TCONS_00072936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072936
Unique NameTCONS_00072936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072936 ID=TCONS_00072936|Name=TCONS_00072936|organism=Clytia hemisphaerica|type=transcript|length=2215bp
AGATTTTATGAGACACATAATAATTTGATAACAAATATTTGATTATTTga
aataatataatattataATAATGGATGATTTGATGTATCTGGAACGCCTA
AAAGCAGGTCAACAAAAGtttctcGAAGATAACTTGCAAAGGCAAGGAAT
AAGGAAAAATCTTGTGGAAGATTACAGCAAGCTAATTAAAAGATTGAAAA
CACTTCCTGATACTACAACGCAGTCTACTATGGTGCCAGTTGGAGACATT
GCATTTTTACCCGGAAATATTGTCCACACCAACGAAATTATGGTGTTACT
CGGTGACAACTGGTTTGTAGAGCGATCAGCCAAACAAGCATCAGAAATTG
CTGACAGAAGACTTAAAATGGTTGAAAAACAGTTGGATGATTTGGTGAAA
GAACATGAGCACATCAAAAGCAACTTGACGTATGCTGATCAATTCTCAAT
GGACAATGAAACAAAGGAGATCAAAGAGACAGTACCGGAAGATTACCAAT
CTACTAAAGGGAAACGAAAGATTGCTCACAAGGCAAAACACAACGTTGTT
CCAAGAGCAGTGTCCTTTAAAAACACCGACGCGGCAATCAAAAGCCTCGG
GAAAGATTTGATGACGAAAAAAGATTCGGTGACCGGACAATCATCGACCG
ACCAAACAATCGATCACGAAGAATTAATGTCTCGTTTAAACGAACTTGAA
CGAGAAGAACAGGAAGCCGAGCAACGGGAACACGACAAAATCATGGAAAG
TATAATGGAAGGCTCGTATGTACCACCGAACGCAACCGACGATAATCCTC
GTAAATCCTCGGTAACAAACGGCGCTAAAAGACAACCTCGAAGACACGTA
AAATTTCATAATCTGGAGAACGAGCCCTTGTCGAGTGAAGACGAAGAAGA
GAGGTTGATTCGTTTCGACCATACCAACCTACCACcaCTGGAAAGATCAT
TGAGTGATTCGGACCTCGCAAAAGAAAGCACTATCAAAACACCAGCTGAT
ATTTACGAACAGTTCTACTGTGGAAGTGCTCACCTCTCCGACTCTGACGA
CTCCAAACCACTCAAATCAATCCTGAAGAAAGATAGTCGATCGGGCTCCT
CTGAGAATCTACGCTTAAAACCGATTTTGAAATCGTCTCCAGAACACAGG
CCTGGAACACCTGATAATCTCCAAGACGAGCCTCAGTCCATTCTCAAAAC
ACCTCCCGATACTCAGGCTAGTGACAAACGGCCAGGCACTCCGGAACACG
TCTTGGACGGGCCGTCTCCGACCCCTCAATCAATCTTAAAACCAGGAGGA
TTTACTAAAGAAGAAATCCCAATGGTCGAAGATATAGATCCATCTGACTC
CTCCGAAATCAGACCTATCCTCAAAAGCCACGAGACACCGCTATTCATTC
CACCCACGGCCACTATTCCGACCTACGGTGATGATAGTCAGCCGCCTTCA
AGACCTTCGATCCTGAAACATTCCACAAATGCTGATAATAGTAATCCGAA
CACGAGATCTTTCAGCCCTGAAGCAGCAATGGCTGGAGATTCAAACAGTA
TTTGGAGAAACGATTCGAATTCACCAGCTCGTTCTGCTCGAATTGTGTCA
CAAGAACCTCAACATCCCAATACTTCTGCCAATGAGTCGTTTGGCGAACC
AAGGCCTATCCTAAAGGCTCAGCCACAGCACAACCCACAAAGTAAAATGG
CTTTCTCTGGTACCATTGTTGAAAGAGACACTGCTGAAGCAACTTCTACA
ACGTCCCGACAAAATAAACCTTCCAGTAACAAACCAATGTCGAAATTCAA
AGCCTCAAGAATGAAGAAATGAGCTCAAAAAAGTTGATAGCGATCGTACA
CGAATGTGTAGAGGGGAAGAGACAAATGAAATTCTGCTTTCTTGTCTATC
GCAACATTAAAGTCCCAAAAATTTGAGTACTGGGTTTAATTCCAAACAAT
GATGTTGTCAAAAATGCATTTCTGTGGTTGAATGTATGATTTTTGTTCAT
TTGGAGTTGGAAAAAAGACTACTTTTTCATTCAAGCTTTAACGCTGGCTT
TTTGCCCCttatttttttacataaatTTTTACGCAGATTTATACCCAAAA
