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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072305 ID=TCONS_00072305|Name=TCONS_00072305|organism=Clytia hemisphaerica|type=transcript|length=1625bp
AAATAATCGCAATAAAGCACGGTTGAAGAACACTATGAACATGCAAAGCA
TCGAGGCGGAAGCATTTTCACTTTTCGAACTGGCCAAAGCTTTGCTTACG
CAGTACCGTAACAATGCTATGCCGTACTTTTCCGTCGACGTAGATGAAGT
GGTCACGAATACAAACGTAAACCGCAGATTGCAACTGGCTGCTTTCGAAA
TAGGAATCTTCGCTTTGAACATCCACAATTACAGTTCGCCCAATTGGTTT
TCTCGAACGTACTCTAGCTACGTTTCATGGATTGAAACTCTCGCCATTGA
GATCGGCACATCCGCCATTCGCATGTTAAACGAAAAATGGGAAGGCGTTC
TCACACCCTCAGAAGCTATCCAAATTGCTGGGCGTGTCTCGCGGGGAGGA
GATCAAGTTCTGCGGCGAACGGCTGTTGAGTTATCGTTGTCGTGTTTGCC
ATATTGTCAAAGTTTGAATTCTGTCGAAGTCACACAAACAATGTCCATGT
GTCGCGAACAAGATCACGAACTTCTCGAGCGCGCGTGTTCCACTCTGGAG
AATGCTAGTCGTCAGGGAGGCGTTCAACCCGAACTACTTTTCAGCGTCGC
TCGAGAGTGGCATTACTTACACGAAGAAAAACGGAAACGCGAATCGGCGG
AAACACCATCAGATCAAAACACGCCACGATCGCCTTCAAGAAGCGGGCGG
CACAACGCCCGTCCACAGCAAGGCAATGCAGCAAATTTCGTTCCGATGTA
TTTAACGCCAGAACAGTTTGTTCAAGAGCAGATTCATCAACAAGCTCAAG
AAATCTTCGGACGTCAGTTACCGAGAAACACCCCTCAAGAGCAGGGCGTT
TGGGCGTACCACCCTTCATATTTCAACCAGCTTCACCATATACCACTTCC
ACAACAGATGATGCACTCTCGGAGAATCTCCAACATTGACACATACGCTC
TCCCCGTCAACAATTTTCCCGACGAAACAAACTTCGCCGAGATCCCACGA
TATTTACAGAATTCCTACCGTGTCGGGATGCTCGCGTTGAAAGCACTCGC
GCTACGTATGCCTGATGATCGACCGGAAACTCGGTTTGCCGTGGCACCAC
CATGTTCGGATGATTTTCGCTGGTTATGTGCTCTAGCTGCATCTCTTGGT
CCGAcgtatttgaaaaacttttgcaAAGTTGTGTACGACGCTGTTACAAG
TCCCTTCTTGCTTCACGATCTAGCGCTGGAAGCGGCAAGAAATTTTGCTC
TTTATAATCCCGCACATTTGACGTCACACTTAAGGTCGCCAAGTGTTAGT
CCGATCGTGCAAAAAGCGCTCGTTATGTTCAATGAAAAAGTGCATTACGA
TTTAGTGCTTTTGCAACCAAACAAATATAATGATTTCGTGGAACTATTGC
GACGTACCCGATCAGCTTTTTGTATGGCACCGGGCGGCATGCAACGTTTT
AATGATATCCTGGAAATGATTCGTAAGACATACCCTAAGAAAGGTGAATT
ATGGCAGAAAATTATGAATGGACTTTCGACTGCTGCATAAGAAAAGGGAC
TATATTATTGGTATGACCAAAATAGTAATGTTTATCaaatgtacgaacat
tttctggaagagcccgaTGTTTATC Run BLAST on NCBI transcript from alignment at scaffold_76:47812..55351+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072305 ID=TCONS_00072305|Name=TCONS_00072305|organism=Clytia hemisphaerica|type=transcript|length=7540bp|location=Sequence derived from alignment at scaffold_76:47812..55351+ (Clytia hemisphaerica)
AAATAATCGCAATAAAGCACGGTTGAAGGTAATACCACAGATCTTCAACT
AATTGGCTGGATTGGGTTTCCGTTCCCGATGACAAGTTTATTCTAGAGTT
TTTCAATCATTGGAAATAACTTGACtttaaaaaacactaaaaaaccTCTA
TGAATCCGCTATATAGAggttttttagtgttttttgaAATCAAGTTATTT
CCaccattcatgatattcatgacgtaatgttttctacgaaaATACctcgg
