TCONS_00071584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071584
Unique NameTCONS_00071584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3041

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071584 ID=TCONS_00071584|Name=TCONS_00071584|organism=Clytia hemisphaerica|type=transcript|length=3041bp
AGAGAAGtataaatcaatgaaaaataCTATTGAATAAAATCTTACAATTG
CATGATGGAACTAGGGAAAATTCTATTGGTCAGCATCGTCATTGCAACTG
TTTCTATTAAAGATTCTGTCAACTCAGAAGATGCAGCTGAAATGGAAAAA
TATGCAAAGAAATACTTGACAAAATATGGATACAAATCAAACTGGTTATT
GATCTATTCGAAATACTCATATGAAAAAGATCTTCGGACGTTTCAAGCAT
ATTTCGGACAAAGAGTATCAGGCGTGTTAACGGAAGAAACGTACTCTTTG
ATGAAACAAGAGCGTTGTGGTATGTCTGACGTTGGGTTTCGTCTTGGTAA
AGAGACGGAGCAGGAAAAGAAACATGATTTTGTATTGCAAGGTACAAAGT
GGACCAAGAACACCATACTTTGGGATTTTAAAAGCTTTCCAAAAcattcc
aaacaacaaagagaaaaatacaacaaaatcataacaaaatcttttgaaag
atgGTCAAAACACACTAACCTTCGATTCGAAAAATCTTCATTGAATCCTG
ATATTGTTATCAACATTACAAAAGATTTCCATAGAGATCCTTATCCATTC
ACCAAGGAATTCAAAGATCTTGGCCACGCTTTCTACCCACTGAGTCAAAG
AGGTCTTGCAGGCGATATCCATTTAAATCAAGATTTGGTTGAAGGGAAAG
CAGATGCAGACTTTAATTGGCTTTTTACTCATATGATTGGTCACTCTCTT
GGTATCGAGCATACAAACGATCCGACCTCAATAATGTATCCAATcaataa
gaattttcaaaacgaggctgacTTTCAAATCTCTACTGGCGATAGATTAG
CTGTTCAACAGTTGTATGGAAAACCACCAGCATTAAAAACAACAGTAAAA
ACACAAAAGACTAAACCTACAACAGGGACGATCCAGACGAGCACAGTAAA
ACAATCAGTCGATAAAATAACAACAACACCTCCTGCAATGAGAATTTCTA
CACTGACCACCCCCGCAACAACTACGACCTCACCCACAACAACTACGACC
TCTCCGACAACAACTAAGACCACTCCAACAACAACTACGACAACTACGAC
CATCCCTAAAACAACTACGACCACTTCgacaacaactacaacaacccCTA
TAACAACTACGACTATCCCCGTAACAACTACGACCACTCCAACAACAACT
ACGACCATCCCTTCTAAATCAACAATAACCACTCCTTCAAGGACCACTAC
CACACAATTAAATGTAAATCGTAAAACATGTCCTGAATTCGAAGTCACAG
CACTAGTATACTACCCTTTCCATAAAAGACTATTAGTTTATCTACAAAGC
GATAAAATTATGATGGTGAATTCAAAAGGGGTATCGTACACGACTTCAAG
ATATGCTCTGATCGCACGTCGCGGTGAATACTTGAAATGTGTGGATGCAT
CGGCGACCGTTAGAATCAGAGCGAAAGATTACATGGTAGTCTTTTCTAAA
GATAGCTATTTCCTGTATCATTTACGTTATTTCCAATTCGCATCTGGTCC
TCATAGTATACACAATGGTCAAAACCCGCTCAAACTTAAAATGCCACCTT
GGGTCCACAAAATAGACGCATCAATGACCATAAAAGGACAACTGTATATT
TTCAATACGAGATATGTATGGAAAACGAACTTAAATAATTTACAGATAAC
AGATGAGGGGCAAGCCAAAAACATTCAGAATGTCTTCCCCGGTGTACCGA
ATGATTTGAGTGCAGCATTCTCAGGTGTTCACCAAGAGAAAATGTTGACA
TATTTCGTTAAAAATGACTTGATATATTTATACAATGAAAGAACGAAGAA
AGTTATGGACGGATATCCAAAACATTGGGGAGAAACCATTTTGAATTGCA
AGGATGCCGGCAAAAATGTTATAAACGTCCGACACTGAACACAGGATGAA
GCTTTTTGACCTATGAAAAATGATCAGCCTTTTGACTGGAGGAGAGTATC
GAAAAAATATGAATGAAGAATGTATATTGAGTTTATCGTTCTTCATCTGC
AATTGGGctgttccagaaaaaaaatttacccccactgttgaagatattaa
ttttttcgaagtatcgaaccccctggatatcctactctATTAGTAATCCC
CACCCGTTGATTTATAAGTATCCCCTGGATTTCCAATCttaaaatatgct
caaccccctggatatcctctcttataaagatgcttagcCCATGGATATCG
TATTCTTTActttgaaaagacactttacccctggatatccgctcccttgt
agatatttaaccccctggatatccactttttaacaaaaatcattaaactc
ctggatatccgatatcctcaacaggggggtaTGGACTAtttctgaaaaag
