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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073550 ID=TCONS_00073550|Name=TCONS_00073550|organism=Clytia hemisphaerica|type=transcript|length=1776bp
GCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCTGTGCAC
CTGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAGGAATTG
TACCAATGGAATAGTCTAAGCGCGCTATCTTTGAACACGTTGGAAATGCA
GTTGAGCAAGAACTACACTGTCCGTTGTGGTAACTGGGAAGCGCAATCCC
TCTCGCGAAAACAGATCATGTATGCTGCAAAAGATGCCATCGTATCTTTA
GAAATCTTTTACGCTCTCGTTTTGCTACGTCGAGTTCGACGCCGTCAAGG
GCGTGACGTATTAGACGGGATGTTTGAATCTTCAGTCGATTTTCATAAAA
TGCTGCAAGGTTTTCAGGAGAGCTCCTCTTCATGTTTCTACTACTCTCAT
AGTAAAGACACTCTTAATGATGTGGATGCCATTTTGCCGACGGATACACT
GAGAACGTCACCTTCTCAAAGTTTAACAGAACTTTCTCACTCCTTATGTC
AAGGGATAGTAGACATCAAACATAAACCGAAACTGGTGATGAATCACAAT
GTGCAGAAGACAGCATCCAGAGCTTACTCCACAACTAAACAAACAACAAC
TCAACTAGACAAAACATCTAAACGTTATAACCATCAATGTAGAGATAAAC
CATTGTATGAAAACTGCTTTCTGATTGGTCCAGATAAACAAGTACTGGCA
ACTGTCAATCGTACAAAAGCAGAATGGTATTTACACAAAAATATTGgAGT
CGTTGAAAAGGATGAACCATTCACTGTCCGGTTATTATTCGAGCCTTCCG
GAAAACCAAAACCGGACGCTGACTACTACACAACAGTCAAAGAAAACGTA
TGTACCGTGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACATCATTCC
TCATGATTATCGGAAATATTTTCCACAGCAGATGAAAGACCACATGTCAC
ATGATGTCCTTTTGTTCTGTATAGATTGTCATCGTACTGCACAATACTTT
GACGACCAAGTACGACAAGACCTTGCCACCAAGTATAAAGCTCCCCTCGG
TACCAAACAAAATATGTTTAAAACGGACAACCCTCAGCTCGGGCGTGTGC
GATCAGCCGCCAAAGCGCTATTAAAGAATTCTGCTAACATTCCAACAGCT
AGACGTGAAGAACTAGAAGCcataattttaaaccacttCAAGGTGAATTC
GGTTAATACACAATTACTTAAAGACACTATGGATATGGATATACGCGTTG
AGAACAACAAATTCTTAGGATTACATGGCGAGAGGGTCGTAAAAGGGCTG
TTAGAAGAGAATGATTTAATAGAATTCATTAAGATGTGGAGACAACGTTT
CTTGGATACAATGAAACCCAAATTTCTACCACCGCTTTGGTCTGTTGATC
ACAATCTACAGAAATTCAACGCCTCAAATTGAACTATCCTGATTCTATAT
TCACTATTGAACTTTTAATTGATAGCTTTCCATTTCATTGAATTTCAtcg
gatttttcataaaatGTTCAGTCATATTTTCCATAGGAGCCTATGAAGCA
TTTCCCGTCCTCTAAACTTTGTCTCGctaatgttttgttcttttcaaaga
aataaagcGGCCCCCAATACCTTGTActttaaaagtcttttttttctgAA
TTGAAATTCTTGGATCATCACTTTTGACGCTGTGTCCTGCcgtattttgt
tgttgatttttacaTTGATTTTCTAGGTATAACTAATAGATTTATatttt
tagaaacaaaatttCTTAGATATTTT Run BLAST on NCBI protein sequence of TCONS_00073550-protein >TCONS_00073550-protein ID=TCONS_00073550-protein|Name=TCONS_00073550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
QVKGFVDLRNLAHRCAPGVSGGKPDFDNPEEELYQWNSLSALSLNTLEMQ
LSKNYTVRCGNWEAQSLSRKQIMYAAKDAIVSLEIFYALVLLRRVRRRQG
RDVLDGMFESSVDFHKMLQGFQESSSSCFYYSHSKDTLNDVDAILPTDTL
RTSPSQSLTELSHSLCQGIVDIKHKPKLVMNHNVQKTASRAYSTTKQTTT
QLDKTSKRYNHQCRDKPLYENCFLIGPDKQVLATVNRTKAEWYLHKNIGV
