TCONS_00072070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072070
Unique NameTCONS_00072070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072070 ID=TCONS_00072070|Name=TCONS_00072070|organism=Clytia hemisphaerica|type=transcript|length=1778bp
atataaacaaaataatGACACGAGAAGCTGGGGCACAGTCTCCTGTTGAC
CCCTCTGTGGATGAACTGAAGACCAAGCGAGGTCGGAAACCTTCGCAAGC
AAAACTTGCCATGTTGGAATCTAAGCGTTTATTTGCCGACAAAAGGAGAT
TTCCAGATGATAATGGTGATGGGGGTAACAAGAAatccaaaaagaagaaa
agctcAACAAATGATAAAAACAAGAAGAATTCTACCCCTGCAGCATCCAC
ATCGACAACAGCATCAGATTTTaagaacatcaatttgaaaaagaaaaaga
atgggAAGgGAAAAAATGGAGAGAGCAGTTTGAAAGGTAAATCAGCCAAA
AATGACCATGAGAATGACCGTCGCAAGAAGAGAAAAGCTCCATCCCGATA
TCGTACTGAATCCACTGATGATGATGCTAATAGCTCAGATGATGAATTCT
GGGACGCAAAGAAATCAGgTGGTCGACATAATGATTATTACGACGATCGG
GAAGATTTCTTCTTCGATTCTGATTCCGACGATGACCTCGATAACGAACT
CCTTCAAAATTCGGATGAAGATACAGAGGACGCAAGTGAAACTGATATGG
CCACACTGGAAGAAGAAATATCCGAGATGAAAGAACAGATGTATCAACAA
AAGATAAAGGAATTGAAAGGCAAACTGGAAGAGCTTGAAAGAAGGACACT
TCCGgaattcaaatccaaatttGAAGAACTGAAACGCGAGAAAGAAGACT
GGATCCGAACGGCGTACGCGTACAAGTCGTATGAGGAGCGTGAAATAGAC
CGCGAGTATGAACGAGAAAAGAAACAAGCCAAGGAAGATTTTGAGCAAAA
GAAACAAGAACTGAAGGAACACTTAATCGCCGAACTCAACGAAAAGAAGA
GATTGATAGAAAACGAAAAGACCACCCTGGAATTGAGCGGTGGTATCGGC
CCCATACTTCCTCTTGAAGTCAAGCCGACTGTCACACGGAAATTACGACG
CCGGGGGCCAGAACCACTTCCGGTGGCCGAGAAGAAACGCAAGACGAATT
CGACGCCGTTGAACCTTCTGTTGAACGAAGAACAAATACTGGCAGACTTG
AAGAAGATTGGAAAACACCACAAACCTCATAGTAGTAGTACGAGTGAAGA
GAAAACACCGAAACCAAGCAAAAATGCAGACAAATGTGACCCTACAACTT
TCCCTGACGGAACAGACGccaaaatcaaagatgaaaaacTTTTCTATAAT
AAAGAATGGTACCAAAGTGGTGATCCAGTTTATTTGAATAGTCGTGATGG
GGAACGATTTCAcGCGCAGATTCATTCAATTACGAGTACTCGAGAGATCT
GGATCAAGAAACTAACGGAAGGAACACGATTGAAAATTTACGTCGGTCAT
TTACAACGCGGTAAATACGCCATCGAACGACGAGAAAAGAAATAACAAca
ttttctcgttttttttgTTATTCCCTCCCTTTTTTATGTATATAGCATTT
TCTTGAAtataatttatattttattttgaccctctactctcgggtaccta
atagccgggggagttggaataagcaggggggttggaaaaaatctcaaaat
ttaataagcggggggggggggtggaataaaaatgtcctgggtggaaaatg
tttgaaaaggaggctcatacagcagaattaagacaaaaaagggaactttc
aaaaacatttccccaaaaattgataagcgggggggttggaataagaatgt
cctgggtggaaaattttcgaaaaattaa
Run BLAST on NCBI

protein sequence of TCONS_00072070-protein

>TCONS_00072070-protein ID=TCONS_00072070-protein|Name=TCONS_00072070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
INKIMTREAGAQSPVDPSVDELKTKRGRKPSQAKLAMLESKRLFADKRRF
PDDNGDGGNKKSKKKKSSTNDKNKKNSTPAASTSTTASDFKNINLKKKKN
GKGKNGESSLKGKSAKNDHENDRRKKRKAPSRYRTESTDDDANSSDDEFW
DAKKSGGRHNDYYDDREDFFFDSDSDDDLDNELLQNSDEDTEDASETDMA
TLEEEISEMKEQMYQQKIKELKGKLEELERRTLPEFKSKFEELKREKEDW
IRTAYAYKSYEEREIDREYEREKKQAKEDFEQKKQELKEHLIAELNEKKR
LIENEKTTLELSGGIGPILPLEVKPTVTRKLRRRGPEPLPVAEKKRKTNS
TPLNLLLNEEQILADLKKIGKHHKPHSSSTSEEKTPKPSKNADKCDPTTF
PDGTDAKIKDEKLFYNKEWYQSGDPVYLNSRDGERFHAQIHSITSTREIW
IKKLTEGTRLKIYVGHLQRGKYAIERREKK
Run BLAST on NCBI