cccattTCAGCTTTGAGCTTTGTTAGGGCAATATGGTGATAGGCTTTTTA
CCTTCACTCATATGAATGAGGAAGATCTGCTCGTTATACTTGGTGATATT
TGAAGGATTGTTTTCAATGAATTAAAGACGAGaagattttttagaatttt
tttcaaactttaaaaaatatgaaCGTAACGATATTCGAATATCGGACAAT
AAGGTGTCCAAATGGCTTTAACACAATGAgcacaaacgtcttttggaagt
ctaatgtacgtttctaggacgtccaaaGGTCTTAAAGCCGTCCATTGAAT
GTCCNcgtctaatgtacgtttctaAGACGCCCAAAGGTCTTAAAGCCGTC
CATTGAATGTCCATAAGACGTTGCGTGCCCATAGGGAAAGCATTTGGTTA
TCAGATGTTTTGACCTGCAGATACATCCTGTTGTCCTGATTAAAACCTCC
ATGAATGTTTGTCTATCTAAAGTCGAGAtatcaaagtttgaaatttctaa
aaatggaTTCTTACACGTTCCTTTACgtcaaaattctattgttctcacaT
TGCTAAAATTCCAAAACTGAAAGTCTaaaacttgtaacttaaatatctcg
attttggaaaatagtaaggcaaaaatattttgaggtttaGC
Run BLAST on NCBI

protein sequence of TCONS_00071584-protein

>TCONS_00071584-protein ID=TCONS_00071584-protein|Name=TCONS_00071584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=628bp
MMELGKILLVSIVIATVSIKDSVNSEDAAEMEKYAKKYLTKYGYKSNWLL
IYSKYSYEKDLRTFQAYFGQRVSGVLTEETYSLMKQERCGMSDVGFRLGK
ETEQEKKHDFVLQGTKWTKNTILWDFKSFPKHSKQQREKYNKIITKSFER
WSKHTNLRFEKSSLNPDIVINITKDFHRDPYPFTKEFKDLGHAFYPLSQR
GLAGDIHLNQDLVEGKADADFNWLFTHMIGHSLGIEHTNDPTSIMYPINK
NFQNEADFQISTGDRLAVQQLYGKPPALKTTVKTQKTKPTTGTIQTSTVK
QSVDKITTTPPAMRISTLTTPATTTTSPTTTTTSPTTTKTTPTTTTTTTT
IPKTTTTTSTTTTTTPITTTTIPVTTTTTPTTTTTIPSKSTITTPSRTTT
TQLNVNRKTCPEFEVTALVYYPFHKRLLVYLQSDKIMMVNSKGVSYTTSR
YALIARRGEYLKCVDASATVRIRAKDYMVVFSKDSYFLYHLRYFQFASGP
HSIHNGQNPLKLKMPPWVHKIDASMTIKGQLYIFNTRYVWKTNLNNLQIT
DEGQAKNIQNVFPGVPNDLSAAFSGVHQEKMLTYFVKNDLIYLYNERTKK
VMDGYPKHWGETILNCKDAGKNVINVRH
Run BLAST on NCBI

transcript from alignment at scaffold_62:291699..301463+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071584 ID=TCONS_00071584|Name=TCONS_00071584|organism=Clytia hemisphaerica|type=transcript|length=9765bp|location=Sequence derived from alignment at scaffold_62:291699..301463+ (Clytia hemisphaerica)
AGAGAAGtataaatcaatgaaaaataCTATTGAATAAAATCTTACAATTG
CATGATGGAACTAGGGAAAATTCTATTGGTCAGCATCGTCATTGCAACTG
TTTCTATTAAAGATTCTGTCAACTCAGAAGATGCAGCTGAAATGGAAAAA
TATGCAAAGGTAATTACAATCAATGACACAAtattttagatatttcaaag
caATGCCTCCCCTTTCCCCTCcgattagcgagtttatgtatctgtgCTTT
TGAGAACGGTATAGCGACTCAAGCGGTTTAGAATGAACCTCAGTTCTGAC
CCGTAAAatcaaggacggtaaaagtgctgatttaccgtcgtcctcagttg
gtcatgatctagtcaaattagaaccttaccgtctccgtcgctgaaaaaga
cacatacataaactcggtattaatGTTGTACGAGAAGGAAATCTGGCTTG
GAGTAAATTCAGCTGGAACAGCATTGTTTTGGGGGAAGAGGGGGAAATGC
TTGTTTTCAGACAGGCATCATGCCATAGGTTCCGTCAATAATTATAGCAA
ATGCACTTATACGTAAACGCAAAAGCTTAATAGGAGAGGGTTTCATGGTT
GTAGGAGCAGCGGAACCAGTCATTTCTTTGAGCGGAGTGGCGGAATTATC
ATAAATTTGGAAAGAATTTAGTCTCCTTATTGGAAACAGAAGGTTAAgct
atttttcccaaaaaagggaaatttggTATGGGGTCGGCTTGTCGCCTCCT
CGTTTCTGTCGTATCAGTTGTGATAAACTCTCCTTATAGAAATACTTGAC
AAAATATGGATACAAATCAAACTGGTTATTGATCTATTCGAAATACTCAT
ATGAAAAAGATCTTCGGACGTTTCAAGCATATTTCGGACAAAGAGTATCA