CTTATcaagatttgtaaaaaaatattatcatttACAGCAGTGTTAATAAA
AACTGAAAgctcttttgttaaaaaaggaTTCTGGGTTCAATAAAGGGCAT
TTTTTGACCTACCCC
Run BLAST on NCBI

protein sequence of TCONS_00072936-protein

>TCONS_00072936-protein ID=TCONS_00072936-protein|Name=TCONS_00072936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
MDDLMYLERLKAGQQKFLEDNLQRQGIRKNLVEDYSKLIKRLKTLPDTTT
QSTMVPVGDIAFLPGNIVHTNEIMVLLGDNWFVERSAKQASEIADRRLKM
VEKQLDDLVKEHEHIKSNLTYADQFSMDNETKEIKETVPEDYQSTKGKRK
IAHKAKHNVVPRAVSFKNTDAAIKSLGKDLMTKKDSVTGQSSTDQTIDHE
ELMSRLNELEREEQEAEQREHDKIMESIMEGSYVPPNATDDNPRKSSVTN
GAKRQPRRHVKFHNLENEPLSSEDEEERLIRFDHTNLPPLERSLSDSDLA
KESTIKTPADIYEQFYCGSAHLSDSDDSKPLKSILKKDSRSGSSENLRLK
PILKSSPEHRPGTPDNLQDEPQSILKTPPDTQASDKRPGTPEHVLDGPSP
TPQSILKPGGFTKEEIPMVEDIDPSDSSEIRPILKSHETPLFIPPTATIP
TYGDDSQPPSRPSILKHSTNADNSNPNTRSFSPEAAMAGDSNSIWRNDSN
SPARSARIVSQEPQHPNTSANESFGEPRPILKAQPQHNPQSKMAFSGTIV
ERDTAEATSTTSRQNKPSSNKPMSKFKASRMKK
Run BLAST on NCBI

transcript from alignment at scaffold_86:1043605..1053205+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072936 ID=TCONS_00072936|Name=TCONS_00072936|organism=Clytia hemisphaerica|type=transcript|length=9601bp|location=Sequence derived from alignment at scaffold_86:1043605..1053205+ (Clytia hemisphaerica)
AGATTTTATGAGACACATAATAATTTGATAACAAATATTTGATTATTTga
aataatataatattataATAATGGATGATTTGATGTATCTGGAACGCCTA
AAAGCAGGTCAACAAAAGGTAAGGCTGTTTTCAATTTAAATTCTTATTGT
AGAATTCCATTAATACTCATTTGAAACCTCTCGTAACGACTTCAGTTAAT
GCTGATATCACTTTCTTTCTTATCTGAACAGATTTtctccccccccccta
gtaATCAATACTAAAAGGTCGACATAATGATCAGTTTCCCAAAAAATTGA
TATCATTTAGGTAGATGGATTTTAAAAAGTAAAGTTTAACTATTTTCCTg
agtttctacaaaaccttgaaaacctttaaTCATAACATTTCTGAGAAAAA
ACTTGCAAGTCATTTAATAAACCTTGAAAAgcatgatttttaaattttat
atattttattataGTTTTGGCTTATCTGAGGCTTTGAAATGTCTTTTTGT
TTTATCTGAGGTTACGATTGCATGGATTCAATTTTGGACTTTTCGTACCT
CCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtgtattttgaccagttatgtcttatgtgtttcat
tgtttcaatgttcactgattagtttgataaccaggtaggtccataaaagt
atcgcttgtttctGTTACATTGCTAAAAAGAACCTTTAAAAATCCACTAG
GATTTTATTTggttaaaaacattgaaaacgtTTTAAGGGTCGTAGTCTTA
AGGGTAGGGACTATATTTGCCTGATAGATTTTAGTAGCTGATTGTAGCTG
TATGCTATGATTATAGCATTTAGAGTGTTTTAATTAGAGACTGAATCCTT
GAGTGTTTGGGGAGCCCCTtctttctaaataaattttagtTGGTGGACTA
GTTGAcaattaattatttttattttagtttctcGAAGATAACTTGCAAAG
GCAAGGAATAAGGTAACAAAAACTGTTCTCtacatttttttcattggaCA
GCATTTTTTTGAATGGTTTTATATAGTCATATATGGTATTACAGgctttt
ttacaagaatatgGTGTGTTTTTCCACTTCATCATTATCATGATAATCTC