transcript from alignment at scaffold_70:74996..87512-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072070 ID=TCONS_00072070|Name=TCONS_00072070|organism=Clytia hemisphaerica|type=transcript|length=12517bp|location=Sequence derived from alignment at scaffold_70:74996..87512- (Clytia hemisphaerica)
ATATAAACAAAATAATGACACGAGAAGCTGGGGCACAGTCTCCTGTTGAC
CCCTCTGTGGATGAACTGAAGACCAAGCGAGGTCGGAAACCTTCGCAAGC
AAAACTTGCCATGTTGGAATCTAAGCGTTTATTTGCCGACAAAAGGAGAT
TTCCAGATGATAATGGTGATGGGGGTAACAAGAAATCCAAAAAGAAGAAA
AGCTCAACAAATGATAAAAACAAGAAGAATTCTACCCCTGCAGCATCCAC
ATCGACAACAGCATCAGATTTTAAGAACATCAATTTGAAAAAGAAAAAGA
ATGGGAAGGTATAAAATGTGCTCTAGTTGGCAATTTTATTGTTTTTGCCC
AAATAAGGCCTAGTTTTCTTATAATGCGGATAAGATTTAACCTTAGAAGG
ACCATTTGACCCCTTCATACAGCCAACAACAAGGACCATATAATTGGAGT
ATTCCGTATCTGATGTTGGTAGGGAAATTTTTCTTTTTCTATCCCTAGAT
AGATTATCCCTTTTATCTTTTATGCCTAAACTTTGACTGACCTCTGTTAT
TCTGTTTTTATTCTCAATTTCAAAATTATTTAGGTTCCCAAACGCACGCC
TGTCTGTTGAGCTAGGACGACCTTGAATGAAAATGTCCTTGTGTCATAAA
TAAGCCCAAGATCGTTGATTTTGAAGCACTTTCGTTTTAGGCTAATTTGT
ACACTTTAAGACCAAAAATTAATGCCCAAAAGGAACGACTTGAAAGTATC
CCTTTAGGGGTAGGGATGAATAATACATCTGAACATCGAATTGGTTTTGA
ACGTGAACTGGGAATCGAAATTCTTTATTTTAGGGAAAAAATGGAGAGAG
CAGTTTGAAAGGTAAATCAGCCAAAAATGACCATGAGGTAATGATTTATT
CATCAATTCGTTTATTCATCGATTTGTTTATTCCTTTAACCCTTTGCGTG
CCGTTACCTTGTTTTTGTACCCCAATCCATTTGCCGAGGGGTAATTTTTT
TTAGTAACCTGATTTGCCGATGTCGCATGCAAATTTTAATTCGTGTTGCC
GCATGTCGGATATATACGACAAGGATATTTTATTCCTAATTGCCAATGTT
TGACATTTGTATTTGACATTTGTTTTATATATATTTTATGATAGACTAAA
ATAAACCTGAAATAAATCTTTTGAGCACTTAATATATACTGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAATTTG
ATGTCGGATATATCCGACATTGGCAAGTAGAGTGAAAATTTGCATGTCGG
ATATATACGATATCGGCACGGAAAGGGTTAAAATGTCCTTCAATTCAACA
CAGACATATTTACTAAATTAAGAACAGGTAGAAAGTTCATTTGCAATTAT
ACAAATCTTTTTAAATTATTATGGGTACAACTGTTCAATAAAGGAAAAAA
AGACAATAGATTTTGGTTGGAACAAATTGTTACCGTAAGTTGGTCTAATG
TCGACATCCCTAATCTAATTCGGTCACAAAACTTCTTTTTTTTAAATCGG
TGATTTTAAATCGGTGATTTCGACCTTCCTTTTAACCCTATCTCTATAAA
AAAGTGGCAGAACTAATGAGAGATGTCGACATTAGACAAACTTACGGTAA
AGTCTAATTATAATAGCCGCTTCATATCAACCAAAAACTTCACCTATATT
TTTTTTTGAGATTTTGTGTTGAAACCTTTTTGTTTTTCTTTGCTAATTCC
ATACAATACTTTTCTACATGCGCTCAGAATGACCGTCGCAAGAAGAGAAA
AGCTCCATCCCGATATCGTACTGAATCCACTGATGATGATGCTAATAGCT
CAGATGATGAATTCTGGGACGCAAAGAAATCAGGTATTTATTATATATAC
ATACCATTTAATTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACC
TGTGTTTGTTCGTCCGTCCGTTCGTCCGTCCGTTCGTTCGTCTGTTACCA
ACTTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGCATG
AAATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAACGACTAATTTT
AATAGATCGTCACTATTTGTGTTGTGAATGATTGTTTAACGGTAATGCTC
ACGTAGATATCAATTATATTTGTTAAATTTATAACCAGGTAGGTCCATAA
AAGTATCACTTGTTTTTTCGACCGCAACAATTATTTCCCTTCAGGTAATT
TACCTTTTTGATTAAAAAAATATTATTCACAAAAAATGTTTCAATCCACC
ATAAACCAAAATTATCTGTAAAGACAAATCTTCTTAAAATACAGTGTGTC
TCGAAATCTAAAGTGGACACATTTTCTCATAATTTATGCCAAATTTTATG
ACTCGTGTACTTTTAATATTTCATCTCAAAAACCTAATCAACTATCTTTT
GGGGAACATTCTGTGAAATTTTTATGGTCATAGTGGTGTTTTCTAGTTTG
ATTGTCATTTAACAGGAATCGATTGTTTTGAAATTGAACGTTCGTAAAAC
AAAAAACAACAGGCTTTACAAGAGTAAAAGTCAGTTCTACAACTGGAGAT