VEKDEPFTVRLLFEPSGKPKPDADYYTTVKENVCTVCGSTENFVKKNIIP
HDYRKYFPQQMKDHMSHDVLLFCIDCHRTAQYFDDQVRQDLATKYKAPLG
TKQNMFKTDNPQLGRVRSAAKALLKNSANIPTARREELEAIILNHFKVNS
VNTQLLKDTMDMDIRVENNKFLGLHGERVVKGLLEENDLIEFIKMWRQRF
LDTMKPKFLPPLWSVDHNLQKFNASN Run BLAST on NCBI transcript from alignment at scaffold_94:455851..460207- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073550 ID=TCONS_00073550|Name=TCONS_00073550|organism=Clytia hemisphaerica|type=transcript|length=4357bp|location=Sequence derived from alignment at scaffold_94:455851..460207- (Clytia hemisphaerica)
GCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCTGTGCAC
CTGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAGGAATTG
TAAGTATTACCTGTTGGTGCAGGTTGGTGTCGAATAGAGAAGTCTTTGAA
AACGGGAAATAGAGAGCTAGTCTAGTACTCAGTTGTCCTAAGTACTGATC
ACTACTAGGTAAAAAACATCCATGTTCAATGTTTTTCATTGACTGTCAAT
TGCAAATTATTGACAAAAAATTCTTTATATTGACTTTCAATTGGTTTTTT
GAAAAGTCAAAGAATAATATTGACCGTTGATATTGATTTTAAACTTCTCA
CGTAATCGTGTTTTGAGCTAGCATCGCCTGTACATCATTCGTACATGTCA
AGGTTTTTACGTGTGTTAAAAACAATGCTTATTGTGTATGTTTTGCCTCA
CCACTGTCTTATAAAATCATATTTTGTTGCAAGNACATGTCAAGGTTTTT
ACGTGTGTTAAAAACAATGCTTATTGTGTATGTTTTGCCTCACCACTGTC
TTATAAAATCATATTTTGTTGCAAGGAGGTGTTTCAATTTCTGATTCAAT
TCAAGCTTAAGAACAGTACTTCCTATAATTTGTGATAATATAAATCTTTC
AAATTTTGTTACTTTAGGTACCAATGGAATAGTCTAAGCGCGCTATCTTT
GAACACGTTGGAAATGCAGTTGAGCAAGAACTACACTGTCCGTTGTGGTA
ACTGGGAAGCGCAATCCCTCTCGCGAAAACAGATCATGTATGCTGCAAAA
GATGCCATCGTATCTTTAGAAATCTTTTACGCTCTCGTTTTGCTACGTCG
AGTTCGACGCCGTCAAGGGCGTGACGTATTAGACGGGATGTTTGAATCTT
CAGTCGATTTTCATAAAATGCTGCAAGGTTTTCAGGAGAGCTCCTCTTCA
TGTTTCTACTACTCTCATAGTAAAGACACTCTTAATGATGTGGATGCCAT
TTTGCCGACGGATACACTGAGAACGTCACCTTCTCAAAGTTTAACAGAAC
TTTCTCACTCCTTATGTCAAGGGATAGTAGACATCAAACATAAACCGAAA
CTGGTGATGAATCACAATGTGCAGAAGACAGCATCCAGAGCTTACTCCAC
AACTAAACAAACAACAACTCAACTAGACAAAACATCTAAACGTTATAACC
ATCAATGTAGAGATAAACCATTGTATGAAAACTGCTTTCTGATTGGTCCA
GATAAACAAGTACTGGCAACTGTCAATCGTACAAAAGCAGAATGGTATTT
ACACAAAAATATTGGTATGGAAGTTTTGTAGTGTTGTCTAAGGTCGATTG
CATATCGTTTTTCACTTTTAGATACAACCATATGTATGACTGAATATTAG
TAAGGGGCTTTCTTAGAACTTGTAACATAATTTCCGGAGTAAAAGTTTTT
GACTGTGTAAAAAAAACTTAGAGACTTTTCTGAAAAGGCTTACGTGAATG
TTTTTGTGCTAAAACTGTCAGGTCAGGAAAGCACGTGTAAAAATGAACAT
TTTTTGGTACCATTGGAGTATTAAATTTCGAGGAAAAACATACTACAAGC
AAAATATCCCTGACTCGATTATATTTTTTAAGGTCGAAGTCCTGTCAGTT
TCATTACAACTGACGTCAGATTCCATACACTTGATATAACAGAATTTCTA
ACTTTTGTTATGTTTTCTTGGGATATGTAGTATGTACACTATTCCGCTCA
GAATTTCATGCTTTATCTGAATGAATTTTATCATTCACTTAATTCATTCG
TCCAGGAGTCATCCACATAGTACGTGCGCAAAAACTCTCCAGATTTTTGC