AAcattttaaagataattttCCAACGTTGGAAAACACATGGAATTTAGAG
TATATAATATGTagacaaagtaaaaaaaattaatgtctgattagtccaaa
tattttgttgtgtaaagtttttcaattctttcaaGTTACTCACAGCAAGC
tactcttttgaaaatgtaTAACATTGGGGAATTTCTTACAATTTTATAGG
AAAAATCTTGTGGAAGATTACAGCAAGCTAATTAAAAGATTGAAAACACT
TCCTGATACTACAACGCAGTCTACTATGGTTGgttaaaaatgtctttttt
tttctttttcacatttttctaaaaaaaaagtcatttgaaGGAGTCTGTAC
TCCTGGAAAGAAGTGGTCTATAATGCATAAACTCCCATATTATGTCTTCT
TCGATGAGTTGTATAAAAAAGAGCACATTAAAATTGACTGACCTTGTCGT
TATATATGAAATACTTACTACTTGAATACTTTTTCAGAATATCATTAAAA
TATTCATTGctgatattttgttttgttcaaaCTTTCAGGTGCCAGTTGGA
GACATTGCATTTTTACCCGGAAATATTGTCCACACCAACGAAATTATGGT
GTTACTCGGTGACAACTGGTTTGTAGAGCGATCAGCCAAACAAGCATCAG
AAATTGCTGACAGAAGACTTAAAAGTAAGAAATGTTTTATTAAACTGTTT
TGTTTGTGTCTTCTCGCTAGCGATtttaaatacaaataaaaaatagttCA
TTTGACGTTCATTGAACGTTCAATAATTGCCTGGAGCCTTCCAGAATATT
TCCTTCTTTTTTCAAGAGATTGGTCCCCAAAAAGAACTACATTGCCAttg
gtattcatgatatgcaccattgcaatgtcttcaacggacctaaaagctga
ttggttttacgtcacttatacaaccaatcagctattgggtccNNNNNNNN
NNNNNNNNNNTGGAATTTTAccgattttcagtatttccctaaatctatgc
tttagatttaagcatcccctcaagcatttttcagccttattaagctttcg
atcTAAGCAtttctgagcctgttttcggatttttgtatgcttataaaaaa
aaaaacatgtattttcaGTGGTTGAAAAACAGTTGGATGATTTGGTGAAA
GAACATGAGCACATCAAAAGCAACTTGACGTATGCTGATCAATTCTCAAT
GGTATGCCTTTGCATTACATATCTTTCTTTGCGTTCTGTTTATATAACAT
AACCTGTTGGCTCTggattaaaaactgtttttaaaCTTTCTAGATCAATT
GACTCTGCTCTTGTCTAGAAACAGTGTGAATATTCTATAGCTTACTTTTG
TAAGTTTACATTTTTGTTTCGTCAAACTCGGGTTGGCTCTGTCAAGTTTT
TTGAAGGCTTAAATTGTTGCTTCAAGAgagttttataaaaagaaaaaaga
aaaacaaaaagcatACCTTTTCTGCAATTGGAAAGcgttttaaatattat
attgctgcTTATAGCTTTTTAAACATAATTTTGGTTGCTTCACATTTGTA
GGACAATGAAACAAAGGAGATCAAAGAGACAGTACCGGAAGATTACCAAT
CTACTAAAGGTAGGTTTCGTACATGTTGTCTAGTTCAATCATcccatttc
aaaatttgttcattttgattttaaagaaaGAATAAAGGAAAACAATTCAT
TTCGCTACAATTGATTACAGTAGTAGAAATGACTTATTCATAAGACACTA
GAAATGGCTGTTCGTTTAATTCCTTTTATGTAGTTTAAAATATCCTAATC
tataattcttttaaaattcaattttgggtcaaagtaggaaaaaattaaga
aaaaagtttacgAACCCCTACAATTGCAGAGTATTTAAGGCCCCATGCAG
TTGTTGACATGTTTTAACCATCCGAAATCATTACTACATTGAAAGAAGAA
TCCCTTCCCTAATGAATTGTTAATGACTTGGGATTTCTTGTTTTTCCTTC
CTGATTTATTTCCTGCTTCTATGAGAaggaaattctaaaaaaaaaaacag
gtatCTTACCATGTTGTTTTTGAGGACGAGATTTGTTTTctagatagatg
tttttttaagTCGAGCATTTTAAATCGAATCGGAAAGGGTAAGAGGAAGT
TATGGCGGATCTTGAAAAGTTTGAATGAAGTTAATTTCATATTGTCCTTG
TTTGCCATAGATCTATCTTATTTCTGAACACAATCCAACTATTCCTAATA
ATGCACTTGCCACAGGGGgcgggggtcatgcagttactaTGTGAACACTG
