TCONS_00072992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072992
Unique NameTCONS_00072992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072992 ID=TCONS_00072992|Name=TCONS_00072992|organism=Clytia hemisphaerica|type=transcript|length=2076bp
ATAGatttcaaatgaataaaaactCATAAAAAATGACATTGTCACAAAAG
GAATTATTATCAGTCATTAGTATTCTTGCAGAAGAGTCAGCTTCAACATT
TGATGTTATATCAAATGCGCTTCATCATTATTTTGGTCCAAATGATTATT
TTCGTCTTGGAACAGCACTGCTGATGCTGTTCCAACAACCAGATTTGCTA
CCAGATCAAAACCAACGTGTAACGATTCTTTTCTTACTGTACGAGATGTA
TAGAAGTCAACCATTGGTTAAAAATCCTTTCGCCCCATTGTTTGTTCATC
TGCTCAGTGATGTACCAGATAAAACGAGCGCAATGGAAATTTCACAACct
gaaaaaatgtttctttatcAGTTGATCACGACACCAGCTGTTACTCCTCA
GCTGTTGAAAAAGACACCACGACAAGTAATGACAATGGACATCTCCAATT
TTCGACCAATCGACATAAGTGAACTTCAAGTCGCCATGTTGGAAAAGCAA
ACCGATTTACCACAAGTCTCAAGGACCGGTATCAACCCTTTGATCGCTGA
CCCGGATATGGATACTAACGGAATCGTCAATCCTGCAGTTGCACAACAAG
TGATCGAAGGGTTGATATGTAACCCACTGCACAGTGAACGAGCATTGGAG
AATTCCATACAGCCCAATTTCTTCCGGCTGCCACCTCCTCTTCATAAAGT
GGAACAAGACGAGCTCTGCTGGATGAACCCAAAAGATGATAGTTTTACTT
TCGAATGGGATACCATGATGTGCAGTGAGAATTCGGCCGAAGTTGAAGTC
AGGCAATTAATGGGAAAGGCTTTCAAAGGAGCTCTCACTCTAACACAACA
ACAGCAACTActcaaagaattggaaaaagaCAGTAAACTAGTCTATCACG
TTGGCTTGACACCGAGCAAACTCCCTGACTTAGTTGAGAACAACCCTCTG
GTTGCCATTGAAGTTCTCTTGAAAATGATGCAATCCTCGCAAATCACTGA
ATATTTCTCAGTTCTGGTCAACATGGAGATGTCCTTACATTCTATGGAGG
TTGTGAACCGCTTGACCACAGCTGTGGATTTACCACAAGAATTCATTCAC
TTCTACATCTCCAACTGTATTTCTAAATGTGAAACAATCAAAGATAAATA
CATGCAATCGAGGCTGGTACGATTGgtTTGCGTATTTCTTCAATCCTTAA
TCCGCAACAAAAGTATCAACATCCAGGACATTGCGATTGAAGTGAATGCA
TTCTGTGTGGAATTCAGTAGTATACGTGAAGCTGCTAGCCTCTTCCGATT
ATTACGTTCTGTTGAAAACAATGAGGGTGGAGAAACGAACACTAGCGGTG
GCAATAAAAGTGCAAATTCAAGTCCAACGTCTGCTACAGGAAAGTAAAGA
AGCATCAACAACTCTTTTCGCAATACAAAGTACAAATTCGAACTCGGAGG
ATTTAGAAGCTTCGGAATAACAATACACCAGATGGTATGGTTCTCTTGGT
GAAGATTTGTGAAGTCTTTTAAGGTCACTGATAGAAAAGGTTATGACTGA
GCCGCTTTACTTGATAGAGAAAGAGTTCATATCATTTtgaactttaaact
ttaaactactTTAACTGTTGATGGGAACATCGTTCAGATATGTCGCTTCA
TTATGAATTGCACTTGAAGTGACTAAAGTactaaagattttgaaaaaatg
atggattttagattttatgaGTTGAGATCATTTCAGTTTGTCCTGCTGGA
ATCATTTGGTCACACAGACATTACATTacagtaaataaatgaaaattatt
aCTTGTATAGAGGACAAGAGAAAAGTTTCACAATTTCCATTTTTCACGGA
AACATGTAAGTACCAGTTTTTCTCAAATTAATGAAGACGTGACGAAAATG
TCATGATGAAACCAATATCAAATgttcttttgataaaaatgaccTTGGGT
TTGAAATCGGAGATTATATCCTTACTCGTCTGTCTATTTCAGTTATTGTA
TCGTTTCACGACCTTTGTTTATAAGATTTTAAAGTACAGCATTTTTTCTA
GTCATTAAATCCGTGGTGGTTTTCAG
Run BLAST on NCBI

protein sequence of TCONS_00072992-protein

