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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071497 ID=TCONS_00071497|Name=TCONS_00071497|organism=Clytia hemisphaerica|type=transcript|length=1321bp
accaggcgggtcgctcaaggccgcgcaactttggtaggatttgttggctt
caaatcctaccaaagagattgacctctagcccttcgggcttgaaactcaa
tgggcaCGGTCCCCCTGCCATCACACTACTGGGCCCAATATCGATATGAT
CTACATTTTTGGTCTCAGGTAGTTTATGAATTATTGATCCATTTTTTAGT
CTTAATGTTAGATAATGATGTACAGAGTTGTCGCAgactctccataactc
gaacaaatttgctgAGTTTCCTGCGAGGTACAGATTGGAGATTGCGTCCC
CCACTTTTCCCCCGTaactttttagaaaatatagtcTTTTGTTTTTTAAC
CTTTACAaaatataagaatttttttaaccttttttatttatttacacaaA
ATATTATAATGTACAGTTTACAACCTTTTTTTAACTTGTCATCAATTCGA
CCAATGTCATATTTCATTAGAGTTTGATAGCTTCCGTCTGTTCTTTTTGG
CTCCATCAAAAGTTCTCTTATTTCTCTTTTCACCCATCATTCCATTCACA
ATACTTTTGATCTTTGCTCCTTTAGAGACTAGATACTGAGCTACTTCGAA
ATTCCCTTCACGCACAGCAATATCTAGACATGAATCTCCGCTTTTCGTCA
ACTCATTAATGTTTCCTTCATTTTGTATGACGATTTTCAACATCTCTAAA
TTCCCAAATAAACAAGCATAGTGCACTGGTTGCATTCCCGCTCCGTCAAA
NTCGCTTTTCGTCAACTCGTTAATGTTTCCTTCATTTTGTATGACGATTT
TCAACATCTCTAAATTCCCAAATAAACAAGCATAGTGCACTGGTTGCATT
CCCGCTCCGTCAAACTCGCTGACGTCGACGTCCTTGCGGGATAACAAGCG
CCAAAGCTGTATAGAATCATTGTCTTTTATTGCCATAACAACAAGTGCAC
TTTGCACCTGTCCACAACTTTTCAGTCTTTTACTGTTATTTCTTGATCGC
AAAGCAGCAAGTCTTATATATTCTTCCTCTTCATCTTCATGAATAGAGTC
TACTTCACTTTCCTCATCGTCTGTTTGTGGCTGAATCACAATCTGAGGGA
TGGAATTTAACATTTTCATCATTTGAGGGATTGAACCATTAATTTGCTTG
ATTCCACCCCTTATTAATTCTTCCGGGTACGATTTAGTTCTTCGATACGA
TTGTGAGTACCTTTCTCCAGCTTCCTCGTCACTTATGACGTCATCGTAAT
CGCTTTCATTTATGATGCCATTTTTCTCGTAGCCAATCATTTTATTACTT
ATACCTAAAAGCTaagatcag Run BLAST on NCBI protein sequence of TCONS_00071497-protein >TCONS_00071497-protein ID=TCONS_00071497-protein|Name=TCONS_00071497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MIGYEKNGIINESDYDDVISDEEAGERYSQSYRRTKSYPEELIRGGIKQI
NGSIPQMMKMLNSIPQIVIQPQTDDEESEVDSIHEDEEEEYIRLAALRSR
NNSKRLKSCGQVQSALVVMAIKDNDSIQLWRLLSRKDVDVSEFDGAGMQP
VHYACLFGNLEMLKIVIQNEGNINELTKSXFDGAGMQPVHYACLFGNLEM
LKIVIQNEGNINELTKSGDSCLDIAVREGNFEVAQYLVSKGAKIKSIVNG
MMGEKRNKRTFDGAKKNRRKLSNSNEI Run BLAST on NCBI transcript from alignment at scaffold_60:167453..168773 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071497 ID=TCONS_00071497|Name=TCONS_00071497|organism=Clytia hemisphaerica|type=transcript|length=1321bp|location=Sequence derived from alignment at scaffold_60:167453..168773 (Clytia hemisphaerica)
ctgatcttAGCTTTTAGGTATAAGTAATAAAATGATTGGCTACGAGAAAA
ATGGCATCATAAATGAAAGCGATTACGATGACGTCATAAGTGACGAGGAA
GCTGGAGAAAGGTACTCACAATCGTATCGAAGAACTAAATCGTACCCGGA
AGAATTAATAAGGGGTGGAATCAAGCAAATTAATGGTTCAATCCCTCAAA
TGATGAAAATGTTAAATTCCATCCCTCAGATTGTGATTCAGCCACAAACA
GACGATGAGGAAAGTGAAGTAGACTCTATTCATGAAGATGAAGAGGAAGA
ATATATAAGACTTGCTGCTTTGCGATCAAGAAATAACAGTAAAAGACTGA
