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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072705 ID=TCONS_00072705|Name=TCONS_00072705|organism=Clytia hemisphaerica|type=transcript|length=2473bpRun BLAST on NCBI protein sequence of TCONS_00072705-protein >TCONS_00072705-protein ID=TCONS_00072705-protein|Name=TCONS_00072705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp QGKRQQAVGNQIHSKNKFKRKMRRSAFSVFKEVASKSPAKSSAESTDDDQRun BLAST on NCBI transcript from alignment at scaffold_82:468444..487273+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072705 ID=TCONS_00072705|Name=TCONS_00072705|organism=Clytia hemisphaerica|type=transcript|length=18830bp|location=Sequence derived from alignment at scaffold_82:468444..487273+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_82:468444..487273+ >TCONS_00072705 ID=TCONS_00072705|Name=TCONS_00072705|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_82:468444..487273+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072705 vs. Swiss-Prot (Human)
Match: RIOX1 (Ribosomal oxygenase 1 OS=Homo sapiens GN=RIOX1 PE=1 SV=2) HSP 1 Score: 421.009 bits (1081), Expect = 1.511e-135 Identity = 201/434 (46.31%), Postives = 285/434 (65.67%), Query Frame = 2
Query: 728 ADHLFAWVIAPVKTEQFFSDVWQRKPLFIKRRQSNYNKVWFSTKEFDNILKKQNVQFTKNLDIAVFRNGQRETLNPDGRAFAPMVWRFYKEGCSIRMLNPATFSSNVWHLCSKLQEYFGCLVGANVYLTPPASQGFAPHYDDIEAFVVQLEGKKRWRLYSPRDINETLARHSSQNLSPDELGEPILDRVLEAGDSLYFPRGMIHQAITQDDSHSLHLTLSVHQKCCWSDYMEKLVPLALQAAIEEDIDFRKALPIGFQNHIGMANSEKKSEERKSFMKTAEQLMKKLVSFVSIDEAGDELALDQMEEYLPPSLSEDEKQRSVSGTGAFWDNND-IKMKSKITLKSRVRLLRPGIVRLIPEDENLQIHHTVGNSRQYKELPLSATQVPLQYADIVEYFLLSYPEYVHVKDAPIDDDEIKLELAEKLYDLGLLMTE 2026
A LF W+IAP+ + F+ +W+R+ + ++R+ Y + FST + D++L+ + VQF ++LD A + NG+RETLNP GRA W Y+ GCS+R+L P FS+ VW + LQE FG + G+NVYLTPP SQGFAPHYDDIEAFV+QLEG+K WR+Y PR E LA SS N S D+LGEP+L VLE GD LYFPRG IHQA QD HSLHLTLS +Q+ W D++E ++PLA+QAA+EE+++FR+ LP F +++G +S+ K R +FM+ L+ +L F +D D+ A D + + LPP L++ E+ SV G W+ + + + +++T ++ V +L+ GI RL+ E +L +++TV NSR Y ++ Q AD +E L SYPE+V V D P D E +L LA LYD GLL+T+
Sbjct: 202 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLGSYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTK 635 The following BLAST results are available for this feature:
BLAST of TCONS_00072705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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