>TCONS_00072992-protein ID=TCONS_00072992-protein|Name=TCONS_00072992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MTLSQKELLSVISILAEESASTFDVISNALHHYFGPNDYFRLGTALLMLF
QQPDLLPDQNQRVTILFLLYEMYRSQPLVKNPFAPLFVHLLSDVPDKTSA
MEISQPEKMFLYQLITTPAVTPQLLKKTPRQVMTMDISNFRPIDISELQV
AMLEKQTDLPQVSRTGINPLIADPDMDTNGIVNPAVAQQVIEGLICNPLH
SERALENSIQPNFFRLPPPLHKVEQDELCWMNPKDDSFTFEWDTMMCSEN
SAEVEVRQLMGKAFKGALTLTQQQQLLKELEKDSKLVYHVGLTPSKLPDL
VENNPLVAIEVLLKMMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTAVDL
PQEFIHFYISNCISKCETIKDKYMQSRLVRLVCVFLQSLIRNKSINIQDI
AIEVNAFCVEFSSIREAASLFRLLRSVENNEGGETNTSGGNKSANSSPTS
ATGK
Run BLAST on NCBI

transcript from alignment at scaffold_86:417869..424476-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072992 ID=TCONS_00072992|Name=TCONS_00072992|organism=Clytia hemisphaerica|type=transcript|length=6608bp|location=Sequence derived from alignment at scaffold_86:417869..424476- (Clytia hemisphaerica)
ATAGATTTCAAATGAATAAAAACTCATAAAAAATGACATTGTCACAAAAG
GAATTATTATCAGTCATTAGTATTCTTGCAGAAGAGTCAGCTTCAACATT
TGATGTTATATCAAATGCGCTTCATCATTATTTTGGTCCAAATGATTATT
TTCGTCTTGGAACAGCACTGGTAAGTGGAAATATTAATTCAAGAAAACAT
GCTGTATACTAAGGCTGGGCTTAAAAAATTGTTGGTTTGCCGTCACCCGA
CCCTAGATTTTGAAGGTGGGTGGGTCGGTCGGATTTTTTTTTTATTTTGG
CGATTTATGAAATTTTCGTCCATAGAAGGGTTAACAGTTTGTTTACATTT
AGGTAATTTTGAATAAAAAACAGAAGTGCTAGCAGGGAATTTACGCCTAA
GAAATATTGAGCGATTTTGTATCATATCTAACTATCTTCTTCACGTAGCA
ATAAAAATGTTCACTTTTTCCAAATCATACTCTAAGATGGCTAAACTTAT
CGCAATCCCGGCTAAACTTTCCTATTGACACTTTACAACAGAAAAAGACT
GAGACTCTTGGGAGGTAATAAAGTAACTTCAACCTGTCAGTGCTGGCCAG
TAGCCTACAGTATTTCCTAGCATTTTTACGAAGCAGAAAATCTTTTCTGC
CAATATGCCTGGGTAAAGTATCAGAAAGATCCCGAAAATGCGCTGCCAGG
AATGTTGAGCTGTGAGTAAAATGTTTAGCCATTCTAGGGAAGTTAGTTTT
CATTACTAAGGACGATCTTTGCTTCATTATTTATGTTCGGATAATTAGTC
TAGACCAATTTTATTTTTTTTACATTTAACAGCTCATGAAATTCTTAAAG
GTTTTATTTTTACATTGTTTTCATGTCTCATATCAGGACAGTGTCTGCCT
ATTGTTATATTGTACTGATATAAGCAAAAAAATATTTTTCTTTTCCTCGT
TTTGACCAACCTTGCTCCATATCAGTGTCAATTCAATATTAAAAAGCTTG
CAAATTGAAATTGATGAGTAAGCAAACGATATAGCTCTTATTTGAAAACA
AAACCTTTAATAAACACTAAATGTTATATTATTTTCAAAAATGATAATTT
TACGTTTAGTGAATTGATACATTATCTCTGTATGTAAATTTTAGCTGATG
CTGTTCCAACAACCAGATTTGCTACCAGATCAAAACCAACGTGTAACGAT
TCTTTTCTTACTGTACGAGATGTATAGAAGTCAACCATTGGTTAAAAATC
CTTTCGCCCCATTGTTTGTTCATCTGCTCAGTGATGTACCAGATAAAACG
AGCGCAATGGAAATTTCACAACCTGAAAAAATGTTTCTTTATCAGTTGAT
CACGACACCAGCTGTTACTCCTCAGGTACTATGATTTGTTATAAGGGGTC
ACATGGGCCCCGGTGAGCCATTTTGAGTGAGGGGAAGAAATCTTTTCACT
TTTTACACCCTCAAAACACCTTAAAACGTTATCTAATTGGGGAGAATAAA
AGTTTTTTTGGCTTAAAATAGTAACTTTTAAAAAGTATGGCATGGTCTGC