TGGCACTGAGTACGTGGTGGTGTAAcaactaaaaaaatttaaacagttac
tccaaagtgcacattttttcacttttttgaaaaatttccctaaatttttg
tcaaaaatttgaaattgttcgaagaaaaattgaattgtttttggaaaaat
atctgaaatttttccatgaaaataaattttttgtcatACTTATGAAAATA
GAGATCGTGGAATGCTTTGATAGTGACTTAAACCAAGTATATAAACTTAT
TCCAACAATTCttttaaatacaaaaatcaaaaaaaaaatttgaccagTGG
ATATGTCTTATAATTATATCTAAAAAAGCCTCAAATTACCCATTTTATGG
GGTGGTGTACCCCTTTTTGAGCACtaaaaacagttactccacagTGGAGT
AAGTAATGTTGGTGGTGGTGTGAcaagaaatttgccaaaatgaCAGCAGT
AACTCATCATAGTGTCACGgagtaactgcatgaccccccctgcTTTCCAG
TATAAACTAGAGTCCCCCTGTTTCCTCTCAAAGAGCGAGAACTCGGCCAA
TTCACCATGCATCGTTACTCCCTCCTCAATATCATTATATCAAGAATTAC
TACATTAAACTTACTGGTTTCTATAAACTATCTTAAGAAAATACACATTC
CCTAAATATTATTTACAGcttgtttttttaaaaatcCAACGTGTCTTTTA
CAGTCAATTTACAGTATTGTGCGCATTCTTTGCGCTTATAAGTTCTGCTT
CAAGTTCCTAAGAAGCGCGCCTCTCCTTTCTATAACATAGACAAAAATAT
CTTTAAGGGTTTGCTTTATGACGCGCTACCAAATTTTTCCTCCTTTCGAG
ATGAAGTTTTAAATTTCATAATGTTTATCTCGGTTAATTGACtgcaaaat
actttttttcttaAAGGGAAACGAAAGATTGCTCACAAGGCAAAACACAA
CGTTGTTCCAAGAGCAGTGTCCTTTAAAAACACCGACGCGGCAATCAAAA
GCCTCGGGAAAGATTTGATGACGAAAAAAGATTCGGTGACCGGACAATCA
TCGACCGACCAAACAATCGATCACGAAGAATTAATGTCTCGTTTAAACGA
ACTTGAACGAGAAGAACAGGAAGCCGAGCAACGGGAACACGACAAAATCA
TGGAAAGTATAATGGAAGGCTCGTATGTACCACCGAACGCAACCGACGAT
AATCCTCGTAAATCCTCGGTAACAAACGGCGCTAAAAGACAACCTCGAAG
ACACGTAAAATTTCATAATCTGGAGAACGAGCCCTTGTCGAGTGAAGACG
AAGAAGAGAGGTTGATTCGTTTCGACCATACCAACCTACCACcagtaaaa
atctttttcttttgttgttgtaaTTTTTACGTTCTATATAGAGCTTGCAC
TTTCGAAAACTTTACAAACAGCAACAATGAAAATGTGGAGTTtattttat
gtttcaaaaaaatgttttggcgTGCGAGATTGAAGATCTCTTGAGAATTG
AATGGATCTGAGATCTAATACATTTCGAAATgttaaaagatttagaaaaa
ttcaatttttcttttcttcatagCTGGAAAGATCATTGAGTGATTCGGAC
CTCGCAAAAGAAAGCACTATCAAAACACCAGCTGATATTTACGAACAGTT
CTACTGTGGAAGTGCTCACCTCTCCGACTCTGACGACTCCAAACCACTCA
AATCAATCCTGAAGAAAGATAGTCGATCGGGCTCCTCTGAGAATCTACGC
TTAAAACCGATTTTGAAATCGTCTCCAGAACACAGGCCTGGAACACCTGA
TAATCTCCAAGACGAGCCTCAGTCCATTCTCAAAACACCTCCCGATACTC
AGGCTAGTGACAAACGGCCAGGCACTCCGGAACACGTCTTGGACGGGCCG
TCTCCGACCCCTCAATCAATCTTAAAACCAGGAGGATTTACTAAAGAAGA
AATCCCAATGGTCGAAGATATAGATCCATCTGACTCCTCCGAAATCAGAC
CTATCCTCAAAAGCCACGAGACACCGCTATTCATTCCACCCACGGCCACT
ATTCCGACCTACGGTGATGATAGTCAGCCGCCTTCAAGACCTTCGATCCT
GAAACATTCCACAAATGCTGATAATAGTAATCCGAACACGAGATCTTTCA
GCCCTGAAGCAGCAATGGCTGGAGATTCAAACAGTATTTGGAGAAACGAT
TCGAATTCACCAGCTCGTTCTGCTCGAATTGTGTCACAAGAACCTCAACA
TCCCAATACTTCTGCCAATGAGTCGTTTGGCGAACCAAGGCCTATCCTAA
AGGCTCAGCCACAGCACAACCCACAAAGTAAAATGGTAAGcgttttgctt
