTTTCTATCTCGCTCAAAG
ATGTAACCACTCATCATTCTTTGTTTTCTTTTTGAATTAGATTTAACGGA
TGATAATAGTTGGGACAGAGCAAGATTTTGGATTCAAGAAGTTCATGGGC
ATGAAGAGGTACTAAATTTGTTTTAAAATTTTTTCAAATATTATACAATA
AAAATGATACGCATCAACTAAAGTCTTCCCAATTACTTTAACTCACTTTT
AAATTTTTTTCTTAGAGTACTTTGCTTATAATTGACATTTAATAATTAAA
AATATATCAAGTGAAAACACGAGAGAAATTGTCAATAATTTCCATCAGAG
TCATGGAAATGATATCAGGATTTAGTAAAAAGTAAAAAACACCATGACAC
CAGGACACCATGTACATGAGTCAAACTATGTTGTGAAAAGTGCTATTGAT
TTTTATAAAAGATTGTCACAAATGAACTTAAATATCAAATTATATATTAC
TATTTTTTTAGGAATGTAAAATTTATCTCTGTGGAACTAAACGCGATTTA
TTGGAGCACCAAGACCGTGCAATTGACTATCACGATACAACTGATTATGC
AGACACCATAAGTGCAAAGCTATTCGAAACTTCAAGCAAAACAGGAGAAA
ATATTGGTTGGTAGAATTCATTTGTTTAGATTTTATGTAATGAAAATGAC
TAGAATTATCCCTTTCCATGAAAACAAAGAATTTCAAAGAGTCACTTTCA
ATAATATAGAACACTAATTACAAAGTTTCAATCTTTGATTCTTAAAAGAT
CTATAGATATCAAGTAATTTATGTACATTTTTAAATCTTTAGAGGAACTG
TTCACTGAGATTGCAACTGAATATATGAAAATTGGGATGCCAAGTGGTAA
GTTGTCTGAACTAAATTTATTGTATTTATTCCTCTTTGAAGACAAAAGTT
AAAGTTTTTGTAACAAAGATATCTTTACAATCATTTAAACTGCTCTACTC
GTTTTATCTGATTATTTCAGATTCATTGCTTTTTAAACAATCAAGTGAAC
TCTTCTTTAGAGAAAAGTCAGTATAAGCCTTTCATCTTAAAATAATAGAG
AATGCGTGATTTGTATCTATACCAAAATCAACAGCTCCGTAATATCTTAT
AGGGATAATTATTTTGATCTATTTGTTTTTCGTTTTTTTTCTCATCAGTT
GAGGATCCAAACATTGTGAATATGAATCAACGAACAACACAGTCTGAAGG
TGGCTGGAAAAAATCATGTTGTGGATGATATTCAAATTCAAATTAGTCAT
AAGTGTTATGTGTTCTAGAACCTCTGGTATAACGAGATGTCTGTCCTGTT
TCACCTTCAATACAGTGAAATACACGTACTTTGAAGATTTAGTGCATTTC
AAAAGGGAACTTTTTAGTGAAGTTTCTTAATTTCTCTGATTTCACAGCCA
GATAAACTAGTTGTTGTTTAGAAAAAGGGGTTACGCGCGCTCCAGAACGC
TTAAGTACGTTCCTCCACTCTGTTTGCATAGCAAAGACATGTGAGAGTGA
CAA

Coding sequence (CDS) from alignment at scaffold_60:1422749..1431551-

>TCONS_00071443 ID=TCONS_00071443|Name=TCONS_00071443|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_60:1422749..1431551- (Clytia hemisphaerica)
ATGGCACATCAGAAGGTTGATGTCAAGGTTGTTTTGCTTGGAAAGGAATA
TGGAGGAAAGACAAGTCTAGTTGAACGATATATTCACGAGAGGTTCAATT
CAAATCAGCCTTACCAAAATACAATTGGAGCAGCCTTTGGGGCAAAAACA
TTACACATCGATGGAAAATCAGTAACACTTGGGATATGGGATACTGCTGG
CTCTGAGAGGTATGAAGCGATGAGCAGAATATATTATAGAGGTGCAAAAG
CTGCCGTTGTTTGTTTTGATTTAACGGATGATAATAGTTGGGACAGAGCA
AGATTTTGGATTCAAGAAGTTCATGGGCATGAAGAGGAATGTAAAATTTA
TCTCTGTGGAACTAAACGCGATTTATTGGAGCACCAAGACCGTGCAATTG
ACTATCACGATACAACTGATTATGCAGACACCATAAGTGCAAAGCTATTC
GAAACTTCAAGCAAAACAGGAGAAAATATTGAGGAACTGTTCACTGAGAT
TGCAACTGAATATATGAAAATTGGGATGCCAAGTGTTGAGGATCCAAACA
TTGTGAATATGAATCAACGAACAACACAGTCTGAAGGTGGCTGGAAAAAA
TCATGTTGTGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044371XLOC_044371Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071443-proteinTCONS_00071443-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071443-exon-scaffold_60-1575043694:1431497..1431551TCONS_00071443-exon-scaffold_60-1575043694:1431497..1431551Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1575043694:1424887..1425057TCONS_00071443-exon-scaffold_60-1575043694:1424887..1425057Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1575043694:1424687..1424755TCONS_00071443-exon-scaffold_60-1575043694:1424687..1424755Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1575043694:1424400..1424478TCONS_00071443-exon-scaffold_60-1575043694:1424400..1424478Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1575043694:1424144..1424211TCONS_00071443-exon-scaffold_60-1575043694:1424144..1424211Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1575043694:1423646..1423790TCONS_00071443-exon-scaffold_60-1575043694:1423646..1423790Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1575043694:1423406..1423459TCONS_00071443-exon-scaffold_60-1575043694:1423406..1423459Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