tttttgccagtagtggcaaatttaaactagacaaaagttgtataaaagtt
gccactactggctaaaaccggggtatttccgtagaaaacattacgtcatg
aacatcatAAATTATGGTGATGGAAGCAAACTTTCGATTTGCTTAATAGG
CacctctacagattcgaacgtttgtttttataatggcggaaattaggTAA
CTAAGAAGCAAAACATGGAAAACCTTTATTGTATTCTACTTTGTTATACT
CGACGCGATTCAAATGATTTGAAATTGAAACGTTCAAAAATTTAacgtaa
aataaaaaacatcatGGCGGATCAGTCGGGTCAACATGGCGGACCAATCG
GGTCAAAAACTGTGCATGCTTATGTTTCACGGGGCAACATCAAGCGATTA
GCAGTCAAGATTAGTGTATAAGAAACAGGCTATTTTCCCGGCAACTTGGT
GACGCCATCTGGTAGAAGGTCGGGAATATATTCTAAACTAAATGTGATGG
GGTTTACAAAAAGAACATTCAGACGAAAATTGAGATAAAAagattactct
taggttccaaataaacgtggaggggggggttggaaaattctcgagatttt
aataaacaggggggacCTATTTGCctggggggttggaaattgtacttctg
aaaacccaaaaataaggtaaatataggatAAAATCAAGCTATTTATAATG
AaggtttttttttggttttttttttataacattatCATGAAACTTCTCAG
AAACTGCATGAACATCAATAAAATAACATTTCACAAAAGCGCCATATTCT
TAAGTTCCAAATATACGcccccccctgcttgttaattttttgaaaatttt
ccaacccccctctcagaagtacaatttccaaccccggggggggggcgttt
attaaaatatcgaaaattttcaatctcCAACCCCCTcctttatttggaac
ctaagagtatttgtttacattttttttcttgccATAGAACACTATGAACA
TGCAAAGCATCGAGGCGGAAGCATTTTCACTTTTCGAACTGGCCAAAGCT
TTGCTTACGCAGTACCGTAACAATGCTATGCCGTACTTTTCCGTCGACGT
AGATGAAGTGGTCACGAATACAAACGTAAACCGCAGATTGCAACTGGCTG
CTTTCGAAATAGGTATGTAAATAGATGGATAgatgagtgaaggtagagag
tctatcaccatatttccgtAACACCCTGCCTGGTAGTGCTtcggattcga
acacagtccattgcggtgcaagtctgtgatcgaaaccttcgcactaccaa
tcggcagaatgttagtgagacacagtgatagccttatccagatggtgagt
gaatgtattaccgagtttatcgttctacatctgcaatttgagctttacta
agctcaggatagatagagtcgatatttaacGTATTTAGACAGTCTCTCCA
ATGTTTTCCGGTGGTCCACGGTAACCCGGTTTGGCTATCTAAGGAACGGT
ACGGAACATTAAAGAACCGATGGTTTTAGCCGAAAACCCCTGGTTTAAGG
AGCTGACGCTTACAGAATAAACAGAACTTTTTAACGTAAATTTTCAAGAC
ATGGAAATACAagaatatatatataaaaatttccGAAACAGTAATCCTAT
TGGAGAGTTCTTTGTGTGATGACGTCGTCGgatatgaaaagaaaaattta
acaatAAATTCCTCTTTTGTCACAAAATTTCTcataaaataccaaaatca
tACGATgtcttcaaaaactttttgaaaaattgaaaattgtaaaaaacaTA
TAACCATCGATCTTTACTATTTAACCGGATTAACTCTCGCAACATTGACA
ATTTTCACGAGCCAGAGAAATCGCGAAATTGTTTTAAAGTATCAGATGTG
CGTCTGTCGTCAGCAAAGTCTGTATCTGTTAAATGAACGGCAGGNNNNNN
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NNNNNAAAGAGAGAAGAATGATCGAGAAAAGCAGGGGCTTGACCGGTAAT
CAAAGGCCTATCCCTGTTAGGGACTACCAATTGATCCCGGACCCTGGAGC
TGTATGAGAAATTCATTGTCTTTTCAAATTGCTAATATAGTATGTGTTGC
GCAACGACTACATACGCATTTTCCCATAGGTGGGGCAGTTCTCAACTAAC
TTGAGAGTTTTCTCCGTAACCAAAGTGGTTAGGCAGAAGAGGATCAAAAA
CCATATCAACTATCTGTTGTTAACTGCCTAATGATCCCTATCGCTCTACC
TGCTATAGAACGAGATTTTTTTTAGGCTGGTATACTCCAGCTGCTGTTAT
ATCAGAGTTTTCCTTCTCCTATTTGAATTACCTTACTGGGCTATAAGATG