CACCCCTCCCCCTTGTACACAGGGAACAATTTAGAAATGCCGTCATTCAA
ACAATAGACGTACGCTTTTGCTAAACCCCCTCTCCCCTCTTCGCTGCGTA
CATACTATAGTGATGGCCCCAAGGCATAATTCATGTACCACCTGTCGTGT
ACCCTATGTCCTAAGGAATGTTCCCTTACTTATAGTGTGTACGACATTTT
TGATAAAAGTCACGCAGTTTCTTTTTGAAAAGTTTATTTTTAGGTTTCTT
ACCAAGCAAGAGATATCATTTAATCGGATTTAAATTTCGCGGTATTTAAA
TTTTCGGNACGACATTTTTGATAAAAGTCAGGTAGTTTCTTTTTGAAAAG
TTTATTTTTAGGTTTCTTACCAAGCAAGAGATATCATTTAATCGGATTTA
AATTTCGCGGTATTTAAATTTTCGGGATTTATTTAGCGGGTCAGCATTTT
CAAATATTTTGCGTGGATTTAACTTCGGAAAGCGGCGAATAAAATTCAGT
TGAGAATGACACTGAAAAACGCCAATTTGTTAAAAATCTCCCGAATCAAC
TTCCTCACGGGATTCTGTGCATTTTTTCCGCGAAAAAAGGGAAAAATTTG
CGAAAACGTGAAATTAAATCTCACAAAAATTAATCCTAATCTTCAGTTTT
CTGAATAGATTGATGAATTTATTTTTTATTAATTTTCAGGAGTCGTTGAA
AAGGATGAACCATTCACTGTCCGGTTATTATTCGAGCCTTCCGGAAAACC
AAAACCGGACGCTGACTACTACACAACAGTCAAAGAAAACGTATGTACCG
TGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACATCATTCCTCATGAT
TATCGGAAATATTTTCCACAGCAGATGAAAGACCACATGTCACATGATGT
CCTTTTGTTCTGTATAGATTGTCATCGGTGAGATTGCTTTTTTTTCTTCT
GATAGAAAGGGTTTCATATGACGGTTATGATATGATGATACTATTGAGAT
GATAATCTGATAGATTTCCCACTTTAATGCTCATAATGATCTGTATTGCC
TTTTCTGAAATTCAGTTGTAATCTAAAATCAAGTCATACACCATGTTCAC
ACGTTAATGTTCCGTTTCGCTCCGGTATGATTTTCGTTACGGATCGAGTG
TGTTTATATTGGTTTTGGTACGTGTTCGGAGCAAGAAAACGGAGTGCAGT
TCCGTTCTGAAGGCCGGTGTCCACTTTCGCGCGAAACTTTTCACGTTATT
TGTAACGTCATTGGTTGATTGAAAAAAGAAGCAATTCCATTGTTCAAAAT
TGACGTAACGGTTGAAAAAAGTTTAACTCCCTTCAACTTTTTTTTTGTTC
GCGCGAAACTTTTTTATGACGTAATCCTTTCTTCAGGCAAAAACGGTTAA
GAAAAAATCTTTCGCGCGCTTCACACGAAAGTGGACACCGGCCTTGATGA
AAAAAGTGGAGCGAAACCGTTTCGATCTGTTTTGCTTTGTAATGTCTTCT
TTTTTGACGTTTCCAATTTTGACGTTCACACTTGTTTCGGAACCGTTTCG
TCTGAACATAGGCATAATCTATTTCCTGCTCTTTGCCACTAGTGGGACTA
GAATATATCTTGTCAGCATAAACTTCTCTTTATTAGGAAGAAGAATATGG
GTTGACGTATTTTAGTTTTATATCCACCTAGTTACTCAAATGCGTACGAT
TATTTACTTTTTCAGTACTGCACAATACTTTGACGACCAAGTACGACAAG
ACCTTGCCACCAAGTATAAAGCTCCCCTCGGTACCAAACAAAATATGTTT
AAAACGGACAACCCTCAGCTCGGGCGTGTGCGATCAGCCGCCAAAGCGCT
ATTAAAGAATTCTGCTAACATTCCAACAGCTAGACGTGAAGAACTAGAAG
CCATAATTTTAAACCACTTCAAGGTGAATTCGGTTAATACACAATTACTT
AAAGACACTATGGATATGGATATACGCGTTGAGAACAACAAATTCTTAGG
ATTACATGGCGAGAGGGTCGTAAAAGGGCTGTTAGAAGAGAATGATTTAA
TAGAATTCATTAAGATGTGGAGACAACGTTTCTTGGATACAATGAAACCC
AAATTTCTACCACCGCTTTGGTCTGTTGATCACAATCTACAGAAATTCAA
CGCCTCAAATTGAACTATCCTGATTCTATATTCACTATTGAACTTTTAAT
TGATAGCTTTCCATTTCATTGAATTTCATCGGATTTTTCATAAAATGTTC
AGTCATATTTTCCATAGGAGCCTATGAAGCATTTCCCGTCCTCTAAACTT
TGTCTCGCTAATGTTTTGTTCTTTTCAAAGAAATAAAGCGGCCCCCAATA
CCTTGTACTTTAAAAGTCTTTTTTTTCTGAATTGAAATTCTTGGATCATC
ACTTTTGACGCTGTGTCCTGCCGTATTTTGTTGTTGATTTTTACATTGAT
