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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073306 ID=TCONS_00073306|Name=TCONS_00073306|organism=Clytia hemisphaerica|type=transcript|length=609bp
ATTTTCCCGAATCAAAATAAGCTTAAGgaacacaaaacaaaaagccAACA
CCTTCAAAGGAAAAGGAAGAAACAAAACCAAACTGAACCAAAAAGAAAAC
AACTAAGAATTGATGAAATGaatatccAAAGAACTGAAAATATAGCAGAG
GAGAAAGATGACGATGTCGAAACAGGTGGAGGGAATATTGAAATGCAAGC
AGAGGAAACCGGAGGTGAAACGACGGAGGGCGAAGAAGATGAGGAGGtcg
aagatgaagaagaaaacgaagaagaagacTTTTGTTTTGGTTGTGAACGC
GCCAGACCGCCAGCAGTAACAGACGATGATGATTTGGCATGGATACAATG
TGAGCAGCCTGATTGCGAAAAGTGGTACCACAAAGATTGTATGCCTGtaa
aatcgaaagcaaaacGTATCGCTAACGGCAGGAAGTGGTTTTGTTGTATC
TGAAATCTCTCCATAACCTAgcttttgattttatatttatCGTATGCGTT
TTACCATTTGATTCAGGGATTTTTCTTATTGTTTGATATTTCGTTAGTAG
GGAACTCAACTTTCTGTTTTATATCTTTATCACCCATGTCCAGTCCTAGC
TTCTTCTTG Run BLAST on NCBI protein sequence of TCONS_00073306-protein >TCONS_00073306-protein ID=TCONS_00073306-protein|Name=TCONS_00073306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
IFPNQNKLKEHKTKSQHLQRKRKKQNQTEPKRKQLRIDEMNIQRTENIAE
EKDDDVETGGGNIEMQAEETGGETTEGEEDEEVEDEEENEEEDFCFGCER
ARPPAVTDDDDLAWIQCEQPDCEKWYHKDCMPVKSKAKRIANGRKWFCCI Run BLAST on NCBI transcript from alignment at scaffold_9:154379..155403+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073306 ID=TCONS_00073306|Name=TCONS_00073306|organism=Clytia hemisphaerica|type=transcript|length=1025bp|location=Sequence derived from alignment at scaffold_9:154379..155403+ (Clytia hemisphaerica)
ATTTTCCCGAATCAAAATAAGCTTAAGGTATCGCTCTTTTTACGAGGACT
TACTATCATTAAGGAATTCGAATTTCCGTTCATTTTCTTTCTTGTCCTGG
CCTGAGAAGTACTTTAGCAAAGCGGAATATTTTGAATAATACATCCTAAA
ATATATATCTTCTCTTTAAAACGTACCGTTACTTCATTGAATCTTCTCAC
CAAATTCTCAggaacacaaaacaaaaagccAACACCTTCAAAGGAAAAGG
AAGAAACAAAACCAAACTGAACCAAAAAGAAAACAACTAAGAATTGATGA
AATGGTAAGAGTCAGTTTTGAAGCTCATGGATTTATAATATTCACAAGTT
CCAATAAAAAATTAATCTCTTCATCAAATATTCTTTAACTttaaattatt
cagaatatccAAAGAACTGAAAATATAGCAGAGGAGAAAGATGACGATGT
CGAAACAGGTGGAGGGAATATTGAAATGCAAGCAGAGGAAACCGGAGGTG
AAACGACGGAGGGCGAAGAAGATGAGGAGGtcgaagatgaagaagaaaac
gaagaagaagacTTTTGTTTTGGTTGTAAGTAATTAATTCTACACCATTT
GCCGTGAATGTTTTTCTTCTATTGCACTCTGTCAAATAATATCCTACAGT
TacgattttgaaatatttataattCGATAAATGAAGTCTGCGTCAATCAC
GTTTTCAGGTGAACGCGCCAGACCGCCAGCAGTAACAGACGATGATGATT
TGGCATGGATACAATGTGAGCAGCCTGATTGCGAAAAGTGGTACCACAAA
GATTGTATGCCTGtaaaatcgaaagcaaaacGTATCGCTAACGGCAGGAA
GTGGTTTTGTTGTATCTGAAATCTCTCCATAACCTAgcttttgattttat
atttatCGTATGCGTTTTACCATTTGATTCAGGGATTTTTCTTATTGTTT
GATATTTCGTTAGTAGGGAACTCAACTTTCTGTTTTATATCTTTATCACC
CATGTCCAGTCCTAGCTTCTTCTTG Coding sequence (CDS) from alignment at scaffold_9:154379..155403+ >TCONS_00073306 ID=TCONS_00073306|Name=TCONS_00073306|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_9:154379..155403+ (Clytia hemisphaerica)
ATTTTCCCGAATCAAAATAAGCTTAAGgaacacaaaacaaaaagccAACA
CCTTCAAAGGAAAAGGAAGAAACAAAACCAAACTGAACCAAAAAGAAAAC
AACTAAGAATTGATGAAATGaatatccAAAGAACTGAAAATATAGCAGAG
GAGAAAGATGACGATGTCGAAACAGGTGGAGGGAATATTGAAATGCAAGC
AGAGGAAACCGGAGGTGAAACGACGGAGGGCGAAGAAGATGAGGAGGtcg
aagatgaagaagaaaacgaagaagaagacTTTTGTTTTGGTTGTGAACGC
GCCAGACCGCCAGCAGTAACAGACGATGATGATTTGGCATGGATACAATG
TGAGCAGCCTGATTGCGAAAAGTGGTACCACAAAGATTGTATGCCTGtaa
aatcgaaagcaaaacGTATCGCTAACGGCAGGAAGTGGTTTTGTTGTATC
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073306-exon-scaffold_9-1491911889:154379..154405 | TCONS_00073306-exon-scaffold_9-1491911889:154379..154405 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1510915933:154379..154405 | TCONS_00073306-exon-scaffold_9-1510915933:154379..154405 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1575043694:154379..154405 | TCONS_00073306-exon-scaffold_9-1575043694:154379..154405 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1491911889:154590..154682 | TCONS_00073306-exon-scaffold_9-1491911889:154590..154682 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1510915933:154590..154682 | TCONS_00073306-exon-scaffold_9-1510915933:154590..154682 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1575043694:154590..154682 | TCONS_00073306-exon-scaffold_9-1575043694:154590..154682 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1491911889:154782..154953 | TCONS_00073306-exon-scaffold_9-1491911889:154782..154953 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1510915933:154782..154953 | TCONS_00073306-exon-scaffold_9-1510915933:154782..154953 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1575043694:154782..154953 | TCONS_00073306-exon-scaffold_9-1575043694:154782..154953 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1491911889:155087..155403 | TCONS_00073306-exon-scaffold_9-1491911889:155087..155403 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1510915933:155087..155403 | TCONS_00073306-exon-scaffold_9-1510915933:155087..155403 | Clytia hemisphaerica | exon |
| TCONS_00073306-exon-scaffold_9-1575043694:155087..155403 | TCONS_00073306-exon-scaffold_9-1575043694:155087..155403 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:154379..155403 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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