CTCCAACTACACCTAATTCTCCGAAGAGtatggaatgaaaataaaataaa
attgtgatTAGAATATGATACATCATTACTTGACATTCTCGGATATATAC
AGATAAAAAAAGAAGGTTTATATACAGGTTAAAAAGAACATGTGCACTAG
CTTTGCTTGCTATCCAGCTACCGATTTTCAACActaaagtgattaacatc
gtcaTTCGCTGTAAATTCAAGACGATCAAAAACTATATAACATACAGCGA
TTAttaacactgaagtgattatcATCGTTACAGCCGTAGAAAGATGGATG
TATAATTTAGGATATCAATGAAAAGAGCGAAGAGCGGATGTCAAAAACAG
CAGTGGAAGAAATGGTGAAACTGAACTGTCAAGTAAAGCTAACTCGTTGG
CTTTGCAGGGCAAGGGCGCCAGGCTTCGAGTGAAACCATCCTTGAGGAGG
ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcccccccccccgggtttgacgtcaaa
aagacaatttcGATCATTTGCTTTGTTTTGCGTGTGGTTTTGCCTaaaat
ttctcttctttttcaCAGGAATCTTCGCTTTGAACATCCACAATTACAGT
TCGCCCAATTGGTTTTCTCGAACGTACTCTAGCTACGTTTCATGGATTGA
AACTCTCGCCATTGAGATCGGCACATCCGCCATTCGCATGTTAAACGAAA
AATGGGAAGGCGTTCTCACACCCTCAGAAGCTATCCAAATTGCTGGGCGT
GTCTCGCGGGGAGGAGATCAAGTTCTGCGGCGAACGGCTGTTGAGTTATC
GTTGTCGTGTTTGCCATATTGTCAAAGTTTGAATTCTGTCGAAGTCACAC
AAACAATGTCCATGTGTCGCGAACAAGATCACGAACTTCTCGAGCGCGCG
TGTTCCACTCTGGAGAATGCTAGTCGTCAGGGAGGCGTTCAACCCGAACT
ACTTTTCAGCGTCGCTCGAGAGTGGCATTACTTACACGAAGAAAAACGGA
AACGCGAATCGGCGGAAACACCATCAGATCAAAACACGCCACGATCGCCT
TCAAGAAGCGGGCGGCACAACGCCCGTCCACAGCAAGGCAATGCAGCAAA
TTTCGTTCCGATGTATTTAACGCCAGAACAGTTTGTTCAAGAGCAGATTC
ATCAACAAGCTCAAGAAATCTTCGGACGTCAGTTACCGAGAAACACCCCT
CAAGAGCAGGGCGTTTGGGCGTACCACCCTTCATATTTCAACCAGCTTCA
CCATATACCACTTCCACAACAGATGATGCACTCTCGGAGAATCTCCAACA
TTGACACATACGCTCTCCCCGTCAACAATTTTCCCGACGAAACAAACTTC
GCCGAGATCCCACGATATTTACAGAATTCCTACCGTGTCGGGATGCTCGC
GTTGAAAGCACTCGCGCTACGTATGCCTGATGATCGACCGGAAACTCGGT
TTGCCGTGGCACCACCATGTTCGGATGATTTTCGCTGGTTATGTGCTCTA
GCTGCATCTCTTGGTCCGAcgtatttgaaaaacttttgcaAAGTTGTGTA
CGACGCTGTTACAAGTCCCTTCTTGCTTCACGATCTAGCGCTGGAAGCGG
CAAGAAATTTTGCTCTTTATAATCCCGCACATTTGACGTCACACTTAAGG
TCGCCAAGTGTTAGTCCGATCGTGCAAAAAGCGCTCGTTATGTTCAATGA
AAAAGTGCATTACGATTTAGTGCTTTTGCAACCAAACAAATATAATGATT
TCGTGGAACTATTGCGACGTACCCGATCAGCTTTTTGTATGGCACCGGGC
GGCATGCAACGTTTTAATGATATCCTGGAAATGATTCGTAAGACATACCC
TAAGAAAGGTGAATTATGGCAGAAAATTATGAATGGACTTTCGACTGCTG
CATAAGAAAAGGGACTATATTATTGGTATGACCAAAATAGTAATGTTTAT
CaaatgtacgaacattttctggaagagcccgaTGTTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072305-exon-scaffold_76-1491911889:47812..47839 | TCONS_00072305-exon-scaffold_76-1491911889:47812..47839 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1510915933:47812..47839 | TCONS_00072305-exon-scaffold_76-1510915933:47812..47839 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1575043694:47812..47839 | TCONS_00072305-exon-scaffold_76-1575043694:47812..47839 