ATTTTCATGGAAGATTTAGGTTATTTGTTGACCTACAATGGGCTTTTCCA
GAGAAAAAACGTGCACCCCCTGTTGAGGAGGTCCAAACCTTTGTGACCTA
CCCCCTTGGAATTCCAGGCAATTTTAGGATCATACCCCTCTGGAATTCCG
AATTTTTACAAATTTTCAATCATTACCCCCTATTCCGCTTATTTTTGACG
GATTTTCGTCTACCATTATGGAATCCAACTGCATTTCAAACCTTACCCTC
TTGGAACGGAAATTGACCTCCTCAACAGGGGGTACACGAGACATTTTCAT
GGAAGATTTAGGTTATTTGTTGACCTACAATGGGTCAAGAATGTCATATC
TATGTATTACACCAATTATTAAAGTTTAATTTGCTTTTATTATTATTTTA
GGTGGTCGACATAATGATTATTACGACGATCGGGAAGATTTCTTCTTCGA
TTCTGATTCCGACGATGACCTCGATAACGAACTCCTTCAAAATTCGGATG
AAGGTAATGACATTTTATGCAGATAAGAAAAAAGCTCTTCTAGAAAATGT
ACGTACATGGGGGGGGATGGAGAATATATCGTCCGGAGGGTAGTGAAAAA
TCTACAAAAGTTGCCTTGTCCGGGGGGTAAGTTTGCTCTGTTTGGGAATG
ATTTTGAATGTTCGGGTGGTTAACTGATGCTTGTCCGGGGGGTTAGACCT
GTTGTCAGGGTGTCAAATGTCACAATGATTGGAAGGGTAAATATTTCAAA
AATGTTGTATCCTCCACCCCCAAAATTCAATTTTTTTCTGGAAGACCCCT
GTCCCCAATAGTGTAAAAAAATCTCAAGCTAAGTGCTAAATATTGACTAA
AAAAGTTTATTAGTTTCAGCACTCCTCAGTTCATTTAACTTAGTTGATCG
CCTCGTGTTCTCATAGATTAATTTCCCTCTTGATACAGAGAATGAAGTTA
AAACCATTGACTTCAAAGTCCCGAAGGGGCTAGACCCGAAACTATTGGAT
GGGAAACAAAGCCACTTATTTCCCATCCAAAGCGCATGACCCGTGTCGTT
TTAACACAAAAGCCAGATTGAAAATAAGACCAAACTCCAGATTTCGAAAA
ATATGCCACTTAAGAAAACTAAGAAATGGCTAGATTCAATCCTTCATTCA
AAAAGCGGCGCAAATCAAGGCTTCACTTCTTCTTACTTGAGAAAGCCCCT
TCCGGTTTTTAATCTCAATGATTATATGATTTAAGAGAAACTGGGGTGGA
GTAGGGCGTAATTAGAAAGGAGTAGGGCGTAATTAGAAAGGAGTAGGGCG
TAATTAGAAAGGATTATGTATTAATTATTCTTCTCTTAGATACAGAGGAC
GCAAGTGAAACTGATATGGCCACACTGGAAGAAGAAATATCCGAGATGAA
AGAACAGTAAGCGGATATCTTTTAACCCACTGATTTCTAACTACTTGACT
GGATAGAGCTTCCCATATTAAAGAGGAAGCGTGTCCAGTTTAAGAGCTGA
CCAGTCCGCCATCTTGTTTTCAATTCTGGTCGTCAACAGCGCGATTCGAA
TGTTTTGAAATTCGAACGTTTGTCGTTCGAAATTTAAGGTAAATTGGAAA
ACAACATGGCGGCTGGACAAACTTCCACAAAAAATCTATGAGCCTATCTA
GTGTGTAAAGGATTTTTACCTATAACCCCTAAATTCAATTCTTATACGTG
AGCCAAAATTAATGGAGAGATTTTGGATAGTCTTTCGACGATTTGTACTG
TCAACTTTTGATTCTTTGCGGGGTTCTTACCATGTGGCGTTGTGACTTAA
ATGAGACAGGGGACCCCTTTCATTACGGCCCTGCCTATCAACTAGCTTGG
TTATCTCGGAAAAGAAATTGAATAAAACAAGATAATACTGTATAAGACCC
AAATAAAAACCTTCCAGTTGGACTGTTTTCCTATTCTACATCCGAAAGAA
ATTATTTTATATATTTTTGAATCTATTTGTAAAAGTAGAAAACTCTTTCC
GTAATAATTAGCATCAACACGGTAATATCAGTGAAATTCGTCTAACAGGG
GTCTTACTTAGGTCCGGTGAACGGCGAAGGCTCAAGGCACGAAAAAACTT
AAAATTCACCGGTCTAAAAATTAGGTTTCCCGTCTTATGTAAGTACATAT
TCACGTTAATCAATACACCGGGGGTTTGCTAAGAATTCGCTGGCCTAGAA
AAAAGGTAGATAGTCTACTGGTCTAAAATGCTAATTTTAGACTAGATGTA
GATGTTACCGGGTTTTCGGGCTCCAAACATTCGATTTTTTGACGTCACTT
TTAGTTTTCGAAGCTCCTGCAGTAGCGAAAAAATCGAACTTGCGTCAAAG
CACTTGAAAGACTTCTATTTTTCAAAAATCGTCAAAGTGGAACTCACTGG
AATGAAAAATCCCTTTTTTTTGTTGAGGTGCCCGCTAGTATAAAATAAGG
ACTAGAATCTAGAATTTCTTGGAGTTAACTTTCATTTGCAAGCCCCTGTT
AAAAACAAAGCAAAACCCCTGTTTTCTTATATTTTGTCTTTATTGAAACT
TGACGCTTTTTCGATATTAGGATGTATCAACAAAAGATAAAGGAATTGAA
AGGCAAACTGGAAGAGCTTGAAAGAAGTAAGGTTTGATTATGTATTCATT
CGAAGATATCACGATATCAGTTACAGCTGCCAATTCTAAGTAATATAGTA
TAAAAGAAAGTCCGAAATGAGTTTTTTTTTTTTTTCAACAAAATGAGTTG
TTTTTTTTGTTTTTGTTGTTTTTCATATATTGAGAAGTCGAAATGAACCT
TTGACTTTTCTTTTACTATAATGTACCATGGTTTTATAAGATTCTATAGG