1575043694:1422749..1423103TCONS_00071443-exon-scaffold_60-1575043694:1422749..1423103Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1431497..1431551TCONS_00071443-exon-scaffold_60-1510915933:1431497..1431551Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1424887..1425057TCONS_00071443-exon-scaffold_60-1510915933:1424887..1425057Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1424687..1424755TCONS_00071443-exon-scaffold_60-1510915933:1424687..1424755Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1424400..1424478TCONS_00071443-exon-scaffold_60-1510915933:1424400..1424478Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1424144..1424211TCONS_00071443-exon-scaffold_60-1510915933:1424144..1424211Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1423646..1423790TCONS_00071443-exon-scaffold_60-1510915933:1423646..1423790Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1423406..1423459TCONS_00071443-exon-scaffold_60-1510915933:1423406..1423459Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1510915933:1422749..1423103TCONS_00071443-exon-scaffold_60-1510915933:1422749..1423103Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1431497..1431551TCONS_00071443-exon-scaffold_60-1491911889:1431497..1431551Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1424887..1425057TCONS_00071443-exon-scaffold_60-1491911889:1424887..1425057Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1424687..1424755TCONS_00071443-exon-scaffold_60-1491911889:1424687..1424755Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1424400..1424478TCONS_00071443-exon-scaffold_60-1491911889:1424400..1424478Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1424144..1424211TCONS_00071443-exon-scaffold_60-1491911889:1424144..1424211Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1423646..1423790TCONS_00071443-exon-scaffold_60-1491911889:1423646..1423790Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1423406..1423459TCONS_00071443-exon-scaffold_60-1491911889:1423406..1423459Clytia hemisphaericaexon
TCONS_00071443-exon-scaffold_60-1491911889:1422749..1423103TCONS_00071443-exon-scaffold_60-1491911889:1422749..1423103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1422749..1431551 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.0968	32.4863	10.3614	8.1396	10.2131	7.54213	22.0817	22.2461	23.3245	18.4452	22.5162	18.1338	28.8118	26.4342	35.5041	30.6294	31.4385	37.5651	35.078	27.2291	31.2073	28.5728	41.4534	44.219	36.3969	32.4833	21.1401	16.6241	37.9265	34.359
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00071443 vs. Swiss-Prot (Human)
Match: RAB24 (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 3.277e-76
Identity = 119/207 (57.49%), Postives = 156/207 (75.36%), Query Frame = 2 
Query:  107 MAHQKVDVKVVLLGKEYGGKTSLVERYIHERFNSNQPYQNTIGAAFGAKTLHIDGKSVTLGIWDTAGSERYEAMSRIYYRGAKAAVVCFDLTDDNSWDRARFWIQEVHGHEEECKIYLCGTKR--DLLEHQDRAIDYHDTTDYADTISAKLFETSSKTGENIEELFTEIATEYMKIGMPSV--EDPNIVNMNQRTTQSEGGWKKSCC 715
            M+ Q+VDVKVV+LGKEY GKTSLVERY+H+RF    PYQNTIGAAF AK + +  ++VTLGIWDTAGSERYEAMSRIYYRGAKAA+VC+DLTD +S++RA+FW++E+   EE C+IYLCGTK      + + R +D+HD  DYAD I A+LFETSSKTG++++ELF ++A +Y+ +    V  ED   V++ Q+       +  SCC
Sbjct:    1 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVG-PYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQVMTEDKG-VDLGQKPNP----YFYSCC 201
The following BLAST results are available for this feature:
BLAST of TCONS_00071443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB243.277e-7657.49Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
back to top