TCONS_00071577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071577
Unique NameTCONS_00071577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071577 ID=TCONS_00071577|Name=TCONS_00071577|organism=Clytia hemisphaerica|type=transcript|length=3130bp
atttattatttcaacagaggaattttattttgaagaaaattagaAACATT
TTGACTTTCACCAcacgaaacaaaaaattgttgaaaatcaaaacaatcat
tttattgaccaatcaaaacaattgatgacgtcacttataGCAGAGGATTG
TTAACGATTTTTGGATCCATCTATATCCATCTTAATTTGAATTCTTTAAG
AAAAgacagaagaaaaaaagttgttcCTAGTGACACCATAGCAGGTCAAT
ATCAAATTGTTGATTTGTAGAAGACTTATTGATTTATTAAGCTTACAACC
CAAAATTCACTGTTGGATGCATGTATTGGCAATTTCAAGTTGAGGAATAT
AAAGTAGCTCATTGAGAGTAATCTGATGTTTGTTTACTGAGTGGTCATAA
TCAATCTGAACATTTTTGGACTAAATTATTAGTTGGTTAATGTAAACTAA
AAACTACAAAAGACTCGCTGTCTCAGTAATTTGATCTTCAAAGAACCAAG
AATCCATTCGTCGATTAAGAGAGTTTAGTCATTACCTTGAAATGGAGATG
TTGGCGAACACATTGATTTTATATTGGATGGCTTTAACAATGATCAACTT
ATCACAGGCAATGTACATTCAAGACTTTGGACTCAATATACCTGGAGCTC
CATGCAATCAAAGCTTTGTTGAAGCTGATGAAGCACCAGGGCTGGTAGAT
TGGAATACAATCGAAGGTCAATGTATTGGAAATCATACAATGAAAATCGT
TTGGCGTGATCCTGAAGTCCGTCCGCAGAAGATACACCATTATTTAGTGA
ATATTCGACACAAAGCAGACAACGTCATGCATTGTTTTCAGACAAAGTCT
GCGGAGACTTCTTACCGTGTGGAATTAAAGACAATGATGAAAGTCGACGA
GATTGCTTTCATGCAAGGAGAACAGCTCTATGTTCAGATTGAGACATTTC
CACGAGATAGGAGATTAAAATCAAAAGAAGTTGGCATTGGATCATGTCCT
GCCCGAGGACAGTGGGCGAATTGGAACACATGGAGCTCTTGTAATTGCGA
ATGTAAAGAAAATTACGAGAGATGTGTTGGTACGAAAACGAGAAACAGAA
TTTGTTTGAACAATTTCAATAAACATGAAACATTTGATTATAATTGCAAA
CCAGGCCgtaaaaatttgaatacaaACTGCATCAAAAACTGTAGTATGCT
TCCAGCAACACCCATCACCAACCTCAGTAAACAGACCTCACATAAAGAAA
ATGGAATAGAAAACAAATACCTTGTGTCTATCATGGTCGGATGTTTTGCA
TTTGTAGCGATTgtggtttttgttttgatgtatatgAGATCCAAGATGAA
ATCTAATGTCATTATTGTTGATGAAAAACCAATATTAAATGAACAGAACA
GAAATCCAACCGTATATTTCTCCTACATTTCAAAAGACCAACAAAAGGAA
GGAGATCTTTTACACATGATTGCAGCACTTCACGAATATGGTGTCCAATG
CGTGGTTGATCTGCTAAATACAGTTGAAATTAACAATACTGGTGGTCTTG
CAAGTTGGGTTCCCAAGAGTATTACGAATACAGATAAAATCGTGGTGTTA
CTGACGAAGCAATATATAAAGgCTTTAAATGAGACGGAAAAAAGCGGAGA
AGAAATTACAGAATTGATGGAGGatcgggtctgtaaaatacacatggAAT
ATAAACTAATAACTTCAATGTTATACAACACATGTCAAACGAGCTGTAAA
AAAGTTTTACTAGTACTTGGGAAAGACGTTTTAAAAGATGAGATCCCTCC
ACTATTTAGGACGATGTTTAATTGTCCGTTACCTAAAAGGTTTGATATTA
AGGACGATCATTTTATGGCGCTTCTCGGTATTTTATTGGATACTGAACCA
TTTCAAGTGTCTTGACCGGTGAATATGTGGATTTGGAATGAATTCGTACA
ATAGAAGGGGTCGAGCGAAAAAAAATGTCCATATTTTGTATATgcatggc
atgtttgacacaccgaaataccgtcacttttttctacaaaaaccgAAACA
CCAGCGTAAAATAAGGCTAATACCGTAACACCGTCAAACTCGGATGAGAT
AACTCTCAATTGGATGAAGAGTGAATTCGgcgggatggattttttttggt
ataataGGGGTTCAAGGGTCTCGAACACCGTAATAATGCAGATTAatcaa
ttttgtcaacatccATGTCAGCCTCAACACCGACAacgtaaatttttgtt
gaaatattAATTTTGCCAGCGCATGGACACCGAATACcgcaacatatttt
tcttgtatcTGCGTCAACACCGACATTCAAAGATTTTTGTTGAAATACAT
ATTTTGCCAGCGATTagataccgaaataccgtcatTTATTCTACAAACAT
GGGAACATCGACGTAAAAAGGGCTAATACCGTAACACCGTCAAACTTGGA