ATCTGCATTGGGTGGCATTTACTGCGAATGAGAAAACGTCAGTGCTCGCG
TAGCCTTTCCCCGACCCTGGGCCACGGGCTATTGTACATTTTGAAAAATC
TTACTGCTTGTCATTCTTTTTCGGTTGAAGAATTTTCTCCCAATAAATGC
TTGTAAGGAAATTACACTTTGTAAGGAATTACACTTGGTAGTTATGGGTA
ATCAGAAGGTCTTAATACAAATAGTGGGAAAACATCCTCCACATTGCCCG
ATAATGGAAGAAGAATCTCTCGAAATGTAGCTAAACGTAAATCTCGTGAT
CCAAGCCACGATAAACTTACAATACCAATAAATGATGTTAATAATTCCAA
CACATTTTCCATCGATTTTTTCCACTAGGGACACTTCCGGAATTCAAATC
CAAATTTGAAGAACTGAAACGCGAGAAAGAAGACTGGATCCGAACGGCGT
ACGCGTACAAGTCGTATGAGGTAGCTTTCAAAATATGTTAAGAACTCTAT
CACAGAGATTAAGACCATGTTCAGACGTTACTGCTCCGTATCGTTCCGAA
ACGAAACGGTTCTGAAACAAGTGTCAAAAAAGAAGACGTTGCAAAGCAAA
ACAAATCGAAACGGTTTCACTCCACTAGCGAGATTATGTATCTGGAATTC
TCTACGGCTACGGTTAAAGCGGCGAGGGAAATGGCGAGTAAGGCAAGTAA
TGGCGGGTGACAGCAAGTTCGATATTTGACGTACGGCATTATGTCGACTT
TGCTTATACGGTGTTTTAGTGTTTTTCCCGTACAAAGCAAAGTAGACAAC
GACATGTCGCCTTTGGTGGCGACCCGCATGGGCAGCCCCGCAACCGTAGC
CGTAGAATATCTCCGATACATAATCTCGCTACTATTTTCATCGTTTTCTT
GCTCCGAAACGTTCCGAAACCGATATGAACACTCTCGATCCGTAACTAAC
ACCATACCGGATCGATACGAAACCGCAACGTCTGAATATGGTCTAAAGGT
CATTGGTCTTGGCTAGCTACGAACGAGGATATACAATGATTCTACAGTCT
CGCTATTTCGAACTTGAGCAGGGAATCNGGTCATTGGTCTTAGCTAGCTA
CGAACGAGGATATACAATGATTCTACAGTCTCGCTATTTCGAACTTGAGC
AGGGAATCCAATTCGTTCGAATAGCAGAGAGATTCGAATTATTGAAAGTA
TTTTAAGAGGGTTTCTCCTTGGTTGGGCTGGATAATAGATAATAGAAAGA
ACGGTTTTCAAATGAACTCATTCTCAGAAAGTTTTAGATTTTCACGAGTT
TTAGGGGCAGTCTCTCTTGATAACCCTCCAGTTAAAACCCGTTTACCGTA
CAATGGGATAAAATTTCGTGGGGATTATTTTTCGCGCATGACATCATAGA
AATTTTGAAAGGGCTCAAGCGCCAAACGTTTTAAACAAAACTCAAGAAAT
GTTAAATAAACTACTTTTTTAATGTTTACTGACATCAAAGAAGCGCTAAT
AATGTGTATTTCAACAACCATCATGCATGATTTGGCGGTAAAAGGCGTGA
AAATATTGTCTACTAATAGTGTATTTCGCGAAATTGAGCTCAACCGCGAA
ATTTAATCTATCTTTATTTTTACAGGAGCGTGAAATAGACCGCGAGTATG
AACGAGAAAAGAAACAAGCCAAGGAAGATTTTGAGGTATAATTGAAATTT
ATCTACTTCGTGAATTCACCCTTGAGGGAGTTAATCTAAAGAATCCTATA
TTTACTAAAAGTGTATTTCTGAATTTTCAGCAAAAGAAACAAGAACTGAA
GGAACACTTAATCGCCGAACTCAACGAAAAGAAGAGATTGATAGAAAACG
AAAAGACCACCCTGGAATTGAGCGGTGGTATCGGCCCCATACTTCCTCTT
GAAGTCAAGCCGACTGTCACACGGAAATTACGACGCCGGGGGCCAGAACC
ACTTCCGGTGGCCGAGAAGAAACGCAAGACGAATTCGACGCCGTTGAACC
TTCTGTTGAACGAAGAACAAATACTGGCAGACTTGAAGAAGATTGGAAAA
CACCACAAACCTCATAGTAGTAGTACGAGTGAAGAGAAAACACCGAAACC
AAGCAAAAATGCAGGTTAAATAGCTTTTCTCACCGTTATCTGAAACACAA
TTGACCTTAAAATGGGCGTTCTATTTTATATCTATACCAGGGGGCGGACG
AATATTTCTTGGCGGTCTCAGGAAAGTTTTTTCGCGTTGAAATGAAAAGT
TTTTGGAATTTCCAGAGACTAATTTAATTCTCTAAGGGGTTTAAAGTTAT
TCTGAAACTTCCAGAGATTAAATCCATCGTCCCTTAAAAGAATGAACAAG
AATTTTCCGTAGGGTATTTTTTGCAAATTTTGCCATTTTTCCAGGCAATT
TCCAGGCATTTTTCCATTTTCATCCACATATTATTAAGAATTTTTTGGTT
TGCAAAAATTCATCCACCCCTCTGTATAGATATTAAATAAAAAATAAACC
AGCAGACTTTGTGTTTTTTCGAAATCATAATAGTGGGATTGATTTTTACT
TGAGATTTACAGTATCATAGACCGACGTCACTTTCACCCACGATCAGTCA
TTTTTTCTAAGAAATGCAGAAAGAATATGTACAGGATGATTTAGTAACAC
CTTGCAGAGCTCCTGCAAGGCTTTGAGTGTTCCTATTTCGACCTGCGCAT
AGTTTTGTGTTTGATTTTATTTCCTTGGTGAAAATTATGCTAGTTAGGAA
GAGGCAGCTTGCTTGAGATTTGGTTGAAGATAGTACCTAACTGTTGGATT
TTGTCGAATCAGCCGAAAGATGTCTTTTAGATGCAACTTACATATTTAAC