GGCGTGTTAACGGAAGAAACGTACTCTTTGATGAAACAAGAGCGTTGTGG
TATGTCTGACGTTGGGTTTCGTCTTGGTAAAGAGACGGAGCAGGAAAAGA
AACATGATTTTGTATTGCAAGGTACAAAGTGGACCAAGGTATGTTATAAA
GATTATTTATCTTTTAATTGGGACCGTCTTAAGAATCAACTATTTCTAAG
AAAGGTAGAATACCACAAATTCGGAAAGATGACGGATCACTCAAAATCTA
ATGTTGAGGAAAGCGTATTGTTAAAATCTATAAAAGTCGTGGACACTTTA
TCAGGGGGAAAGAATTACCGATCTTACCCGTGGCTATGCTAAAAATGTTG
ATGCAAATCTAGAATATATCCTccggaaaaaaatatatacggAAATCTAA
AATGCGTGTGTTAACAAAATGAACTTACTTGCTATAAAAGTGGGTACTTG
TTTTCCAGACACCCTGTATATACTACAACCAGTGCCAAAATAGGGAAATT
CCTCacgaaattttataaccacaaacaatttggaagcacTCTAAAATAGG
TTAGAAGAGTAGAGCTccgagttttaacactagacctttaagacttagga
cctcaggatgtgaggatccaaaagtcaaaaatagtCCGGTAGGGCGTGAA
ATATAGTCTAGAagccaataaatccctcccagatcgaaatgtTCGATGGA
ATCAAGTTaaaggcccgaaattgacattctcgctcgaacttcaattttcg
aaaaatggtaaaatagccaaaattttattgaaaatccttcttttattttc
ttcttaGAACACCATACTTTGGGATTTTAAAAGCTTTCCAAAAcattcca
aacaacaaagagaaaaatacaacaaaatcataacaaaatcttttgaaaga
tgGTCAAAACACACTAACCTTCGATTCGAAAAATCTTCATTGAATCCTGA
TATTGTTATCAACATTACAAAAGGTATAactttttatacttttatatacc
atttcaaaatttccaattatGTGTGAttagtaaaaattttcattataagG
TTTGCTGGCAAATTATTGAGATActttattcctatttttatccttttata
ACCTCGATGGGCAAgtggaattttttccaaaaaattaccGAAAGGATGAA
TATAAAAATTTAACTCGAGAAAACGATACAtacttgtctcccgaatagac
gtccccctcccgctaattgttaagaaaaAAAGTCCATCCCCTCCGCTCTT
ATTAAAACCCCcctgctaattaaattcgaatgatgattcaatatttcatt
acagtgtagatagaccttaaacttgttaaaattttcctttttgtcctTAT
TGGTTCTTATGTTACGTGTTCATTtgctaaagtttcttttttgttgctgA
AATTGACATCAGTTATcaaaaattctgtcttcaaattacccccccccctc
ttattccgtctcccccgcttattagaatttagaaaattttcctacccccc
tgcttattcggaccccccccgtctattcgggagacaagagtagtgTCTTC
ATTGGAGTTTACCCGAGAGGTTAGAgaagaatcttcaacctttcttaAGG
AAGAAAAGAGTGAAGCATTAAGCCTCCCGCTGAATTCATAATGGCAGGTT
GAATTTAACgctttgtttgttttcacacggTCTTTTTGTTGAAAGCTGAC
GAGATATTTCACTTTGGGAATTGGAAATAAATGGCTCTTCGGGTGGTTCC
ATTTCCCATTCAAGAGTCTTATCCCCCCTAGCCGCTTCggagctttaaac
tcaatgaatgTTTCATAAAGAATTCATATAAAAGATATTTTCCACTTTTC
TCTAGATTTCCATAGAGATCCTTATCCATTCACCAAGGAATTCAAAGATC
TTGGCCACGCTTTCTACCCACTGAGTCAAAGAGGTCTTGCAGGCGATATC
CATTTAAATCAAGATTTGGTTGAAGGGAAAGCAGATGCAGACTTTAATTG
GCTTTTTACTCATATGATTGGTACGTATTCGTAGTCCATATATTTATATA
CCTACAATCGGCGCcaaaatatattggcacttttgggttttttaacgttt
ttcagagtTTAAAGATCTGGCGAGAATTGCTGGAActtcagtacttccac
taagtttcattggatttttcgatttgggaagGGTTAAGTGACTTCCAGGC
tattttttcagccttattggaacatttttgggcttttagatcctgagatc
ctaaggtccttagtcttaagtctcatgttaaaactcagagttaaaacttt
actttccaaccgtactttaaagcacttaagggctctgaccataaatcaaa
aaattgattttggtattcgAGCATAAATGTTATGTTTCAGGTTCctttac
acttttaacaaagaattgtctTAATTTCTTTGCAGGTCACTCTCTTGGTA
TCGAGCATACAAACGATCCGACCTCAATAATGTATCCAATcaataagaat
tttcaaaacgaggctgacTTTCAAATCTCTACTGGCGATAGATTAGCTGT
TCAACAGTTGTATGGTAAGTttgcaataaatttttttttcatattttttt
tgtaagaatggtgtaaatccatttcatcatggaaatttttaacttctttg
ggaaaattatcctaaaatattcttacaacattcttaggttaggatcttAA