TGAGATAGGGTGAGATAATTCTCAATTGTGCTGAGAATGCACAGTAGTAA
AGAAAACCAATCAAACAGCACACAAAATAACTCCAAAGCACACCCTAACT
ACGCCTAAGGTAGATTTTGAAACGCATATGTTTCTTGATGATTTACTCCG
TGGAAATTTCAAACCGTCTTTTAGAATTCAAGGAGATTCTATTTTACAAC
ACCTTTGATGAACCACTTTGGTCAAATTGGCACATAACGTCATGACAACG
TCCAtctgacattcataacgtccatataacgttcaTGTGATGTTCATAAC
GTTAATTAAATGTcggaaaatgttaaaacaacgtcGAATTCGGTAGTGCA
ATGACTTTAAAGATTTCACTGTATCCCAGCTGACCCACAatgttatttca
acgtttatttaacgtttaTAGtgcgttcatataacgttagatgaacgtta
cgTGCCAGGTGTTTTCAATGGTGTTTCAATccaatttctttctgttttCT
CCTTCCTTCATTAGAGACCATGAGTAAGACGCGACTGATGCATAaatatt
tatacttttttccaCATGCAAGTGACTTTGAAAATagattttccttcatt
tttttttcttagaaattATAAATTGGATGTGTAAATAATTTTTATggaat
tgataatttttctgtGAAAAAAACCTGGat
Run BLAST on NCBI

protein sequence of TCONS_00071577-protein

>TCONS_00071577-protein ID=TCONS_00071577-protein|Name=TCONS_00071577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MEMLANTLILYWMALTMINLSQAMYIQDFGLNIPGAPCNQSFVEADEAPG
LVDWNTIEGQCIGNHTMKIVWRDPEVRPQKIHHYLVNIRHKADNVMHCFQ
TKSAETSYRVELKTMMKVDEIAFMQGEQLYVQIETFPRDRRLKSKEVGIG
SCPARGQWANWNTWSSCNCECKENYERCVGTKTRNRICLNNFNKHETFDY
NCKPGRKNLNTNCIKNCSMLPATPITNLSKQTSHKENGIENKYLVSIMVG
CFAFVAIVVFVLMYMRSKMKSNVIIVDEKPILNEQNRNPTVYFSYISKDQ
QKEGDLLHMIAALHEYGVQCVVDLLNTVEINNTGGLASWVPKSITNTDKI
VVLLTKQYIKALNETEKSGEEITELMEDRVCKIHMEYKLITSMLYNTCQT
SCKKVLLVLGKDVLKDEIPPLFRTMFNCPLPKRFDIKDDHFMALLGILLD
TEPFQVS
Run BLAST on NCBI

transcript from alignment at scaffold_62:224934..236413+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071577 ID=TCONS_00071577|Name=TCONS_00071577|organism=Clytia hemisphaerica|type=transcript|length=11480bp|location=Sequence derived from alignment at scaffold_62:224934..236413+ (Clytia hemisphaerica)
atttattatttcaacagaggaattttattttgaagaaaattagaAACATT
TTGACTTTCACCAcacgaaacaaaaaattgttgaaaatcaaaacaatcat
tttattgaccaatcaaaacaattgatgacgtcacttataGCAGAGGATTG
TTAACGATTTTTGGATCCATCTATATCCATCTTAATTTGAATTCTTTAAG
AAAAgacagaagaaaaaaagttgttcCTAGTGACACCATAGCAGGTCAAT
ATCAAATTGTTGATTTGTAGAAGACTTATTGATTTATTAAGCTTACAACC
CAAAATTCACTGTTGGATGCATGTATTGGCAATTTCAAGTTGAGGAATAT
AAAGTAGCTCATTGAGAGTAATCTGATGTTTGTTTACTGAGTGGTCATAA
TCAATCTGAACATTTTTGGACTAAATTATTAGTTGGTTAATGTAAACTAA
AAACTACAAAAGACTCGCTGTCTCAGTAATTTGATCTTCAAAGAACCAAG
AATCCATTCGTCGATTAAGAGAGTTTAGTCATTACCTTGAAATGGAGATG
TTGGCGAACACATTGATTTTATATTGGATGGCTTTAACAATGATCAACTT
ATCACAGGTGAGTTACATCTTTCTTTCGCTTATTTTATGGACTATGCCCA
GCTtgcacacaatgttgtttcaacgtttatctaacgttcacgacgtccat
ataacgttagaNTGCACACAATGTTGtctcaacgtttatctaacgttcac
gacgtccatataacgttagatgaacgttgaaacaacgttgtgtgccaacg
tTGGGTGAGCATCCCCCACAGCGAGTCCATGGTCATGCTAATACGCCGAA
AATATTCTCTTATCACgctaaaaataatttaaccTGCTTATCCTATTGAT
TTTAGTTGTATGACTGACTTTAAATTCAAAAGAGTGCTCAATACCCTGGT
AGAGCGTTATCATTGTTAGAAATGAACGGAGAAACCTTTTTCCTAATACT
TAAAGTTTCCTATTCTTTCAAGCATTCGTCAGttagtttttaaaaaatct
tataaaacaACATTCCTAATGTATGAGTTCGAATACAGTATATTGGCTTC