AAAAAAGTGGGGGGCCCATGGGTCATCCACATAGTACGTACGCAAAATAT
CTCCAGATACCCCTTGTATGCGGGTCAGACTGGGGTTTTTATAAGACACA
AATACTTTGAATTTTACAGAACAATAGAAATAACGTCGTTTATACAATAG
ACGTACGCTTTTGCTAAACCACTCCCCCTTCACTGCGTACATACTACATG
GATGGCCCCTAATCAATGGATGTACCGTACCCTGTACTCTTTGTATTATG
TGGTCACCGAACTGCATATGAAGTTTTTGCAGAGCATCATATAGTTTGTT
GATACACTTAAAATATCATAAAGCTCTAATTAAAAAACGTTAAATTTATC
TGTTGTCCTGTGACGGTCATCGTAGCTGTGGTTTTCGATGTTTATCATTT
TGATAGATATTCATTTTCAATTTATTGTTGTTTTTCTTCTTACCATTTTT
AACAGCTGTTGAAAAAGACACCACGACAAGTAATGACAATGGACATCTCC
AATTTTCGACCAATCGACATAAGTGAACTTCAAGTCGCCATGTTGGAAAA
GCAAACCGATTTACCACAAGTCTCAAGGACCGGTATCAACCCTTTGATCG
CTGACCCGGATATGGATACTAACGGAATCGTCAATCCTGCAGGTAAATTA
TCAGATATATGAGTGAAAACTTCCGTCAATAGAAAAGCTACGTTATAGCA
TAATGTCCACCATCATAGAAGGGAGTATTTGGATTTTAATCTTTTCTGCG
GACCGTCCTCGCTATGTTATTGTGTTTAAGACTAGTTAAGACAGTCATTT
TACCCTGCCAGCCGACTAACATGGTTATTTACATGACTTACTTTTTTTTT
CATTTATACGAACACCCATTTTAAAATCTTGGAATTTGCTATCCCAAAAT
CCAACGTTTTATAAAAGGGTATCTCTGGTTAGGTGAATAATACAACTAGT
ATATTAGTTCATTTTTTCTAAAACCCCTCAGGAGCATACAGATTGCTCTG
GATTGTCGTGCTTAATGGGAACGACGAAATTTCTAACTGTTCCGGTCGAT
ACAAGCTCCGCGTGCCATCCCTAGTGACAGCTGTTGTTTTATATTCAATT
GAGTCTCTATAACTGGAAACCCTATAGGGAACACAAACTTGTTCGAGTTT
AGGAAATTCTGAGTGGTGAAGTGAGGTTTATAAAGCATTGTTTACTGAAG
GGACCATAAAACTTGTTCGATTTTAAGGAGGCATTTAAGTTATAGAGGTT
CGAGTTAAAGAGACTATACTGTACCAGATAAACCTTTTACCATTTCTATT
TCTTTCATTCCAGTTGCACAACAAGTGATCGAAGGGTTGATATGTAACCC
ACTGCACAGTGAACGAGCATTGGAGAATTCCATACAGCCCAATTTCTTCC
GGCTGCCACCTCCTCTTCATAAAGTGGAACAAGACGAGCTCTGCTGGATG
AACCCAAAAGGTTTGATATCCTGAAATTCTACTACTTGTTTGCAATGACT
GGAACATTTTGAGCTTAACCCTCACCAAACGCTCTCAACTGTTGAATCGA
ATTTTGAGGCTTTAAAAAAGGTTTGGTTCTTCAGATTTCCAGCGAGTAGT
ACAGATTGCTAAATACACAGGGGAGTCTCCATCTCGAAGCCGTATTGGAA
ACGTAATCTTTTTTGAGTTAATGCAAAATCAGGTTATGAGGATTATGTTA
GGATTCGTGTGATCCAACCGAACGTGATTGGTTCGAATTGTGAAACTTTT
CGAGACTTTTTTAGGGGGCACGAATCAGGCCTTGTAAAGCTTTTCATGGC
CAAAAAATTATATGAAAATGTTTTATTTATCATTTCAGATGATAGTTTTA
CTTTCGAATGGGATACCATGATGTGCAGTGAGAATTCGGCCGAAGTTGAA
GTCAGGCAATTAATGGGAAAGGCTTTCAAAGGAGCTCTCACTCTAACACA
ACAACAGGTACATGTCTTCAACTTTTTGCTCTCAAAAAATTGTGTTGATT
TCAAGGAAATTGAAAAAAAAATCTTAAAAGTTTGGGATTCTTACATTCCA
AAGTCTCTCTAAGATTGCGAAACCAAATCATTCCAAATTTGAGGAACTTG
ATAAAAACATCTTAAAGTATGTATTGTATTATCTTGGTAAGTAAGTATTA
TCTTTAATAGGGTCTGTTACTCTTGATGAATGTCAAAGACCTGTAACCAG
GAACGTATAGGTTCGTCTAACAAATAGTTTTCCCTTTTCTACTATAGCAA
CTACTCAAAGAATTGGAAAAAGACAGTAAACTAGTCTATCACGTTGGCTT
GACACCGAGCAAACTCCCTGACTTAGTTGAGAACAACCCTCTGGTTGCCA
TTGAAGTTCTCTTGAAAATGATGCAATCCTCGCAAATCACTGAGTAAGGG
ATTAAGTTTAAATATCGTTTTGTTTTTATCAAATAAATTCATATTTAAAT