ATTGTTCTTCTNGCCTAAGTGGATTTTGTCGAATCAGCCGAAAGATGTCT
TTTAGATGCAACTTACATATTTAACATTGTTCTTCTGTTCTTCTTCAGAG
GGATTTCCGAGATTTCCGTCTCTAATTTCAACAAAATTCTACGAAATTAA
TTTGTTGTTTAAGTTCATTTCTGTCTGAGAGAAAAACTTTGTTTTGACCT
GACCATTGAACTTGAAATATTCTTAGCACAAAATATGACAGTTACCCAGT
GAATACCATATCAAGAAGCACACAGCACCGAAAACCGTTAAAATTGTCTA
TAAAAGGATATCATATGCACTTTAACTTTCTTTTTATATCCACCTATTAT
CACAATTCTTTTTGATCTCTCATTTTCAGACAAATGTGACCCTACAACTT
TCCCTGACGGAACAGACGCCAAAATCAAAGATGAAAAACTTTTCTATAAT
AAAGAATGGTAAGGGTCCTGGCGTTCTAAATTTAAGGCCATTCCATTAAA
TTTTATGTTACTTCTAACCAATAGAATGGTTTCTTTTCTTTTCGTTTCGG
AGCGAAACAGAACCGTTACGTTTGAACATGGTCTAAAGCCAAGCAAACCT
GAATTGACGCCAGCATCCGAGGGGCCTATTTTTGAAGTTGCTGCATTGTC
GGGTAAAATTAAGAGAAGAGAGGGAAAAAGTAGAATTCTGCTTTTTATTT
TGGTATGCTGTGCGACAAACAGGAGCTATCAGAGCGGGAAACTTGTAGAT
ATATAACGCCATTGTAAGGGGACAAGTAATTTATATGGACTAATCGTTGT
GCTTCGATTTATAGAAAAATTCTTTTGAATTCCTTTCACGTGGAGATTTC
TAAGAATGGTTTAGAACTTAGTTAACTTGGTTAGTTTCGTTTTTCCATGA
GGCGTTATTTCTACGGTTGATGAAATTTTAATAAACATTTGGACCTGATT
GTCTTATGGGTTGAAAATAGTACCTCGAAATAATGTAAAGGTAGGCTAAA
ATCATAGCGAAATTCAAGAGACTTCTCTTTTAACAGCTGAATCAAATTCG
AAGATTCGGGTGCCTTTAGACCAAGGATTATGTCTCGCGTATCTTGTTCA
AAGTTTCCTTATCAGTCCATTGATAGATGAACAAAGCAAAGCCCATTGAC
AACATTGTATTGCGATAAGAGAGGCGCTAGCCTCTGTACTACGATACCAG
AGCCTTTAGCCACTGCACTACGAGACGAGAATTGCTAGCTGCTTTACTTA
GAATCAATTTAAAATTAGAGCTCTTAAAGGTTTCTCCTTATATTTTTTCA
TCTTTTATCCACTAGGTACCAAAGTGGTGATCCAGTTTATTTGAATAGTC
GTGATGGGGAACGATTTCAGTAAGCATTACTATTTTAAAAACCTAAAATA
TGTTTATATACCCGAGTACACGCTCGATCTAGAAATAGATAGCAGATGCT
TTGCTGCAGGACGTAGCAACCTCTATTCTTGATATTCATGACGTAATCTA
ATATACGGAAACACCCGAAAACACCGGGCGTTTGCCACCAGTTTTGATTT
CAAACAATGAAACTGTTGGCAAACGCCCAATCTTTTTTGGGTGTTTCCGT
ATAAAAGATTACGTCATAGATATCAAGAATTAAAACAAAACGATTTTTAG
CAGATTTCTCAACATTTTGGTCAAAATTTCGTTTTCCTCTCCCTCACTTA
TACTCTACCAGTATACCTTATAGGGAAAAGGATGGGCTTTGAGTTTTTCA
TGTTCAAGGGACAACAAACGTCTTGAAATCATTGGGTTGAAATTCTCACA
GATTGATACCATGTAACTCTCGTGAACTTGAACAAAAAGCCACTTTTTTG
CAGCTTTCATAAACTGATATTTATTCAATACCTAATATTCCATTAGGACT
GCATACTCTTAAAAGCGCATATTACATTTGAATGTTGTTAAACCTCTTAA
ACCTCCTTATAATTTGTTTTTTTAGCGCGCAGATTCATTCAATTACGAGT
ACTCGAGAGGTAAGTATCATTTTTCAATCTTTCCAGACTGTATCAAACTT
TCGTTAGTAATTTCTATAGGAGATTGGTTCGCAGTGTACATGTATGGGAC
CAATTTCCATTACCTCCATAACCGTCGATACTTTTACCGGATTTAATTCC
GCGAAATTTTATGTACTTGTTTTTGCGAATCAGTCGAAAATCAGTTGAAA
ATGGCCCTGACGGGCCAATTTTTCTCATAAAGAGCAAATTTACAGGGTCT
TTTTTAACGGCCGCCCACGCTAAAGCTCTAAAGGAGTGGACCAATTTTCT
ATCGAAGAGAAATCTAAACCTTTCAGATGTTGAAAATTTCCCCGACCTTT
AGAGTTAGCGTGTCAGATGAAGATTTCTACATCTGGGTGTCAGATAAGAA
TTTTATTTTTGCAAAAAAGCTAAAAATTCTCACAAAGAATTAATCCGATC
AAGTTACCACTTGAATAGAATCGTTTAGATTTCTGAAATCTGTTTTCAAT
AACTTCATGTTGTGTCTCTTTTTCAAAACAATTATTTTTTGGGGCCCTGG
GATGAAGTTAGACAATGTCTTCTGTTTTGTCACAGATCTGGATCAAGAAA
CTAACGGAAGGAACACGATTGAAAATTTACGTCGGTCATTTACAACGCGG
TAAATACGCCATCGAACGACGAGAAAAGAAATAACAACATTTTCTCGTTT
TTTTTGTTATTCCCTCCCTTTTTTATGTATATAGCATTTTCTTGAATATA
ATTTATATTTTATTTTGACCCTCTACTCTCGGGTACCTAATAGCCGGGGG