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1491911889:49049..49223 | TCONS_00072305-exon-scaffold_76-1491911889:49049..49223 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1510915933:49049..49223 | TCONS_00072305-exon-scaffold_76-1510915933:49049..49223 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1575043694:49049..49223 | TCONS_00072305-exon-scaffold_76-1575043694:49049..49223 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1491911889:53930..55351 | TCONS_00072305-exon-scaffold_76-1491911889:53930..55351 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1510915933:53930..55351 | TCONS_00072305-exon-scaffold_76-1510915933:53930..55351 | Clytia hemisphaerica | exon |
| TCONS_00072305-exon-scaffold_76-1575043694:53930..55351 | TCONS_00072305-exon-scaffold_76-1575043694:53930..55351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:47812..55351 + |
Blast
BLAST of TCONS_00072305 vs. Swiss-Prot (Human)
Match: ZSWM8 (Zinc finger SWIM domain-containing protein 8 OS=Homo sapiens GN=ZSWIM8 PE=1 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.336e-48 Identity = 94/223 (42.15%), Postives = 132/223 (59.19%), Query Frame = 2
Query: 44 QSIEAEAFSLFELAKALLTQYRNNAMPYFSXXXXXXXXXXXXXRRLQLAAFEIGIFALNIHNYSSPNWFSRTYSSYVSWIETLAIEIGTSAIRMLNEKWEGVLTPSEAIQIAGRVSRGGDQVLRRTAVELSLSCLPYCQSLNSVEVTQTMSMCREQDHELLERACSTLENASRQGGVQPELLFSVAREWHYLHEEKRKRESAETPSDQNTPRSPSRSGRHNAR 712
Q EA A FELAK +L + N+ + +R L L AFEIG++AL +HN+ SPNW SRTYSS+VSWI A+EIG++A+ +L E W+G LTP E +A R SR D + R A EL+LSCLP+ +LN E+ + + C+EQD+ +LE+AC +E A++ GGV PE+LF VA +W +L+E+ S + S R+G R
Sbjct: 1232 QPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSASGIRAGGEAGR 1454 HSP 2 Score: 142.51 bits (358), Expect = 2.034e-35 Identity = 71/177 (40.11%), Postives = 109/177 (61.58%), Query Frame = 2
Query: 1001 YLQNSYRVGMLALKALALRMPDDRPETRFAVAPPCSDDFRWLCALAASLGPTYLKNFCKVVYDAVTSPFLLHDLALEAARNFALYNPAHLTSHLRSPSVSPIVQKALVMFNEKVHYDLVLLQPNKYNDFVELLRRTRSAFCMAPGGMQRFNDILEMIRKTYPKKGELWQKIMNGLST 1531
+L +YRVGMLAL+ L R +D P F+ +PP +DD +WL LAA LG Y+ FC V SPF+L ++ +E + +PAH +HLR+P+ +VQ+ + + +H+ L+ L P Y+DFV +R RSAFC+ P GM +FNDIL+ ++++ K ELWQ++ ++T
Sbjct: 1663 HLHAAYRVGMLALEMLGRRAHNDHP-NNFSRSPPYTDDVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIVMETLQRL---SPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRSKQTK-ELWQRVSLEMAT 1834
The following BLAST results are available for this feature:
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