TTCAGACTATacttaacatttagtacatacgtctcaagcataaaatggca
tttttgtgaaagaagcCTTTCTTCGGGgtaattgataatttttaattaaa
aatatgctctaaaaatagcattcttagcttgagtagcaaacttccatgat
ggtgatatttttagcAGTATTCCTataaatttttggccatttttatcatg
gtcattcttataaagtgtattcttataaaaaaaagcgtgtatttagtTTT
TCGTCATGATTTTCTTGATCTCCGActaacaaaaaagttttatatatttC
ATGTATGTGTAATGTATATAAAATGCTATGATTCAAACTGATACAAAGTG
GAAAACTAATGTAGTAACAATTGATTAAGAATAGAGTAGTCTAGCTATAT
GGCATTGATAATAAATCGATAGGTAAGCTGAGTATGGTGGACGCTTGAAG
AGGTGGTTTGTAGCACGTGGAAGCCATATCAACGTGATTATAGGAATCCC
TGTGTCACATAGTAACTGGTACTCCCAATCCTCTAGAACAATTGAGCAAA
ATTTCTTCCCCAGTGGGAAAAATActctacaatttcagccccattgaTTG
AAAAAACAGTCAAACATTTAAGAAAAACATATTGACGACGAGCAAATTGC
TTAAAAATGAATGAACCCTTGTGGGTGAATTATCTTtgaaacaaaatgat
aaaactgTAGTATGACATGAACATGAACAAGAAGTTCTCTgtcctcaaaa
tttcaaatatttatgtaacaaaatttcaatattttttgcagGAAAACCAC
CAGCATTAAAAACAACAGTAAAAACACAAAAGACTAAACCTACAACAGGG
ACGATCCAGACGAGCACAGTAAAACAATCAGTCGATAAAATAACAACAAC
ACCTCCTGCAATGAGAATTTCTACACTGACCACCCCCGCAACAACTACGA
CCTCACCCACAACAACTACGACCTCTCCGACAACAACTAAGACCACTCCA
ACAACAACTACGACAACTACGACCATCCCTAAAACAACTACGACCACTTC
gacaacaactacaacaacccCTATAACAACTACGACTATCCCCGTAACAA
CTACGACCACTCCAACAACAACTACGACCATCCCTTCTAAATCAACAATA
ACCACTCCTTCAAGGACCACTACCACACAATTAAATGTAAATCGTAAAAC
ATGTCCTGAATTCGAAGTCACAGCACTAGTATACTACCCTTTCCATAAAA
GACTATTAGTTTATCTACAAAGCGATAAAATTATGATGGTGAATTCAAAA
GGGGTATCGTACACGACTTCAAGATATGCTCTGATCGCACGTCGCGGTGA
ATACTTGAAATGTGTGGATGCATCGGCGACCGTTAGAATCAGAGCGAAAG
ATTACATGGTAGTCTTTTCTAAAGATAGGTGAGTATGATATCAAGGTCTT
AATTTTTGACTTCCTATTTTCTAACAAACGCACCCAAATAGTGCCATAGG
CGAAGCTATATACCCTGCAAAACTTATGAGGGGTGAAGAgctttatgaca
tattcattttcttttgataaaacaaaggcaataattacagtgtcgtaaaa
accgctctcatccataaattttgcagggtatctggCTACGCCTATGCAGT
GCCAGATTTTGACTATCACTATCGTGTTTCATTTGCTGAGATCTTTAATC
TTtagtaatgtttaaaaatcgggTAAATCCAGAATTAATTTTTGTAATAA
GTGATTTTCAATTTCCTAAAAGAACCGCATTCTTTGGGTCAATAAAGCCC
TTATGTGTACAGTTTTAACACAAAAGTTTGTTTTAATGAAGTTGCTCAAA
ATCGAGTAATTTAGGAAATGTTTGATTTTAGAGCTCTCAAAATCCTTCCA
TATCCCGCGTAAGATCCCCCAAAATCGGAATCGGAATAATTCTTGATTAA
TAAGGAGTAAAGCTATGAAATTTTCACTGGATATCTGTTTTATTGTTCTG
Tatcgaacaaagaaaaaaattttaaacatcataaatttttcttcacaacg
caaattgaacattttttgaGTCCGAAAAATCCGATTAGGGTTGGCTTTTT
GTCCGGTCTTTTCGTTAGAAAGATGACTTACGTATATCCAGAATGAAAGT
TTAGGATGTCATCACTTGGATACATTATGATACTAATCAATGATAGACAC
ATGGTCTTTCGTTATTTACTTTTACTTTTGTGCACTAACATATCCCCTTA
GAGGGGCGTACGGGACTTCgtaataccgatataccgatcactttttctct
caattaccgatataccgataattttttcgttcaaataccgataccgatca
atttttccccattttttaggTACTCGTCCcccggagggggtacttaggca
aaaatgggagCTTAGTATGTGTAGACGATAAAGGTCGGGTATTTCATCAT
CTAAAATTCTCTATAACAATTACCAAACTGTAGCGTGTTGGGTAGGTACA
GGCTGGTAagcaaaagtagaattttggctTAAGATGCCCCCTTGTAGGCT
TATTATTCAGGCGCCCATTTTGGTGGCATTAAACCGAAAGTTGAACTTAA
AATTTAggtcattttagaaacatttaggaaatgcgagcgaagcgagaaag
aAAAATTTGCGACATTGTTCATCTAGATGGATTGAGTAAAGCCTAGCAGA
GGCGTTTTCGTTTCGGGGGGGGGcgagattggaaaaattttgaccttttt