TTTCTAGGTATAACTAATAGATTTATATTTTTAGAAACAAAATTTCTTAG
ATATTTT Coding sequence (CDS) from alignment at scaffold_94:455851..460207- >TCONS_00073550 ID=TCONS_00073550|Name=TCONS_00073550|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_94:455851..460207- (Clytia hemisphaerica)
CAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCTGTGCACC
TGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAGGAATTGT
ACCAATGGAATAGTCTAAGCGCGCTATCTTTGAACACGTTGGAAATGCAG
TTGAGCAAGAACTACACTGTCCGTTGTGGTAACTGGGAAGCGCAATCCCT
CTCGCGAAAACAGATCATGTATGCTGCAAAAGATGCCATCGTATCTTTAG
AAATCTTTTACGCTCTCGTTTTGCTACGTCGAGTTCGACGCCGTCAAGGG
CGTGACGTATTAGACGGGATGTTTGAATCTTCAGTCGATTTTCATAAAAT
GCTGCAAGGTTTTCAGGAGAGCTCCTCTTCATGTTTCTACTACTCTCATA
GTAAAGACACTCTTAATGATGTGGATGCCATTTTGCCGACGGATACACTG
AGAACGTCACCTTCTCAAAGTTTAACAGAACTTTCTCACTCCTTATGTCA
AGGGATAGTAGACATCAAACATAAACCGAAACTGGTGATGAATCACAATG
TGCAGAAGACAGCATCCAGAGCTTACTCCACAACTAAACAAACAACAACT
CAACTAGACAAAACATCTAAACGTTATAACCATCAATGTAGAGATAAACC
ATTGTATGAAAACTGCTTTCTGATTGGTCCAGATAAACAAGTACTGGCAA
CTGTCAATCGTACAAAAGCAGAATGGTATTTACACAAAAATATTGGAGTC
GTTGAAAAGGATGAACCATTCACTGTCCGGTTATTATTCGAGCCTTCCGG
AAAACCAAAACCGGACGCTGACTACTACACAACAGTCAAAGAAAACGTAT
GTACCGTGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACATCATTCCT
CATGATTATCGGAAATATTTTCCACAGCAGATGAAAGACCACATGTCACA
TGATGTCCTTTTGTTCTGTATAGATTGTCATCGTACTGCACAATACTTTG
ACGACCAAGTACGACAAGACCTTGCCACCAAGTATAAAGCTCCCCTCGGT
ACCAAACAAAATATGTTTAAAACGGACAACCCTCAGCTCGGGCGTGTGCG
ATCAGCCGCCAAAGCGCTATTAAAGAATTCTGCTAACATTCCAACAGCTA
GACGTGAAGAACTAGAAGCCATAATTTTAAACCACTTCAAGGTGAATTCG
GTTAATACACAATTACTTAAAGACACTATGGATATGGATATACGCGTTGA
GAACAACAAATTCTTAGGATTACATGGCGAGAGGGTCGTAAAAGGGCTGT
TAGAAGAGAATGATTTAATAGAATTCATTAAGATGTGGAGACAACGTTTC
TTGGATACAATGAAACCCAAATTTCTACCACCGCTTTGGTCTGTTGATCA
CAATCTACAGAAATTCAACGCCTCAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00073550-exon-scaffold_94-1575043694:460109..460207 | TCONS_00073550-exon-scaffold_94-1575043694:460109..460207 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1575043694:458894..459540 | TCONS_00073550-exon-scaffold_94-1575043694:458894..459540 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1575043694:457431..457668 | TCONS_00073550-exon-scaffold_94-1575043694:457431..457668 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1575043694:455851..456642 | TCONS_00073550-exon-scaffold_94-1575043694:455851..456642 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1510915933:460109..460207 | TCONS_00073550-exon-scaffold_94-1510915933:460109..460207 