AATTGACAAAGTTCAACAGCATACCCCTTTCTCAATGTACCagtcaaaat
ctttgaaagcaGTGTGGATAAAAATGAATTGAATAAAGTCGCCGCTGTTA
CTTCTCCAAATCGACACACAATTGTCAGTCAAAATTGTAATCTGGAGAGA
TTCTAAACGTGATTCTAAATGGGGAAAGTGAAAATGGTTTATTtagaaac
acccctgtctcacaaccccggtggaactttttttctcagtggggaatttt
taaacattgaatttcaaatggggatgaaattaaagttaattttcaagtgg
ggctgaaattctaatgtattttcccaccggggacgaaatttttgtcaatc
tttccGGTGGGGCTGGACTTCCAGTTGgtttgtgagacaggggtactTAG
AATTATCCTAAAATTGGATATTCAGACCTAACCTTATTTTTTTGCCGTAT
TATTTAACAATTCAAATCAAACTCTTTTTGCTGACTTAACAAGAAAGATA
CAAGAAGTATAAATTACGGATCTCCAGAGGCCTTTGCaatgcttttttaa
ggaaaGGGGAGGAGAAGAGagataaagaaaataaatatttagaaCAAGTG
CCATATCCTTTGAAAAAGGTCTGGCATCaagatttttgtttcttttttaa
gcAGGATAACTACTTGAGGCTAAGGAAAGTACTTTTGCAAGAATAATAAA
TAAACGTGCCATTCGAAAGCCcttgaaatataatataaatatacGGATGT
GGTTGACAACTATCGTTGCCAAAAagtccttcaaaaacttcaaacctGAC
AAACTTTGGACGCCTCTTTTAAAAGTAATAGATgatatcggcttaacatg
aaaactcagatttgaccccggagaattccccacaatacTTTGCGCGGAAA
ATATTTCAGCGCGAACTTTTTTCCatgcaaagcattgtggggaattcttg
ggggtcaaatctgagttttcatgttaagccgatatcgtctagtTTTGCTA
TAAGCATCTTTGAGACCCTTTGAAAAGTGTCATGAACTATAGTTAAAAAG
GACCTGGAAACGTTGTGAAATAAAACGCTTTTATTTGCTcccgggacaag
ctggagtttttacaagctcttatttgatttagttggtcgttaaccagtaa
taaaacaatgtcgttactttttctaaagaacgcgtcaccTCTaccacttt
aaatgaccaattagtgaagtatcttgtaaaaactccagctcatcccggga
tttttgatgcattttttATCTAGAGTACTTTGAGACCAATCTTATCATCT
CTACCTGAAGATATCATTTGTATCGAGTTTACTATTCTGGGATTGAAAAA
GCCTAATTCCATgtattattattttgatgacTTCAAAATCAACCTCGTTT
AAACCTGGTAAACCAGAACTCAACTCCTCTTCATgaaataccgagtttat
gtatcggaagatatcgagggcgacggtaagtgaaatgatacaaaacaaag
tcgatagttgatgtacggctctatacgtcgcctttgctcacctaaacaga
cgacggtattttggtgtttttaccgtcgtcgagcaaagtggacggtgatt
ttggagacatgtcaactttgctttataccgtccccacCGACTTacctcga
atacataaactcgctattgacGGGAATTAGGTTAAAGTTTAGATCAGAAA
TTTGTGACGAAGAACGTTGCCACTTGCGATAAGTAGTGTAAATCGCAAAA
TAAAGTTAATTATAGAATTTTTAAACGCAAATTGCACTCTCTGAATATCC
GGAGAGTACGTCTGTCTGAACGTCGTGAAAGCTCTGTGTTTTTAGTCAAC
CCTTTAGAGAAGGGGCCttcatgcttataaaaataaataatacaTCACAT
ATCTTTCAAAACACTTGACAGACAGGTTGACAGGCCTGATAGAAAGTAGC
CAAAAACTGCCAGAAACCTTAAAACCAAACTACTTTCAATTGTTTGTTTA
TGTTGTAACCACCTAAAATAAACGTCTCGAGTGGGTAGCAAACTTAATTA
GGCTACTCAGTGtaaacaagaaactctcatactCTAAAACACGACACTCC
ACTATTCCATAAAAATCCCATCTTCTCTGACAATTAAATTAGGTAGCGtc
gacccttatggctcgcacatacccagcacctattttgcctaataccccct
cccccggagAGTGAATAAATTTTACACTCAAAATTAGTGCAGCCTCCTTA
GATAATACAGTGCATCAAATGCTATATATTAATTTCCCTGAAAAATAATA
TAGAAATTTCAGATTTATTATAGTTAATCATTCGTTAAAAGATTCTGCTT
CTTGAATCTCGAGGAAAGTTTTGTGCACAAAAAGTCGTGAGAAATCCCGT
TTTTAGTCCCGTTAAATCATGTTGCAAATCCTTTAATGAAGTGAGAAGCC
TCAATTTGATCAAGTGTTGACATTCTAATTTATCAGGGTTTAGACAGTTC
TACGTTaaataaatgtaaaaataaaacttcataCTTATGTGCTACCTTTA
GTTGTCGAGATAAAATTGTTTATAGAAATATCCtatccaaaattagttct
tcattcttaaaagatctttaaatgaactttttcaatttttttcaaatgtc
aagCTTAGCACAAAAATGTTACTTAAGAATTGATAATGACTACTTGTGAG
AAGGTTTAATAGAGAAAGATAAGATTCATATTCTATCCACTACAATCGGT