AAAGTTGTGGACAGGTGCAAAGTGCACTTGTTGTTATGGCAATAAAAGAC
AATGATTCTATACAGCTTTGGCGCTTGTTATCCCGCAAGGACGTCGACGT
CAGCGAGTTTGACGGAGCGGGAATGCAACCAGTGCACTATGCTTGTTTAT
TTGGGAATTTAGAGATGTTGAAAATCGTCATACAAAATGAAGGAAACATT
AACGAGTTGACGAAAAGCGANTTTGACGGAGCGGGAATGCAACCAGTGCA
CTATGCTTGTTTATTTGGGAATTTAGAGATGTTGAAAATCGTCATACAAA
ATGAAGGAAACATTAATGAGTTGACGAAAAGCGGAGATTCATGTCTAGAT
ATTGCTGTGCGTGAAGGGAATTTCGAAGTAGCTCAGTATCTAGTCTCTAA
AGGAGCAAAGATCAAAAGTATTGTGAATGGAATGATGGGTGAAAAGAGAA
ATAAGAGAACTTTTGATGGAGCCAAAAAGAACAGACGGAAGCTATCAAAC
TCTAATGAAATATGACATTGGTCGAATTGATGACAAGTTAAAAAAAGGTT
GTAAACTGTACATTATAATATTttgtgtaaataaataaaaaaggttaaaa
aaattcttatatttTGTAAAGGTTAAAAAACAAAAgactatattttctaa
aaagttACGGGGGAAAAGTGGGGGACGCAATCTCCAATCTGTACCTCGCA
GGAAACTcagcaaatttgttcgagttatggagagtcTGCGACAACTCTGT
ACATCATTATCTAACATTAAGACTAAAAAATGGATCAATAATTCATAAAC
TACCTGAGACCAAAAATGTAGATCATATCGATATTGGGCCCAGTAGTGTG
ATGGCAGGGGGACCGtgcccattgagtttcaagcccgaagggctagaggt
caatctctttggtaggatttgaagccaacaaatcctaccaaagttgcgcg
gccttgagcgacccgcctggt Coding sequence (CDS) from alignment at scaffold_60:167453..168773 >TCONS_00071497 ID=TCONS_00071497|Name=TCONS_00071497|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_60:167453..168773 (Clytia hemisphaerica)
ATGATTGGCTACGAGAAAAATGGCATCATAAATGAAAGCGATTACGATGA
CGTCATAAGTGACGAGGAAGCTGGAGAAAGGTACTCACAATCGTATCGAA
GAACTAAATCGTACCCGGAAGAATTAATAAGGGGTGGAATCAAGCAAATT
AATGGTTCAATCCCTCAAATGATGAAAATGTTAAATTCCATCCCTCAGAT
TGTGATTCAGCCACAAACAGACGATGAGGAAAGTGAAGTAGACTCTATTC
ATGAAGATGAAGAGGAAGAATATATAAGACTTGCTGCTTTGCGATCAAGA
AATAACAGTAAAAGACTGAAAAGTTGTGGACAGGTGCAAAGTGCACTTGT
TGTTATGGCAATAAAAGACAATGATTCTATACAGCTTTGGCGCTTGTTAT
CCCGCAAGGACGTCGACGTCAGCGAGTTTGACGGAGCGGGAATGCAACCA
GTGCACTATGCTTGTTTATTTGGGAATTTAGAGATGTTGAAAATCGTCAT
ACAAAATGAAGGAAACATTAACGAGTTGACGAAAAGCGANTTTGACGGAG
CGGGAATGCAACCAGTGCACTATGCTTGTTTATTTGGGAATTTAGAGATG
TTGAAAATCGTCATACAAAATGAAGGAAACATTAATGAGTTGACGAAAAG
CGGAGATTCATGTCTAGATATTGCTGTGCGTGAAGGGAATTTCGAAGTAG
CTCAGTATCTAGTCTCTAAAGGAGCAAAGATCAAAAGTATTGTGAATGGA
ATGATGGGTGAAAAGAGAAATAAGAGAACTTTTGATGGAGCCAAAAAGAA
CAGACGGAAGCTATCAAACTCTAATGAAATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071497-exon-scaffold_60-1491911889:167453..168773 | TCONS_00071497-exon-scaffold_60-1491911889:167453..168773 | Clytia hemisphaerica | exon |
| TCONS_00071497-exon-scaffold_60-1510915933:167453..168773 | TCONS_00071497-exon-scaffold_60-1510915933:167453..168773 | Clytia hemisphaerica | exon |
| TCONS_00071497-exon-scaffold_60-1575043694:167453..168773 | TCONS_00071497-exon-scaffold_60-1575043694:167453..168773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:167453..168773 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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