tttttagtCTTGACACTTTTTGGGCATTCGGAAACAATTTaaaaccattt
gaaaccattgtgaaaaattattaaacGTTGTTTTTCAAATCCATAGTTGA
TATTTCAGGAAGAATCATAACATGAATAATATAGTAAAAATGTTACATGG
CATAAGGAGTCTGTCAAAACTAAAGCTTCACAAAGGCTTTCAATTGAATA
TCAAGCGAGGGATTGTTTTCAAATATTCTTCTAATCATTACTTTAGATCA
TCGTCATCTTGCTCTAACGCTCTAGCGATGAATTCCTCNTCTAATCTATA
CTTTAGATCATCGTCATCTTGCTCTCACGCTCTAGCGATGAATTCCTTTG
ATTGTAACACCTCTAATAATGATATCCACTTTTCCTTAAGGCTTTCTCTG
GTACCATTGTTGAAAGAGACACTGCTGAAGCAACTTCTACAACGTCCCGA
CAAAATAAAGTATGTGTTAATTCTTTGCAAAAATAAGTGTTTGGTTACTT
ACACTTAAGGCTAATGGATGAGCCTTATCTCTCTAAGTTTAATAGAAATT
AGGTAAATTACATCTAGGGGTAGACCTATAATTTTACCATCTAACTCGTA
TAAAGACTCCTTCTTGCCGAACGTAGGTCCTTGCCTATATGTTGTTTGTT
AGCCATTTTTTAAacacacttttttttctttcttgcaGCCTTCCAGTAAC
AAACCAATGTCGAAATTCAAAGCCTCAAGAATGAAGAAATGAGCTCAAAA
AAGTTGATAGCGATCGTACACGAATGTGTAGAGGGGAAGGTGaagaatgt
tttgaaatatttacaggCTTAGATCCTGGAAGCAGACGAGGTATCACAAT
ATCTTTACTTTAGATGTATTctgtttgatttttgaaaatcttaagTTATT
ATTGTGTaaatgttattattttgttgATGGCATTCAACGAAATGTAGCAA
TGCTGTTCTTGCTTACAAACTTTACCGAGATTCTATGTGGAGATGAAAAT
GGCGTCTCGGAATCTTAGGAATTCCGTAAAGGCACTCGAAAGCATGATTG
AGTCAAGTGGCTGCTCTGGTCTGCCGGCTGTATTTTGCTGCTGTGCTGTT
TAAAGTTATAGTTTTGTTACAAATGGAGATTAATTTGTCAAATCGAAAAG
TTTGTTACAAAAGCGCAAGTTAAAAGCATTACAATGatgaaataaaacat
tttacaaaaCGTGGAAAACAAAATGTACAATACTGCTGTTTTGTTCATTG
TTCAGAGACAAATGAAATTCTGCTTTCTTGTCTATCGCAACATTAAAGTC
CCAAAAATTTGAGTACTGGGTTTAATTCCAAACAATGATGTTGTCAAAAA
TGCATTTCTGTGGTTGAATGTATGATTTTTGTTCATTTGGAGTTGGAAAA
AAGACTACTTTTTCATTCAAGCTTTAACGCTGGCTTTTTGCCCCttattt
ttttacataaatTTTTACGCAGATTTATACCCAAAACTTATcaagatttg
taaaaaaatattatcatttACAGCAGTGTTAATAAAAACTGAAAgctctt
ttgttaaaaaaggaTTCTGGGTTCAATAAAGGGCATTTTTTGACCTACCC
C

Coding sequence (CDS) from alignment at scaffold_86:1043605..1053205+

>TCONS_00072936 ID=TCONS_00072936|Name=TCONS_00072936|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_86:1043605..1053205+ (Clytia hemisphaerica)
ATGGATGATTTGATGTATCTGGAACGCCTAAAAGCAGGTCAACAAAAGtt
tctcGAAGATAACTTGCAAAGGCAAGGAATAAGGAAAAATCTTGTGGAAG
ATTACAGCAAGCTAATTAAAAGATTGAAAACACTTCCTGATACTACAACG
CAGTCTACTATGGTGCCAGTTGGAGACATTGCATTTTTACCCGGAAATAT
TGTCCACACCAACGAAATTATGGTGTTACTCGGTGACAACTGGTTTGTAG
AGCGATCAGCCAAACAAGCATCAGAAATTGCTGACAGAAGACTTAAAATG
GTTGAAAAACAGTTGGATGATTTGGTGAAAGAACATGAGCACATCAAAAG
CAACTTGACGTATGCTGATCAATTCTCAATGGACAATGAAACAAAGGAGA
TCAAAGAGACAGTACCGGAAGATTACCAATCTACTAAAGGGAAACGAAAG
ATTGCTCACAAGGCAAAACACAACGTTGTTCCAAGAGCAGTGTCCTTTAA
AAACACCGACGCGGCAATCAAAAGCCTCGGGAAAGATTTGATGACGAAAA