GACGAAATACTTGGCAcgaaagggaaatccaccgggaagttttgaaacca
caatcgatttgtaagtgctctaaagtaggttcgaaaggtagagttttaac
tctgagttttaaggCTAAACTTAAGTCTTAGGACCTTatgtgaggatcca
aaagttcaaaaatggtccagtagggcttgaaatatagcctaaaaaccaat
aaatccctcccagatcgaaataatcgatgaaatcaagttgaaggcccgaa
attgacacTCTCGCTCGAAcctcaattttcgaaaaatggtaaattagcta
aaagtgccaatatgttatggcactcaTTGTAGATATTTTTATAATCTACA
AAATGCTTTACatgtttctttctttaaaaaccTTTCAGGCAATGTACATT
CAAGACTTTGGACTCAATATACCTGGAGGTAAGCATTGactaaaaaatca
gttttttttttttagttcataaattcaaaaaataaaaacaatgatataaa
aCGGACTTTTAGACTTCGGACTTTCCAACTTGTAGAAGTCGGTTTGACGA
TTCGGTTGTAAGTTGTTGTAATTCCAACTGCCTTGCTGGCCCTTTCTACG
CCGGCTCTTATTCGCGTTATTTTTTCCGTCtctggcgtaataagggccgg
cgtaaggGGTCTGAATTAAAATACGGCCaggctaaaaatgaaaaacactg
agCTTTGGCGTAAtcagggccggcgtaaaaggggccggcgttaaattagg
gccggagTAAAAAGGACCGATAAGATATCAGTTTTTTGAGTTCAAAATCA
GACTCGCAGGAGGAGgtcgggtctcctgtctagacTAGACTAGGATTTTG
GGTCACAAgagtttcttttttatttcaaatacgATATTATAATCTTTTGA
GTCGGATCATTATATGTATATTTCTCTTCTAGACGATCCTATCTATACGA
TATTATTGTCTAGACAAGGTCACAACTCTAAAgtcccgaatagtaggggg
ctcaattttttttcaaaatacagtaaactcccggttattcgaagctccaa
gggggttgagaatttacttcgaataatCGGGAGCtcaaataactgaaaaa
tttattttcccaTCAGATTCTAAACTTAACCTTAATCGGAGGGGCTTTTT
TGAAGTAATTGAGGCATTGCAGTTCAATTGAGTGTAATAAcacaaagaaa
ttcaaaatttaaacaaattttggaaataattGGACCAGTACGgcgcattt
tcttgaaattatttgaccattttcaggcaGAATATGgccagatttcaaaa
ttttacacccttagagtgcaatttttctcatctacGCTGATTTCAGTGCA
CTTTGATAAGCTTAGAAAATACACCctaagggccgcacgtatggtaggCC
ATTTGCCTTTAGTGCCCCCCTCGGCGTTTGTCCCAAGCTCGACTGCTGCT
tacgtttttctttatacaaGACAGTACTTTAAACTAGACATTATTTCCAC
TAGCTCCATGCAATCAAAGCTTTGTTGAAGCTGATGAAGCACCAGGGCTG
GTAGATTGGAATACAATCGAAGGTCAATGTATTGGAAATCATACAATGAA
AATCGTTTGGCGTGATCCTGAAGGTGATATataacattgtttcaacgttt
ttctaacgttatatggacgttctGAGCGTTTgaaaaacgtcgaaacaacg
ttgtgtgccagctgggtatttAGACCTGTTTCTTAATGGtaccaatacac
cttttcgaccgtagtcagcGTGACTCAGGcacgtgccactttattattta
attatccccctaaactcgatgcaatccttttttgacacatttttctattg
tctgtaggtgcgaaaaaaggactgggacggttttagtgggatctAAAGCG
GACATTAAAATGCCCGCGAGGCTTTATGAGTTTCAAACCTAATaaatgtt
ctcattttcacAGAGTTTTTTTGCACattcattgttttcaaaaattgggt
gtttagaagagtacgcaaagcttaaaaatgttaagaatttgttttgataa
tttagCCGTCTAAGCcgtatgctcttatatagtttgtataTTTTATGCCA
GCAAGGATTAGAATTTtcctaaatttgataaattattATCACATCCGTTC
TCTTGACTTTAAAACTTACATTTGTATACATTTTGCGTATACTTTTTTTT
CAGTCCGTCCGCAGAAGATACACCATTATTTAGTGAATATTCGACACAAA
GCAGACAACGTCATGCATTGTTTTCAGACAAAGTCTGCGGTAAGTCAAAT
TTCTTTGGGAATAAGTTTAAACGTGTAAACGTTAGGGGTGTAAACTCAGC
CTATGGTCATCTAGATCTCTATATGTAGCACGCTATATTTTATACCTGAT
TGTACGTGATTTTGAAGTCCTCAAACTTTACATCTGAAATATAGAGTTTT
AATATTACATTTAAGACCTTGAACGTTATAATTCCTGTATCCAAAAGGTC
AAAGGCTGAAAATATAGTCTAGAAGCCGCGTAACTCAAAAAAAGTGAAGG
AAtatgaaatgaaataaatttaCGCCTTTAAATGTGGATTTAACGGTATC
TTATTTGAGGTAGTTTTGAAATATAAGGAGTAGTATAAATAAAACTTGAC
CTTTCAATTTCCAGGAGACTTCTTACCGTGTGGAATTAAAGACAATGATG