taggGGAAATTTTTTCAGAATAAATTTTTGCTCTAAGCAAGCTCAAAGTT
agcgagaataaggtcacaaaaagtGTAGAAAGCATAAAATTTCATGTCGC
AGAGAGTTTGCTTTGTAAtcttggaaaattttggcctaagaaatatcaaa
cagcttaaaggaggccttaaaaaggtcaaaggtagccagaaaaaggtcac
aaaaacTACAAACCCCTTCAAATTCTGTTGggaaaactttgacctttttg
gtcactaatttttttctttggtgGGGGGCGATCAATTACAGTTTAGGATa
atttcaagattttggcgttCAAAAAAGCTCAACTTGGGGAGGCGTGACCC
CCTGTCAAAACGCCAATGGATCGAAAATGGGAGTTTATCAAAGAGTAGAA
CGTCAATTTAGAGAGCGTCACTGTATTCACGGCAGAAAAATGGTCATTCA
CGTGTCAAACAGACCCCTGGCTGAGCCTCTTGCCTTATCAAAATTGCAGC
AATGATTTTTCAAATCGGCGCCCCTGAGTGTTCCTTAATTTGTACTAATT
TACGTATGAGGGAGGGATTATTTAGTAGATCAGCGCTCAGAACATATTGT
TCATATATTCGAATAGTAAAGGAGGCTTtggccaaatagaaaatttttga
aagtcaaccAAATAACATAAACTCGAGATCTTTAGAGTAAATGGTCATTC
ttcatataaatttttattttaaacaatataTCGACCTCCTTTAGTATGGA
CGTCTTCATCGGGTTTACAAATGTTCAGTTGAGATCATTGTTTTGACGTC
ATATGACATTAATGCAATGACCTCAACTTAGTATGCGACAGCATTGGTTT
CCAGATTTAGACCACGTTATGTGTCGCCGTCTCACGGAACTGGATCTCCA
AATGTTTATAAATGTATGTTCTCTTGATTTGACAGTGTATGCAAAAGAAG
TAAGGTATAAGCTGTTCTGTTTTTATTTCAGCTATTTCCTGTATCATTTA
CGTTATTTCCAATTCGCATCTGGTCCTCATAGTATACACAATGGTCAAAA
CCCGCTCAAACTTAAAATGCCACCTTGGGTCCACAAAATAGACGCATCAA
TGACCATAAAAGGACAACTGTATATTTTCAATACGAGATATGTATGGAAA
ACGAACTTAAATAATTTACAGATAACAGATGAGGGGCAAGCCAAAAACAT
TCAGAATGTCTTCCCCGGTGTACCGAATGATTTGAGTGCAGCATTCTCAG
GTGTTCACCAAGAGAAAATGTTGACATATTTCGTTAAAAATGACTTGATA
TATTTATACAATGAAAGGTAAGAAggcctttttaactttttaagatAACA
CCTTTTTTTCGATTGtagccactgacctttatatccctggaccaatttat
atctgccatctttgatcgaagattttgcttggccgggattgagaaacttg
atccagggtttataaaggtcagtgattgtAACCCTACTTTGAGTCAATTT
TTGAATATCACGATGTGACGACAAATCTCGATTCTATATTCAACGCGCAC
TCAGCATAAATTAAAGTAACTATGACAATCATCTGAGGTCTTGGATGTAG
GTAGCGAGACCCTCTCTAAAAGTTGGGATTTTCATGTTGTTTCTTAGtga
ggattttcaaaaaatagaagCCGGGCTCAAAacacgtctagtataggcta
ggaTGAAGGCCGTGCTCTCCATTTCTGACTATTTGAATAATAATGTGATT
GAGACATGTGCGATAACTTTCTTATTGGTCCGTCTTCACAgtttaaattt
cttaaattgttctagGCAACTCCCTATAAAAGGTTTACTCCGGGAAATTC
ACCTTCCTAGGTGCCTTTGAAAAGAAGGTTTAGAATGAATAGGGACTTTT
TTGGTCAgctaaaagttatttttaaaatcaaactaGAGGACTtttcagta
gcgtagacagaacaggcgcaaaatttgtgtaggagagcagatttttatga
aactctaattatcttttttacattttgaatAGGTAATTAcaatgtcataa
aaatctgctctcctacacaaatctTGCGCCCTTTCTGTCTACGGTACTGC
TTTTAAGGTCCGTGTgggttgaaaaaaattaaaaggatCAAATTTAGGTA
GTAACATTTTAACAAGACACTTCTTACataaatcattttatttttgtctC
GTTTTTTCTTACTAGAACGAAGAAAGTTATGGACGGATATCCAAAACATT
GGGGAGAAACCATTTTGAATTGCAAGGATGCCGGCAAAAATGTTATAAAC
GTCCGACACTGAACACAGGATGAAGCTTTTTGACCTATGAAAAATGATCA
GCCTTTTGACTGGAGGAGAGTATCGAAAAAATATGAATGAAGAATGTATA
TTGAGTTTATCGTTCTTCATCTGCAATTGGGctgttccagaaaaaaaatt
tacccccactgttgaagatattaattttttcgaagtatcgaaccccctgg
atatcctactctATTAGTAATCCCCACCCGTTGATTTATAAGTATCCCCT
GGATTTCCAATCttaaaatatgctcaaccccctggatatcctctcttata
aagatgcttagcCCATGGATATCGTATTCTTTActttgaaaagacacttt
acccctggatatccgctcccttgtagatatttaaccccctggatatccac