TAGCCTCCATCTCTTCTATATCAAGGTCGATTCTTAATATTTCTTAATAT
TTGCCTTTTCAACATCTCGCTGGTCACAAGCACAATCAAGATCAAAGGAA
GCACTAAACTTTTTTCGTTTTTAGTGAATCTTTCTAAGAAAAAAATGGCT
TGGTATTCTAGCTCATTTTCTGAAATATTTGCTTTGACCACCCCTGATGT
TATACCATATTTTTGCTTATTGGGCCAGGGGCTTTCGTTTGCCATGGTTA
AAAAGCCATAATTTGCCATGGTTCTAAAAAGCTTTACTTTTCAAAATAGC
GAGAAAAAAATTCTCAAATTTCAGGGCTCGAGCCTTAGTAACATGGTTGC
TTATAAGAAGAAAAAAATGTGTAACAGGGTTCGGTAGCTATCCAGCTAAA
AGTTCAATCGAAAAAAAAGCTTTAACCAAATTTGTTCTTTCTAGATATTT
CTCAGTTCTGGTCAACATGGAGATGTCCTTACATTCTATGGAGGTTGTGA
ACCGCTTGACCACAGCTGTGGATTTACCACAAGAATTCATTCACTTCTAC
ATCTCCAACTGTATTTCTAAATGTGAAACAATCAAAGATAAATACATGCA
ATCGAGGCTGGTACGATTGGTAAGTTTGTTTGGTACGCATACCCTTGTTT
CCATTTTAATAACGTATTTACAATTGAAGCGTTAATTACGATAAACTTGA
GCAAAGTCAGACCATCGGCTAAGCCGAAAATAAAATTGACGGAAATTTCG
TGGTATAAATGGTCTTCAAAATACCAGAGAGGCATGTGGGTGCAGGACTG
AAATTTCTGATACCTATTACTGGTCAAAAAACGCAGCAGTCTCTGAGTTC
TGAGGATGGATCCAGCTGCAAGTTTCTTTTGCCTCTTATACAAATCATCC
TTCCTCCCAAGAACAACACATTAGATCAAATCAATTAGAAAATAGTTTTT
TTAGCCTTGTCCACGTTCCTGTGTGTAAAATACCAACCAAACAAGTGGTA
ATACCAACCAAACAAGTGGTAATACCAACCAAACAAGTGGTAATACCAAC
CAAACAAGTGGTAATACCAACCAAACAAGTGGTAATACCAACCAAACAAG
TGGTAATACCAACCAAACAAGTGGTTTTGCCTAAATAAAAAATTTCCGAT
TCTCCATATTATCGAGCGCCGGAGGCGGTTTCTTTCATAGTGGTACGCTA
ATCTCGTTTTGCCTTGGCTCATTACTTTGTCTACCATTTACTTTCGGTTT
TTTTAACTGGATTACCCAGGTGTTTCTATTTTTTTTCACTGAATGTCTTT
TATTCGGAATTGAATAATCGAGACATGAAAAATGACTATATTGTAATTTG
AGATGACTTGTAGGCGTTAATAATGTGCGCGCGTGATGCGTGATGGAAGG
CGGTCGTTTCAGTGTGGTTTACATCCACACTGTGACCTAGTATTTACCCA
GCGAGCTTTAATAATTACAACTCACTGATCTACCAGTGGTAAAAATTTCG
AAGTAAAAGTACTTGTCAATCTTCAAATTTTCATGAAGATGTTTCCCTCA
CTAAACATAGGTAGATGTAGGAGGATTAAGAATTATAATAAAAACATTTT
ATGCTCTGATACTTATTGAGGAGTAATTTATTGGAAGAAAAATTCTGGTT
TTTGGCTATTTTTACCACCAACTGTTGCTAAATCTTTCGTTTTTTTTCGT
TTTTTAGGTTTGCGTATTTCTTCAATCCTTAATCCGCAACAAAAGTATCA
ACATCCAGGACATTGCGATTGAAGTGAATGCATTCTGTGTGGAATTCAGT
AGTATACGTGAAGCTGCTAGCCTCTTCCGATTATTACGTTCTGTTGAAAA
CAATGAGGGTGGAGAAACGAACACTAGCGGTGGCAATAAAAGTGCAAATT
CAAGTCCAACGTCTGCTACAGGAAAGTAAAGAAGCATCAACAACTCTTTT
CGCAATACAAAGTACAAATTCGAACTCGGAGGATTTAGAAGCTTCGGAAT
AACAATACACCAGATGGTATGGTTCTCTTGGTGAAGATTTGTGAAGTCTT
TTAAGGTCACTGATAGAAAAGGTTATGACTGAGCCGCTTTACTTGATAGA
GAAAGAGTTCATATCATTTTGAACTTTAAACTTTAAACTACTTTAACTGT
TGATGGGAACATCGTTCAGATATGTCGCTTCATTATGAATTGCACTTGAA
GTGACTAAAGTACTAAAGATTTTGAAAAAATGATGGATTTTAGATTTTAT
GAGTTGAGATCATTTCAGTTTGTCCTGCTGGAATCATTTGGTCACACAGA
CATTACATTACAGTAAATAAATGAAAATTATTACTTGTATAGAGGACAAG
AGAAAAGTTTCACAATTTCCATTTTTCACGGAAACATGTAAGTACCAGTT