AAAGTCGACGAGATTGCTTTCATGCAAGGAGAACAGCTCTATGTTCAGGT
ATACTTTTTGCGTCATTGGGGAGATGAAACTGATTAAGGAAATGTAATGG
TGTGAATTTTAGAACATGAGTAATCTAAAACAATTGGTTTAAGGCTCTCA
TTGAACAAAGATTTCATCTTCAATATCTACGAATAAGGCTCAAAATCTTT
TCAGAAGATAACTCTGAATTTGAAACTCTGTAGACTTAATCCtaattgat
tttcaaaatctttattttttttaattaggaacaaactatatattCTTTAG
ATTGAGACATTTCCACGAGATAGGAGATTAAAATCAAAAGAAGTTGGCAT
TGGATCATGTCCTGGTAGGTTTATTTCGTATAtcttacaatatatttttt
gcTTGGTTTTAACAATCGACTCAGAGTTCTTCAACAGAACGATTTAGAAG
CCTATCTCTCAAGCCTATAATCTTTATAGCCCCCTCTTTCACATAAAAGG
GGAGATAAGGGAAAAATTGACTGTCGGGAAAGTTATCCGGTCCGCGGAAA
TTGAGATCGAGTTATATTTTGAGTTACAAAAAAACGAGTTATgataaatt
ttttgtaaattttggttTCATTAATTATGATGTCATTGTTACTCGGTTAG
TTTTGCTTCCTTTAGTTGTTCGAGTTGTTTCCTGTGTTAACTTGGCTATT
TTAAATAACTTCTAGATTAGCTACTTAAGattctttttaaacttttatat
aGCTTTTTCTATAACTCGGTTCATATTTACTCCTGTTTCATAAAACTTCT
ATTTCATAACCCTAAGTCTTCAAACTCGAGTGATTCCTATTTCATAACTC
AGTTCCTCTATTTTAAATTTATGGCCTGAAGGACGCGGGCCGGATGACTA
TTTCGGCAGCTAATATTCTGCCATCCGGATTACATTTCCGCCGGTCGGAT
GATTATTCCGCCAACCGAGGAACTATTTCGACGCCAAAATTTCCGGCAAA
TTCTGACCCTGACCCCCCTGAtataaacaatataatttcaaattctATTT
GAATTTCGATCccatagaaattttcatccccactgagacCAAaaccaccg
gggctgtgagacaggggtgtgagtACCATTCAGGTCGCAAAGGGGATATT
ATTAAATTTTGCTTCGCTCAAAAGAAAAGTTGAATAGTTTTGAAATCTCC
TTTAATGTacaggcccggtggaagcgGCAAAACTGGGGAGaattcagcct
ccccacttttgagcaaatgagatttctGAAATTCCTAGCAAATTTTATCT
CGTTTTGAGCCATCAGCCTCCCACTTTAATGGTTGTTCCTAGAAGGCCTG
CTGTATGATCGTATTTTCACTCTTCCAGCCCGAGGACAGTGGGCGAATTG
GAACACATGGAGCTCTTGTAATTGCGAATGTAAAGAAAATTACGAGAGAT
GTGTTGGTACGAAAACGAGAAACAGAATTTGTTTGAACAATTTCAATAAA
CATGAAACATTTGATTATAATTGCAAACCAGGTAACCAACGCAATCTcat
ttttgacgtcagaaaaaaaaccatactttttcttcaaatatcCAAAAACC
ACAAATCTTACATGTAAGCTCTGCAAGCtccaaaatcatgaaatttcgTT
CATTGCATTTTTCGTTCTTGCCCCGCATTCGAAATTCTACAGAGGAATTC
AGAATTAATTcggaaaattttatcaaaaaagcaCCCTTTCTTTCGTGCTT
ATAAAGTGTATTAAGAAATATCCATTCGTAATTTTAGGCCgtaaaaattt
gaatacaaACTGCATCAAAAACTGTAGTATGCTTCCAGCAACACCCATCA
CCAACCTCAGTAAACAGACCTCACATAAAGAAAATGGAATAGAAAACAAA
TACCTTGTGTCTATCATGGTCGGATGTTTTGCATTTGTAGCGATTgtggt
ttttgttttgatgtatatgAGATCCAAGATGAAATCTAATGTCATTATTG
TTGATGAAAAACCAATATTAAATGAACAGAACAGTAAGTACAATGATGTA
AAGCCCCGAATAGACTATGGATACAATTTTGCGATGGGATTTCTGAATAG
acaggtacgagccgggaagtatcttatccatttgatggactaactttctt
ggggtttttcttgtttctAATGGCAATAAGAAGATTAAGCTTCTAGGCCA
tctgggtatccataatggcggattttttgTTATTGGACTCTTTTTGGACc
ccgtaggcaaaactgaaaatttttccaacccaaatataggctTACCATAT
ATCAATTGATCGGAAATTTTTCCTTTCCCATCTGAAACGCGTGTTCTGTG
TGGTCTTCACACAAACACCAGATTCGGATTGAAAATGGAATTTATAAACC
GAATTCGAATGTGCcaagtgaaaacaaagaaaacgctACTTTCTTTCTGT
CATACTGAGTGCAGCAGAAATCTTAAAGATACACTTTTGCGTGCTTAAGA
AAAGTTGAAGGAATCAATATAGACGGGATTTAAAACTCAATGAGTGACTG
TTGATCATCTTTCTTTTGTAAGATAAATAACTTAACTCCTATTTAAAGAC
ACTGAAGGATGAGTCTTCCTTCCTCTGCCTCCTTTTCGAAGGCTGTGTCA
CAATTACCTAAAACTTGATACTGGGTTTTAGATCTAACACGGGGTTTCTT
TCATTCCAGTAGAAGCATAAGAGATACTCTCCGTCATAAACTTTGAGCTC