tttttaacaaaaatcattaaactcctggatatccgatatcctcaacaggg
gggtaTGGACTAtttctgaaaaagcccattTCAGCTTTGAGCTTTGTTAG
GGCAATATGGTGATAGGCTTTTTACCTTCACTCATATGAATGAGGAAGAT
CTGCTCGTTATACTTGGTGATATTTGAAGGATTGTTTTCAATGAATTAAA
GACGAGaagattttttagaatttttttcaaactttaaaaaatatgaaCGT
AACGATATTCGAATATCGGACAATAAGGTGTCCAAATGGCTTTAACACAA
TGAgcacaaacgtcttttggaagtctaatgtacgtttctaggacgtccaa
aGGTCTTAAAGCCGTCCATTGAATGTCCNcgtctaatgtacgtttctaAG
ACGCCCAAAGGTCTTAAAGCCGTCCATTGAATGTCCATAAGACGTTGCGT
GCCCATAGGGAAAGCATTTGGTTATCAGATGTTTTGACCTGCAGATACAT
CCTGTTGTCCTGATTAAAACCTCCATGAATGTTTGTCTATCTAAAGTCGA
GAtatcaaagtttgaaatttctaaaaatggaTTCTTACACGTTCCTTTAC
gtcaaaattctattgttctcacaTTGCTAAAATTCCAAAACTGAAAGTCT
aaaacttgtaacttaaatatctcgattttggaaaatagtaaggcaaaaat
attttgaggtttaGC

Coding sequence (CDS) from alignment at scaffold_62:291699..301463+

>TCONS_00071584 ID=TCONS_00071584|Name=TCONS_00071584|organism=Clytia hemisphaerica|type=CDS|length=1887bp|location=Sequence derived from alignment at scaffold_62:291699..301463+ (Clytia hemisphaerica)
ATGATGGAACTAGGGAAAATTCTATTGGTCAGCATCGTCATTGCAACTGT
TTCTATTAAAGATTCTGTCAACTCAGAAGATGCAGCTGAAATGGAAAAAT
ATGCAAAGAAATACTTGACAAAATATGGATACAAATCAAACTGGTTATTG
ATCTATTCGAAATACTCATATGAAAAAGATCTTCGGACGTTTCAAGCATA
TTTCGGACAAAGAGTATCAGGCGTGTTAACGGAAGAAACGTACTCTTTGA
TGAAACAAGAGCGTTGTGGTATGTCTGACGTTGGGTTTCGTCTTGGTAAA
GAGACGGAGCAGGAAAAGAAACATGATTTTGTATTGCAAGGTACAAAGTG
GACCAAGAACACCATACTTTGGGATTTTAAAAGCTTTCCAAAAcattcca
aacaacaaagagaaaaatacaacaaaatcataacaaaatcttttgaaaga
tgGTCAAAACACACTAACCTTCGATTCGAAAAATCTTCATTGAATCCTGA
TATTGTTATCAACATTACAAAAGATTTCCATAGAGATCCTTATCCATTCA
CCAAGGAATTCAAAGATCTTGGCCACGCTTTCTACCCACTGAGTCAAAGA
GGTCTTGCAGGCGATATCCATTTAAATCAAGATTTGGTTGAAGGGAAAGC
AGATGCAGACTTTAATTGGCTTTTTACTCATATGATTGGTCACTCTCTTG
GTATCGAGCATACAAACGATCCGACCTCAATAATGTATCCAATcaataag
aattttcaaaacgaggctgacTTTCAAATCTCTACTGGCGATAGATTAGC
TGTTCAACAGTTGTATGGAAAACCACCAGCATTAAAAACAACAGTAAAAA
CACAAAAGACTAAACCTACAACAGGGACGATCCAGACGAGCACAGTAAAA
CAATCAGTCGATAAAATAACAACAACACCTCCTGCAATGAGAATTTCTAC
ACTGACCACCCCCGCAACAACTACGACCTCACCCACAACAACTACGACCT
CTCCGACAACAACTAAGACCACTCCAACAACAACTACGACAACTACGACC
ATCCCTAAAACAACTACGACCACTTCgacaacaactacaacaacccCTAT
AACAACTACGACTATCCCCGTAACAACTACGACCACTCCAACAACAACTA
CGACCATCCCTTCTAAATCAACAATAACCACTCCTTCAAGGACCACTACC
ACACAATTAAATGTAAATCGTAAAACATGTCCTGAATTCGAAGTCACAGC
ACTAGTATACTACCCTTTCCATAAAAGACTATTAGTTTATCTACAAAGCG
ATAAAATTATGATGGTGAATTCAAAAGGGGTATCGTACACGACTTCAAGA
TATGCTCTGATCGCACGTCGCGGTGAATACTTGAAATGTGTGGATGCATC
GGCGACCGTTAGAATCAGAGCGAAAGATTACATGGTAGTCTTTTCTAAAG
ATAGCTATTTCCTGTATCATTTACGTTATTTCCAATTCGCATCTGGTCCT
CATAGTATACACAATGGTCAAAACCCGCTCAAACTTAAAATGCCACCTTG
GGTCCACAAAATAGACGCATCAATGACCATAAAAGGACAACTGTATATTT
TCAATACGAGATATGTATGGAAAACGAACTTAAATAATTTACAGATAACA
GATGAGGGGCAAGCCAAAAACATTCAGAATGTCTTCCCCGGTGTACCGAA