TTTCTCAAATTAATGAAGACGTGACGAAAATGTCATGATGAAACCAATAT
CAAATGTTCTTTTGATAAAAATGACCTTGGGTTTGAAATCGGAGATTATA
TCCTTACTCGTCTGTCTATTTCAGTTATTGTATCGTTTCACGACCTTTGT
TTATAAGATTTTAAAGTACAGCATTTTTTCTAGTCATTAAATCCGTGGTG
GTTTTCAG

Coding sequence (CDS) from alignment at scaffold_86:417869..424476-

>TCONS_00072992 ID=TCONS_00072992|Name=TCONS_00072992|organism=Clytia hemisphaerica|type=CDS|length=1365bp|location=Sequence derived from alignment at scaffold_86:417869..424476- (Clytia hemisphaerica)
ATGACATTGTCACAAAAGGAATTATTATCAGTCATTAGTATTCTTGCAGA
AGAGTCAGCTTCAACATTTGATGTTATATCAAATGCGCTTCATCATTATT
TTGGTCCAAATGATTATTTTCGTCTTGGAACAGCACTGCTGATGCTGTTC
CAACAACCAGATTTGCTACCAGATCAAAACCAACGTGTAACGATTCTTTT
CTTACTGTACGAGATGTATAGAAGTCAACCATTGGTTAAAAATCCTTTCG
CCCCATTGTTTGTTCATCTGCTCAGTGATGTACCAGATAAAACGAGCGCA
ATGGAAATTTCACAACCTGAAAAAATGTTTCTTTATCAGTTGATCACGAC
ACCAGCTGTTACTCCTCAGCTGTTGAAAAAGACACCACGACAAGTAATGA
CAATGGACATCTCCAATTTTCGACCAATCGACATAAGTGAACTTCAAGTC
GCCATGTTGGAAAAGCAAACCGATTTACCACAAGTCTCAAGGACCGGTAT
CAACCCTTTGATCGCTGACCCGGATATGGATACTAACGGAATCGTCAATC
CTGCAGTTGCACAACAAGTGATCGAAGGGTTGATATGTAACCCACTGCAC
AGTGAACGAGCATTGGAGAATTCCATACAGCCCAATTTCTTCCGGCTGCC
ACCTCCTCTTCATAAAGTGGAACAAGACGAGCTCTGCTGGATGAACCCAA
AAGATGATAGTTTTACTTTCGAATGGGATACCATGATGTGCAGTGAGAAT
TCGGCCGAAGTTGAAGTCAGGCAATTAATGGGAAAGGCTTTCAAAGGAGC
TCTCACTCTAACACAACAACAGCAACTACTCAAAGAATTGGAAAAAGACA
GTAAACTAGTCTATCACGTTGGCTTGACACCGAGCAAACTCCCTGACTTA
GTTGAGAACAACCCTCTGGTTGCCATTGAAGTTCTCTTGAAAATGATGCA
ATCCTCGCAAATCACTGAATATTTCTCAGTTCTGGTCAACATGGAGATGT
CCTTACATTCTATGGAGGTTGTGAACCGCTTGACCACAGCTGTGGATTTA
CCACAAGAATTCATTCACTTCTACATCTCCAACTGTATTTCTAAATGTGA
AACAATCAAAGATAAATACATGCAATCGAGGCTGGTACGATTGGTTTGCG
TATTTCTTCAATCCTTAATCCGCAACAAAAGTATCAACATCCAGGACATT
GCGATTGAAGTGAATGCATTCTGTGTGGAATTCAGTAGTATACGTGAAGC
TGCTAGCCTCTTCCGATTATTACGTTCTGTTGAAAACAATGAGGGTGGAG
AAACGAACACTAGCGGTGGCAATAAAAGTGCAAATTCAAGTCCAACGTCT
GCTACAGGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045274XLOC_045274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072992-exon-scaffold_86-1575043694:424307..424476TCONS_00072992-exon-scaffold_86-1575043694:424307..424476Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1575043694:423102..423332TCONS_00072992-exon-scaffold_86-1575043694:423102..423332Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1575043694:422285..422471TCONS_00072992-exon-scaffold_86-1575043694:422285..422471Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1575043694:421467..421613TCONS_00072992-exon-scaffold_86-1575043