AGTTGGAATAAGCAGGGGGGTTGGAAAAAATCTCAAAATTTAATAAGCGG
GGGGGGGGGGTGGAATAAAAATGTCCTGGGTGGAAAATGTTTGAAAAGGA
GGCTCATACAGCAGAATTAAGACAAAAAAGGGAACTTTCAAAAACATTTC
CCCAAAAATTGATAAGCGGGGGGGTTGGAATAAGAATGTCCTGGGTGGAA
AATTTTCGAAAAATTAA

Coding sequence (CDS) from alignment at scaffold_70:74996..87512-

>TCONS_00072070 ID=TCONS_00072070|Name=TCONS_00072070|organism=Clytia hemisphaerica|type=CDS|length=1443bp|location=Sequence derived from alignment at scaffold_70:74996..87512- (Clytia hemisphaerica)
ATAAACAAAATAATGACACGAGAAGCTGGGGCACAGTCTCCTGTTGACCC
CTCTGTGGATGAACTGAAGACCAAGCGAGGTCGGAAACCTTCGCAAGCAA
AACTTGCCATGTTGGAATCTAAGCGTTTATTTGCCGACAAAAGGAGATTT
CCAGATGATAATGGTGATGGGGGTAACAAGAAATCCAAAAAGAAGAAAAG
CTCAACAAATGATAAAAACAAGAAGAATTCTACCCCTGCAGCATCCACAT
CGACAACAGCATCAGATTTTAAGAACATCAATTTGAAAAAGAAAAAGAAT
GGGAAGGGAAAAAATGGAGAGAGCAGTTTGAAAGGTAAATCAGCCAAAAA
TGACCATGAGAATGACCGTCGCAAGAAGAGAAAAGCTCCATCCCGATATC
GTACTGAATCCACTGATGATGATGCTAATAGCTCAGATGATGAATTCTGG
GACGCAAAGAAATCAGGTGGTCGACATAATGATTATTACGACGATCGGGA
AGATTTCTTCTTCGATTCTGATTCCGACGATGACCTCGATAACGAACTCC
TTCAAAATTCGGATGAAGATACAGAGGACGCAAGTGAAACTGATATGGCC
ACACTGGAAGAAGAAATATCCGAGATGAAAGAACAGATGTATCAACAAAA
GATAAAGGAATTGAAAGGCAAACTGGAAGAGCTTGAAAGAAGGACACTTC
CGGAATTCAAATCCAAATTTGAAGAACTGAAACGCGAGAAAGAAGACTGG
ATCCGAACGGCGTACGCGTACAAGTCGTATGAGGAGCGTGAAATAGACCG
CGAGTATGAACGAGAAAAGAAACAAGCCAAGGAAGATTTTGAGCAAAAGA
AACAAGAACTGAAGGAACACTTAATCGCCGAACTCAACGAAAAGAAGAGA
TTGATAGAAAACGAAAAGACCACCCTGGAATTGAGCGGTGGTATCGGCCC
CATACTTCCTCTTGAAGTCAAGCCGACTGTCACACGGAAATTACGACGCC
GGGGGCCAGAACCACTTCCGGTGGCCGAGAAGAAACGCAAGACGAATTCG
ACGCCGTTGAACCTTCTGTTGAACGAAGAACAAATACTGGCAGACTTGAA
GAAGATTGGAAAACACCACAAACCTCATAGTAGTAGTACGAGTGAAGAGA
AAACACCGAAACCAAGCAAAAATGCAGACAAATGTGACCCTACAACTTTC
CCTGACGGAACAGACGCCAAAATCAAAGATGAAAAACTTTTCTATAATAA
AGAATGGTACCAAAGTGGTGATCCAGTTTATTTGAATAGTCGTGATGGGG
AACGATTTCACGCGCAGATTCATTCAATTACGAGTACTCGAGAGATCTGG
ATCAAGAAACTAACGGAAGGAACACGATTGAAAATTTACGTCGGTCATTT
ACAACGCGGTAAATACGCCATCGAACGACGAGAAAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044762XLOC_044762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072070-exon-scaffold_70-1575043694:87205..87512TCONS_00072070-exon-scaffold_70-1575043694:87205..87512Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:86626..86679TCONS_00072070-exon-scaffold_70-1575043694:86626..86679Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:85430..85535TCONS_00072070-exon-scaffold_70-1575043694:85430..85535Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:83210..83311TCONS_00072070-exon-scaffold_70-1575043694:83210..83311Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:82307..82373TCONS_00072070-exon-scaffold_70-1575043694:82307..82373Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:81087..81142TCONS_00072070-exon-scaffold_70-1575043694:81087..81142Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:80393..80484TCONS_00072070-exon-scaffold_70-1575043694:80393..80484Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:79178..79237TCONS_00072070-exon-scaffold_70-1575043694:79178..79237Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:78749..79082TCONS_00072070-exon-scaffold_70-1575043694:78749..79082Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:77555..77633TCONS_00072070-exon-scaffold_70-1575043694:77555..77633Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:76644..76697TCONS_00072070-exon-scaffold_70-1575043694:76644..76697Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:76004..76037TCONS_00072070-exon-scaffold_70-1575043694:76004..76037Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1575043694:74996..75427TCONS_00072070-exon-scaffold_70-1575043694:74996..75427Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:87205..87512TCONS_00072070-exon-scaffold_70-1510915933:87205..87512Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:86626..86679TCONS_00072070-exon-scaffold_70-1510915933:86626..86679Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:85430..85535TCONS_00072070-exon-scaffold_70-1510915933:85430..85535Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:83210..83311TCONS_00072070-exon-scaffold_70-1510915933:83210..83311Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:82307..82373TCONS_00072070-exon-scaffold_70-1510915933:82307..82373Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:81087..81142TCONS_00072070-exon-scaffold_70-1510915933:81087..81142Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:80393..80484TCONS_00072070-exon-scaffold_70-1510915933:80393..80484Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:79178..79237TCONS_00072070-exon-scaffold_70-1510915933:79178..79237Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:78749..79082TCONS_00072070-exon-scaffold_70-1510915933:78749..79082Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:77555..77633TCONS_00072070-exon-scaffold_70-1510915933:77555..77633Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:76644..76697TCONS_00072070-exon-scaffold_70-1510915933:76644..76697Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:76004..76037TCONS_00072070-exon-scaffold_70-1510915933:76004..76037Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1510915933:74996..75427TCONS_00072070-exon-scaffold_70-1510915933:74996..75427Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:87205..87512TCONS_00072070-exon-scaffold_70-1491911889:87205..87512Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:86626..86679TCONS_00072070-exon-scaffold_70-1491911889:86626..86679Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:85430..85535TCONS_00072070-exon-scaffold_70-1491911889:85430..85535Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:83210..83311TCONS_00072070-exon-scaffold_70-1491911889:83210..83311Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:82307..82373TCONS_00072070-exon-scaffold_70