TGATTTGAGTGCAGCATTCTCAGGTGTTCACCAAGAGAAAATGTTGACAT
ATTTCGTTAAAAATGACTTGATATATTTATACAATGAAAGAACGAAGAAA
GTTATGGACGGATATCCAAAACATTGGGGAGAAACCATTTTGAATTGCAA
GGATGCCGGCAAAAATGTTATAAACGTCCGACACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044478XLOC_044478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071584-exon-scaffold_62-1491911889:291699..291857TCONS_00071584-exon-scaffold_62-1491911889:291699..291857Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:291699..291857TCONS_00071584-exon-scaffold_62-1510915933:291699..291857Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:291699..291857TCONS_00071584-exon-scaffold_62-1575043694:291699..291857Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1491911889:292488..292736TCONS_00071584-exon-scaffold_62-1491911889:292488..292736Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:292488..292736TCONS_00071584-exon-scaffold_62-1510915933:292488..292736Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:292488..292736TCONS_00071584-exon-scaffold_62-1575043694:292488..292736Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1491911889:293406..293571TCONS_00071584-exon-scaffold_62-1491911889:293406..293571Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:293406..293571TCONS_00071584-exon-scaffold_62-1510915933:293406..293571Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:293406..293571TCONS_00071584-exon-scaffold_62-1575043694:293406..293571Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1491911889:294454..294618TCONS_00071584-exon-scaffold_62-1491911889:294454..294618Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:294454..294618TCONS_00071584-exon-scaffold_62-1510915933:294454..294618Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:294454..294618TCONS_00071584-exon-scaffold_62-1575043694:294454..294618Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1491911889:295034..295162TCONS_00071584-exon-scaffold_62-1491911889:295034..295162Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:295034..295162TCONS_00071584-exon-scaffold_62-1510915933:295034..295162Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:295034..295162TCONS_00071584-exon-scaffold_62-1575043694:295034..295162Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1491911889:296090..296726TCONS_00071584-exon-scaffold_62-1491911889:296090..296726Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:296090..296726TCONS_00071584-exon-scaffold_62-1510915933:296090..296726Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:296090..296726TCONS_00071584-exon-scaffold_62-1575043694:296090..296726Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1491911889:299030..299365TCONS_00071584-exon-scaffold_62-1491911889:299030..299365Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