AAGATTCGGTGACCGGACAATCATCGACCGACCAAACAATCGATCACGAA
GAATTAATGTCTCGTTTAAACGAACTTGAACGAGAAGAACAGGAAGCCGA
GCAACGGGAACACGACAAAATCATGGAAAGTATAATGGAAGGCTCGTATG
TACCACCGAACGCAACCGACGATAATCCTCGTAAATCCTCGGTAACAAAC
GGCGCTAAAAGACAACCTCGAAGACACGTAAAATTTCATAATCTGGAGAA
CGAGCCCTTGTCGAGTGAAGACGAAGAAGAGAGGTTGATTCGTTTCGACC
ATACCAACCTACCACcaCTGGAAAGATCATTGAGTGATTCGGACCTCGCA
AAAGAAAGCACTATCAAAACACCAGCTGATATTTACGAACAGTTCTACTG
TGGAAGTGCTCACCTCTCCGACTCTGACGACTCCAAACCACTCAAATCAA
TCCTGAAGAAAGATAGTCGATCGGGCTCCTCTGAGAATCTACGCTTAAAA
CCGATTTTGAAATCGTCTCCAGAACACAGGCCTGGAACACCTGATAATCT
CCAAGACGAGCCTCAGTCCATTCTCAAAACACCTCCCGATACTCAGGCTA
GTGACAAACGGCCAGGCACTCCGGAACACGTCTTGGACGGGCCGTCTCCG
ACCCCTCAATCAATCTTAAAACCAGGAGGATTTACTAAAGAAGAAATCCC
AATGGTCGAAGATATAGATCCATCTGACTCCTCCGAAATCAGACCTATCC
TCAAAAGCCACGAGACACCGCTATTCATTCCACCCACGGCCACTATTCCG
ACCTACGGTGATGATAGTCAGCCGCCTTCAAGACCTTCGATCCTGAAACA
TTCCACAAATGCTGATAATAGTAATCCGAACACGAGATCTTTCAGCCCTG
AAGCAGCAATGGCTGGAGATTCAAACAGTATTTGGAGAAACGATTCGAAT
TCACCAGCTCGTTCTGCTCGAATTGTGTCACAAGAACCTCAACATCCCAA
TACTTCTGCCAATGAGTCGTTTGGCGAACCAAGGCCTATCCTAAAGGCTC
AGCCACAGCACAACCCACAAAGTAAAATGGCTTTCTCTGGTACCATTGTT
GAAAGAGACACTGCTGAAGCAACTTCTACAACGTCCCGACAAAATAAACC
TTCCAGTAACAAACCAATGTCGAAATTCAAAGCCTCAAGAATGAAGAAAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045248XLOC_045248Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072936-proteinTCONS_00072936-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072936-exon-scaffold_86-1491911889:1043605..1043722TCONS_00072936-exon-scaffold_86-1491911889:1043605..1043722Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1043605..1043722TCONS_00072936-exon-scaffold_86-1510915933:1043605..1043722Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1043605..1043722TCONS_00072936-exon-scaffold_86-1575043694:1043605..1043722Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1046782..1046816TCONS_00072936-exon-scaffold_86-1491911889:1046782..1046816Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1046782..1046816TCONS_00072936-exon-scaffold_86-1510915933:1046782..1046816Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1046782..1046816TCONS_00072936-exon-scaffold_86-1575043694:1046782..1046816Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1047154..1047232TCONS_00072936-exon-scaffold_86-1491911889:1047154..1047232Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1047154..1047