-1491911889:82307..82373Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:81087..81142TCONS_00072070-exon-scaffold_70-1491911889:81087..81142Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:80393..80484TCONS_00072070-exon-scaffold_70-1491911889:80393..80484Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:79178..79237TCONS_00072070-exon-scaffold_70-1491911889:79178..79237Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:78749..79082TCONS_00072070-exon-scaffold_70-1491911889:78749..79082Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:77555..77633TCONS_00072070-exon-scaffold_70-1491911889:77555..77633Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:76644..76697TCONS_00072070-exon-scaffold_70-1491911889:76644..76697Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:76004..76037TCONS_00072070-exon-scaffold_70-1491911889:76004..76037Clytia hemisphaericaexon
TCONS_00072070-exon-scaffold_70-1491911889:74996..75427TCONS_00072070-exon-scaffold_70-1491911889:74996..75427Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072070-proteinTCONS_00072070-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:74996..87512 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.7729	40.4854	24.0944	19.4962	55.2394	47.5644	42.5205	47.2348	35.4774	29.7046	25.9696	22.9548	14.2992	19.8033	17.157	16.6538	24.2986	24.1567	11.1552	15.9174	14.54	13.1336	45.0496	39.017	26.8059	22.5873	17.3725	10.0622	28.6221	32.0907
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013907Sds3
Blast
[Close]
BLAST of TCONS_00072070 vs. Swiss-Prot (Human)
Match: SDS3 (Sin3 histone deacetylase corepressor complex component SDS3 OS=Homo sapiens GN=SUDS3 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 8.197e-52
Identity = 117/278 (42.09%), Postives = 177/278 (63.67%), Query Frame = 3 
Query:  609 EEEISEMKEQMYQQXXXXXXXXXXXXXRRTLPEFKSKFEELKREKEDWIRTAYAYKSXXXXXXXXXXXXXKKQAKEDFEQKKQELKEHLIAELNEKKRLIENEKTTLELSGGIGPILPLEVKPTVTRKLRRRGPEPLPVAEKKRKTNSTPLNLLLNEEQILADLKKIGKHHKPH--SSSTSEEKTPKPSKNADKCDPTTFP-DGTDAKIKDEKLFYNKEWYQSGDPVYLNSRDGERFHAQIHSITSTREIWIKKLTEGTRLKIYVGHLQRGKYAIERR 1433
            EE+  EMKEQMYQ K+  LK +L++L+  TL E++ + ++L ++ ++ IR A  +   E  +++R Y +EKK A ++FE KK ELKE+LIAEL EKK++IENEK T+EL+G       +EVKP +TRKLRRR  +P+P+ +K+RK     LN LL +EQI+ DL+ + K   P   +S +S E  P          P   P    +A+I+D KL+Y+K WY     +YL S+D ++    I S+ +  EIW++K ++ T+++IY+G LQRG + I RR
Sbjct:   62 EEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGD-----SMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLP--------ATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGAN-EIWVRKTSDSTKMRIYLGQLQRGLFVIRRR 325
The following BLAST results are available for this feature:
BLAST of TCONS_00072070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDS38.197e-5242.09Sin3 histone deacetylase corepressor complex compo... [more]
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