:299030..299365TCONS_00071584-exon-scaffold_62-1510915933:299030..299365Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:299030..299365TCONS_00071584-exon-scaffold_62-1575043694:299030..299365Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1491911889:300264..301463TCONS_00071584-exon-scaffold_62-1491911889:300264..301463Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1510915933:300264..301463TCONS_00071584-exon-scaffold_62-1510915933:300264..301463Clytia hemisphaericaexon
TCONS_00071584-exon-scaffold_62-1575043694:300264..301463TCONS_00071584-exon-scaffold_62-1575043694:300264..301463Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071584-proteinTCONS_00071584-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:291699..301463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.11307e-07	6.94934e-07	4.84606e-07	1.55707e-06	1.72225	1.01789e-05	2.68089	1.57834	1.42854	1.78288	2.01261	1.63496	5.4444	6.3125	1.53264	1.57189	2.32808	2.02181	8.10646	11.7273	6.03653	5.50592	3.68122	3.59252	6.60428	6.07615	2.4656e-06	4.4777e-06	8.86977	12.1177
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021190Pept_M10A
IPR018487Hemopexin-like_repeat
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR001818Pept_M10_metallopeptidase
IPR000585Hemopexin-like_dom
IPR002477Peptidoglycan-bd-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0031012extracellular matrix
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00071584 vs. Swiss-Prot (Human)
Match: MMP25 (Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP25 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.909e-29
Identity = 76/253 (30.04%), Postives = 124/253 (49.01%), Query Frame = 1 
Query:  163 YLTKYGYKSNWLLIYSKYSYEKDLR----TFQAYFGQRVSGVLTEETYSLMKQERCGMSDVGFRLGKETEQEKKHDFVLQGTKWTKNTILWDFKSFPKHSKQQREKYNKIITKSFERWSKHTNLRFEK----SSLNPDIVINITKDFHRDPYPFTKEFKDLGHAFYPLSQRGLAGDIHLNQD--LVEGKADADFNWLFT---HMIGHSLGIEHTNDPTSIMYPINKNFQNEAD-FQISTGDRLAVQQLYGKPP 879
            +LT+YGY        ++    + LR      Q + G   +G +   T + M++ RC + DV   LG      ++  + L G+ W K T+ W  +SFP+ S+  +E    +++ +   W   + L F +        PDI+I+  + FH+D YPF      L HAF+P  +  ++GD H + +     G  D +   LF    H  GH+LG+ H++ P SIM P  +    + D +++S  DR  +QQLYGK P
Sbjct:   35 WLTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKPRCSLPDV---LGVAGLVRRRRRYALSGSVWKKRTLTWRVRSFPQSSQLSQETVRVLMSYALMAWGMESGLTFHEVDSPQGQEPDILIDFARAFHQDSYPFDGLGGTLAHAFFP-GEHPISGDTHFDDEETWTFGSKDGEGTDLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPDKYRLSQDDRDGLQQLYGKAP 283
The following BLAST results are available for this feature:
BLAST of TCONS_00071584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP251.909e-2930.04Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP... [more]
back to top