CCTTAAGATCCACCACTGCTGTTGTCTCTGAATTAGTCCTACCGGCTATA
ACCAATATTGGTCTTTCTGCCACTGAGAggaaataacaatttttttatca
ttatagGAAATCCAACCGTATATTTCTCCTACATTTCAAAAGACCAACAA
AAGGAAGGAGATCTTTTACACATGATTGCAGCACTTCACGAATATGGTGT
CCAATGCGTGGTTGATCTGCTAAATACAGTTGAAATTAACAATACTGGTG
GTCTTGCAAGTTGGGTTCCCAAGAGTATTACGAATACAGATAAAATCGTG
GTGTTACTGACGAAGCAATATATAAAGGTATGAAAAAATCGAATAATAAT
AGCCGCATTATTTTCCCCGTTCAACACGGGGAAAGGACCCATGCCACCGG
GGGACCAGGGGCTCATGCCCCTTCTCCctttttgcaaagtaaaaattttt
ggttgcgcctccttagagTCTATATTTATATTGCCccccccactttcaat
ttcatggcgTGGGCCCTATAtatgtttttcataagaacaaactaagtaag
aaaaaataagacttcgatgaccaaaatattaagaacacgACCAGAAAATT
GTAAGCGTATTGCTTATTGGGcattatcttttcaaaaagttattgaaatt
tccaactttatttattttcaggCTTTAAATGAGACGGAAAAAAGCGGAGA
AGAAATTACAGAATTGATGGAGGatcgggtctgtaaaatacacatggAAT
ATAAACTAATAACTTCAATGTTATACAACACATGTCAAACGAGCTGTAAA
AAAGTTTTACTAGTACTTGGGAAAGACGTTTTAAAAGATGAGATCCCTCC
ACTATTTAGGACGATGTTTAATTGTCCGTTACCTAAAAGGTTTGATATTA
AGGACGATCATTTTATGGCGCTTCTCGGTATTTTATTGGATACTGAACCA
TTTCAAGTGTCTTGACCGGTGAATATGTGGATTTGGAATGAATTCGTACA
ATAGAAGGGGTCGAGCGAAAAAAAATGTCCATATTTTGTATATgcatggc
atgtttgacacaccgaaataccgtcacttttttctacaaaaaccgAAACA
CCAGCGTAAAATAAGGCTAATACCGTAACACCGTCAAACTCGGATGAGAT
AACTCTCAATTGGATGAAGAGTGAATTCGgcgggatggattttttttggt
ataataGGGGTTCAAGGGTCTCGAACACCGTAATAATGCAGATTAatcaa
ttttgtcaacatccATGTCAGCCTCAACACCGACAacgtaaatttttgtt
gaaatattAATTTTGCCAGCGCATGGACACCGAATACcgcaacatatttt
tcttgtatcTGCGTCAACACCGACATTCAAAGATTTTTGTTGAAATACAT
ATTTTGCCAGCGATTagataccgaaataccgtcatTTATTCTACAAACAT
GGGAACATCGACGTAAAAAGGGCTAATACCGTAACACCGTCAAACTTGGA
TGAGATAGGGTGAGATAATTCTCAATTGTGCTGAGAATGCACAGTAGTAA
AGAAAACCAATCAAACAGCACACAAAATAACTCCAAAGCACACCCTAACT
ACGCCTAAGGTAGATTTTGAAACGCATATGTTTCTTGATGATTTACTCCG
TGGAAATTTCAAACCGTCTTTTAGAATTCAAGGAGATTCTATTTTACAAC
ACCTTTGATGAACCACTTTGGTCAAATTGGCACATAACGTCATGACAACG
TCCAtctgacattcataacgtccatataacgttcaTGTGATGTTCATAAC
GTTAATTAAATGTcggaaaatgttaaaacaacgtcGAATTCGGTAGTGCA
ATGACTTTAAAGATTTCACTGTATCCCAGCTGACCCACAatgttatttca
acgtttatttaacgtttaTAGtgcgttcatataacgttagatgaacgtta
cgTGCCAGGTGTTTTCAATGGTGTTTCAATccaatttctttctgttttCT
CCTTCCTTCATTAGAGACCATGAGTAAGACGCGACTGATGCATAaatatt
tatacttttttccaCATGCAAGTGACTTTGAAAATagattttccttcatt
tttttttcttagaaattATAAATTGGATGTGTAAATAATTTTTATggaat
tgataatttttctgtGAAAAAAACCTGGat

Coding sequence (CDS) from alignment at scaffold_62:224934..236413+

>TCONS_00071577 ID=TCONS_00071577|Name=TCONS_00071577|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_62:224934..236413+ (Clytia hemisphaerica)
ATGGAGATGTTGGCGAACACATTGATTTTATATTGGATGGCTTTAACAAT
GATCAACTTATCACAGGCAATGTACATTCAAGACTTTGGACTCAATATAC
CTGGAGCTCCATGCAATCAAAGCTTTGTTGAAGCTGATGAAGCACCAGGG
CTGGTAGATTGGAATACAATCGAAGGTCAATGTATTGGAAATCATACAAT
GAAAATCGTTTGGCGTGATCCTGAAGTCCGTCCGCAGAAGATACACCATT
ATTTAGTGAATATTCGACACAAAGCAGACAACGTCATGCATTGTTTTCAG