694:421467..421613Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1575043694:420970..421088TCONS_00072992-exon-scaffold_86-1575043694:420970..421088Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1575043694:420534..420679TCONS_00072992-exon-scaffold_86-1575043694:420534..420679Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1575043694:419858..420032TCONS_00072992-exon-scaffold_86-1575043694:419858..420032Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1575043694:417869..418769TCONS_00072992-exon-scaffold_86-1575043694:417869..418769Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:424307..424476TCONS_00072992-exon-scaffold_86-1510915933:424307..424476Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:423102..423332TCONS_00072992-exon-scaffold_86-1510915933:423102..423332Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:422285..422471TCONS_00072992-exon-scaffold_86-1510915933:422285..422471Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:421467..421613TCONS_00072992-exon-scaffold_86-1510915933:421467..421613Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:420970..421088TCONS_00072992-exon-scaffold_86-1510915933:420970..421088Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:420534..420679TCONS_00072992-exon-scaffold_86-1510915933:420534..420679Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:419858..420032TCONS_00072992-exon-scaffold_86-1510915933:419858..420032Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1510915933:417869..418769TCONS_00072992-exon-scaffold_86-1510915933:417869..418769Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:424307..424476TCONS_00072992-exon-scaffold_86-1491911889:424307..424476Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:423102..423332TCONS_00072992-exon-scaffold_86-1491911889:423102..423332Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:422285..422471TCONS_00072992-exon-scaffold_86-1491911889:422285..422471Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:421467..421613TCONS_00072992-exon-scaffold_86-1491911889:421467..421613Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:420970..421088TCONS_00072992-exon-scaffold_86-1491911889:420970..421088Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:420534..420679TCONS_00072992-exon-scaffold_86-1491911889:420534..420679Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:419858..420032TCONS_00072992-exon-scaffold_86-1491911889:419858..420032Clytia hemisphaericaexon