232TCONS_00072936-exon-scaffold_86-1510915933:1047154..1047232Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1047154..1047232TCONS_00072936-exon-scaffold_86-1575043694:1047154..1047232Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1047493..1047628TCONS_00072936-exon-scaffold_86-1491911889:1047493..1047628Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1047493..1047628TCONS_00072936-exon-scaffold_86-1510915933:1047493..1047628Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1047493..1047628TCONS_00072936-exon-scaffold_86-1575043694:1047493..1047628Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1048073..1048155TCONS_00072936-exon-scaffold_86-1491911889:1048073..1048155Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1048073..1048155TCONS_00072936-exon-scaffold_86-1510915933:1048073..1048155Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1048073..1048155TCONS_00072936-exon-scaffold_86-1575043694:1048073..1048155Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1048506..1048563TCONS_00072936-exon-scaffold_86-1491911889:1048506..1048563Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1048506..1048563TCONS_00072936-exon-scaffold_86-1510915933:1048506..1048563Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1048506..1048563TCONS_00072936-exon-scaffold_86-1575043694:1048506..1048563Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1050171..1050598TCONS_00072936-exon-scaffold_86-1491911889:1050171..1050598Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1050171..1050598TCONS_00072936-exon-scaffold_86-1510915933:1050171..1050598Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1050171..1050598TCONS_00072936-exon-scaffold_86-1575043694:1050171..1050598Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1050828..1051589TCONS_00072936-exon-scaffold_86-1491911889:1050828..1051589Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1050828..1051589TCONS_00072936-exon-scaffold_86-1510915933:1050828..1051589Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1050828..1051589TCONS_00072936-exon-scaffold_86-1575043694:1050828..1051589Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1051995..1052063TCONS_00072936-exon-scaffold_86-1491911889:1051995..1052063Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1051995..1052063TCONS_00072936-exon-scaffold_86-1510915933:1051995..1052063Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1051995..1052063TCONS_00072936-exon-scaffold_86-1575043694:1051995..1052063Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1052293..1052393TCONS_00072936-exon-scaffold_86-1491911889:1052293..1052393Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1052293..1052393TCONS_00072936-exon-scaffold_86-1510915933:1052293..1052393Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1052293..1052393TCONS_00072936-exon-scaffold_86-1575043694:1052293..1052393Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1491911889:1052860..1053205TCONS_00072936-exon-scaffold_86-1491911889:1052860..1053205Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1510915933:1052860..1053205TCONS_00072936-exon-scaffold_86-1510915933:1052860..1053205Clytia hemisphaericaexon
TCONS_00072936-exon-scaffold_86-1575043694:1052860..1053205TCONS_00072936-exon-scaffold_86-1575043694:1052860..1053205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1043605..1053205 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.37174e-10	8.45749e-07	0.00264382	0.14539	8.7157	4.26254	3.12231	2.64068	0.705198	2.47955	2.38747e-08	1.39216	1.03972	2.62691	0.663156	1.75623	3.74978	2.21988	1.68042	1.39064	2.22314e-09	0.0534938	3.08838	0.000143205	2.25335	2.78741	0	0	0.010084	2.2246
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004127Prefoldin_subunit_alpha
Blast
[Close]
BLAST of TCONS_00072936 vs. Swiss-Prot (Human)
Match: RMP (Unconventional prefoldin RPB5 interactor 1 OS=Homo sapiens GN=URI1 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 8.064e-25
Identity = 65/183 (35.52%), Postives = 100/183 (54.64%), Query Frame = 2 
Query:   89 LERLKAGQQKFLEDNLQRQGIRKNLVEDYSKLIKRLKTLPDTTTQSTMVPVGDIAFLPGNIVHTNEIMVLLGDNWFVERSAKQASEIADRRLKMVEKQLDDLVKEHEHIKSNLTYADQFS----MDNETKEIKETVPEDYQSTKGKRKIAHKAKHNVVPRAVSFKNTDAAIKSLGKDLMTKKD 625
            + RL+  Q+K + +  +R    K +  DY+ L +RL TLPD  + + MVP G  AF+PG +VHTNE+ VLLGDNWF + SAKQA  + + R + V K +DDL K  ++ +S + + +          +  +I+E +  D++  K K +IAHK      P+       D A     KDL+  K+
Sbjct:   30 VARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFE-FKAKHRIAHKPHSK--PKTSDIFEADIANDVKSKDLLADKE 209
The following BLAST results are available for this feature:
BLAST of TCONS_00072936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RMP8.064e-2535.52Unconventional prefoldin RPB5 interactor 1 OS=Homo... [more]
back to top