ACAAAGTCTGCGGAGACTTCTTACCGTGTGGAATTAAAGACAATGATGAA
AGTCGACGAGATTGCTTTCATGCAAGGAGAACAGCTCTATGTTCAGATTG
AGACATTTCCACGAGATAGGAGATTAAAATCAAAAGAAGTTGGCATTGGA
TCATGTCCTGCCCGAGGACAGTGGGCGAATTGGAACACATGGAGCTCTTG
TAATTGCGAATGTAAAGAAAATTACGAGAGATGTGTTGGTACGAAAACGA
GAAACAGAATTTGTTTGAACAATTTCAATAAACATGAAACATTTGATTAT
AATTGCAAACCAGGCCgtaaaaatttgaatacaaACTGCATCAAAAACTG
TAGTATGCTTCCAGCAACACCCATCACCAACCTCAGTAAACAGACCTCAC
ATAAAGAAAATGGAATAGAAAACAAATACCTTGTGTCTATCATGGTCGGA
TGTTTTGCATTTGTAGCGATTgtggtttttgttttgatgtatatgAGATC
CAAGATGAAATCTAATGTCATTATTGTTGATGAAAAACCAATATTAAATG
AACAGAACAGAAATCCAACCGTATATTTCTCCTACATTTCAAAAGACCAA
CAAAAGGAAGGAGATCTTTTACACATGATTGCAGCACTTCACGAATATGG
TGTCCAATGCGTGGTTGATCTGCTAAATACAGTTGAAATTAACAATACTG
GTGGTCTTGCAAGTTGGGTTCCCAAGAGTATTACGAATACAGATAAAATC
GTGGTGTTACTGACGAAGCAATATATAAAGgCTTTAAATGAGACGGAAAA
AAGCGGAGAAGAAATTACAGAATTGATGGAGGatcgggtctgtaaaatac
acatggAATATAAACTAATAACTTCAATGTTATACAACACATGTCAAACG
AGCTGTAAAAAAGTTTTACTAGTACTTGGGAAAGACGTTTTAAAAGATGA
GATCCCTCCACTATTTAGGACGATGTTTAATTGTCCGTTACCTAAAAGGT
TTGATATTAAGGACGATCATTTTATGGCGCTTCTCGGTATTTTATTGGAT
ACTGAACCATTTCAAGTGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044474XLOC_044474Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071577-proteinTCONS_00071577-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071577-exon-scaffold_62-1491911889:224934..225540TCONS_00071577-exon-scaffold_62-1491911889:224934..225540Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:224934..225540TCONS_00071577-exon-scaffold_62-1510915933:224934..225540Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:224934..225540TCONS_00071577-exon-scaffold_62-1575043694:224934..225540Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:229172..229211TCONS_00071577-exon-scaffold_62-1491911889:229172..229211Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:229172..229211TCONS_00071577-exon-scaffold_62-1510915933:229172..229211Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:229172..229211TCONS_00071577-exon-scaffold_62-1575043694:229172..229211Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:230287..230406TCONS_00071577-exon-scaffold_62-1491911889:230287..230406Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:230287..230406TCONS_00071577-exon-scaffold_62-1510915933:230287..230406Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:230287..230406TCONS_00071577-exon-scaffold_62-1575043694:230287..230406Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:230987..231072TCONS_00071577-exon-scaffold_62-1491911889:230987..231072Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:230987..231072TCONS_00071577-exon-scaffold_62-1510915933:230987..231072Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:230987..231072TCONS_00071577-exon-scaffold_62-1575043694:230987..231072Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:231448..231531TCONS_00071577-exon-scaffold_62-1491911889:231448..231531Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:231448..231531TCONS_00071577-exon-scaffold_62-1510915933:231448..231531Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:231448..231531TCONS_00071577-exon-scaffold_62-1575043694:231448..231531Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:231784..231847TCONS_00071577-exon-scaffold_62-1491911889:231784..231847Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:231784..231847TCONS_00071577-exon-scaffold_62-1510915933:231784..231847Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:231784..231847TCONS_00071577-exon-scaffold_62-1575043694:231784..231847Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:232862..233014TCONS_00071577-exon-scaffold_62-1491911889:232862..233014Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:232862..233014TCONS_00071577-exon-scaffold_62-1510915933:232862..233014Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:232862..233014TCONS_00071577-exon-scaffold_62-1575043694:232862..233014Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:233271..233516TCONS_00071577-exon-scaffold_62-1491911889:233271..233516Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:233271..233516TCONS_00071577-exon-scaffold_62-1510915933:233271..233516Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:233271..233516TCONS_00071577-exon-scaffold_62-1575043694:233271..233516Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:234340..234560TCONS_00071577-exon-scaffold_62-1491911889:234340..234560Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:234340..234560TCONS_00071577-exon-scaffold_62-1510915933:234340..234560Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:234340..234560TCONS_00071577-exon-scaffold_62-1575043694:234340..234560Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1491911889:234905..236413TCONS_00071577-exon-scaffold_62-1491911889:234905..236413Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1510915933:234905..236413TCONS_00071577-exon-scaffold_62-1510915933:234905..236413Clytia hemisphaericaexon
TCONS_00071577-exon-scaffold_62-1575043694:234905..236413TCONS_00071577-exon-scaffold_62-1575043694:234905..236413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:224934..236413 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0275041	0	0.0163792	0	0.0312306	0	0.04094	0.0253554	0	0.040445	1.80942	2.44954	1.15176	0.34786	7.22127	8.03706	3.4602	4.01266	15.9003	17.1494	5.79325	7.11539	10.3801	10.2649	1.94855	2.25728	1.37505	0.933969
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR000157TIR_dom
IPR013568SEFIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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