TCONS_00072992-exon-scaffold_86-1491911889:417869..418769TCONS_00072992-exon-scaffold_86-1491911889:417869..418769Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072992-proteinTCONS_00072992-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:417869..424476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.7557	38.914	66.4403	64.5173	42.1291	31.6912	30.2453	32.2492	23.7794	24.0398	18.4243	14.7564	15.1782	14.0434	17.4694	18.7474	29.4718	25.2656	9.11025	10.9706	14.588	15.9964	33.0959	30.6238	23.1565	25.6375	10.5528	8.11992	18.4338	20.6722
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019312CNOT11
Vocabulary: Cellular Component
TermDefinition
GO:0030014CCR4-NOT complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0030014 CCR4-NOT complex
Blast
[Close]
BLAST of TCONS_00072992 vs. Swiss-Prot (Human)
Match: CNO11 (CCR4-NOT transcription complex subunit 11 OS=Homo sapiens GN=CNOT11 PE=1 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 3.089e-166
Identity = 259/443 (58.47%), Postives = 323/443 (72.91%), Query Frame = 3 
Query:   33 MTLSQKELLSVISILAEESA--STFDVISNALHHYFGPNDYFRLGTALLMLFQQPDLLPDQNQRVTILFLLYEMYRSQPLVKNPFAPLFVHLLSDVPDKTSAME------------ISQPEKMFLYQLITTPAVTPQLLKKTPRQVMTMDISNF-RPIDISELQVAMLEKQTDLPQVSRTGINPLIADPDMDT-NGIVNPAVAQQVIEGLICNPLHSERALENSIQPNFFRLPPPLHKVEQDELCWMNPKDDSFTFEWDTMMCSENSAEVEVRQLMGKAFKGAXXXXXXXXXXXXXXXDSKLVYHVGLTPSKLPDLVENNPLVAIEVLLKMMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTAVDLPQEFIHFYISNCISKCETIKDKYMQSRLVRLVCVFLQSLIRNKSINIQDIAIEVNAFCVEFSSIREAASLFRLLRSV 1313
            M+L+ KEL S++SI++EE+   STF+ +S A HHYF   D+FRLG+ L+ML QQPDLLP   QR+T L+LL+EMYR++PL  NPFA  F HLL+  P      E            I+ PEK FL QL+  P    +L KKTPRQ+  MD+ N  + +DIS LQ+A+ E+Q++LP  S+     +++DPD D+ N   + +VA Q+ E L+  P   +  +E+  +P F R PPPLH  E DEL W+NP +     +WD  MC +NS  VE++++M KAFK  L+  QQ QLL ELEKD KLVYH+GLTP+KLPDLVENNPLVAIE+LLK+MQSSQITEYFSVLVNM+MSLHSMEVVNRLTTAVDLP EFIH YISNCIS CE IKDKYMQ+RLVRLVCVFLQSLIRNK IN+QD+ IEV AFC+EFS IREAA LFRLL+++
Sbjct:   61 MSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPR--ELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGP---KPPIESHFRPEFIRPPPPLHICE-DELAWLNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 497
The following BLAST results are available for this feature:
BLAST of TCONS_00072992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNO113.089e-16658.47CCR4-NOT transcription complex subunit 11 OS=Homo ... [more]
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