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1510915933:458894..459540 | TCONS_00073550-exon-scaffold_94-1510915933:458894..459540 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1510915933:457431..457668 | TCONS_00073550-exon-scaffold_94-1510915933:457431..457668 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1510915933:455851..456642 | TCONS_00073550-exon-scaffold_94-1510915933:455851..456642 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1491911889:460109..460207 | TCONS_00073550-exon-scaffold_94-1491911889:460109..460207 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1491911889:458894..459540 | TCONS_00073550-exon-scaffold_94-1491911889:458894..459540 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1491911889:457431..457668 | TCONS_00073550-exon-scaffold_94-1491911889:457431..457668 | Clytia hemisphaerica | exon |
| TCONS_00073550-exon-scaffold_94-1491911889:455851..456642 | TCONS_00073550-exon-scaffold_94-1491911889:455851..456642 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:455851..460207 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002562 | 3'-5'_exonuclease_dom |
| IPR012337 | RNaseH-like_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006139 | nucleobase-containing compound metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008408 | 3'-5' exonuclease activity |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006139 |
nucleobase-containing compound metabolic process |
| molecular_function |
GO:0008408 |
3'-5' exonuclease activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00073550 vs. Swiss-Prot (Human)
Match: EXD2 (Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2) HSP 1 Score: 262.307 bits (669), Expect = 3.739e-78 Identity = 133/331 (40.18%), Postives = 202/331 (61.03%), Query Frame = 2
Query: 497 CQGIVDIKHKPKLV--MNHNVQKTASRAYXXXXXXXXXXXXXXXRYNHQCRD-----------------KPLYENCFLIGPDKQVLATVNRTKAEWYLHKNIGVVEKDEPFTVRLLFEPSGKPKPDADYYTTVKENVCTVCGSTENFVKKNIIPHDYRKYFPQQMKDHMSHDVLLFCIDCHRTAQYFDDQVRQDLATKYKAPLGTKQNMFKTDNPQLGRVRSAAKALLKNSANIPTARREELEAIILNHFKVNSVNTQLLKDTMDMDIRVENNKFLGLHGERVVK-----GLLEENDLIEFIKMWRQRFLDTMKPKFLPPLWSVDHNLQKF 1417
CQG+VDI + K + + V A+ + + +++D NHQ RD PLY+NCFL PD Q L T +R KA+WYL K IG + +EPF V+L FEP+G+P+ DYY VKEN+C VCG +++++KN+IPH+YRK+FP +MKDH SHDVLL C CH + Y+D+ ++Q LA +++AP+G+++ + ++P+ +VRS A+ALL N+ ++PT R+EEL + + + V ++L++ ++ R+ N ++ HG +VV+ GL L++ WRQ FLD+M+PK LP WSVDHN QK
Sbjct: 284 CQGVVDIPFRSKGMSRLGEEVNGEATESQQKPRNKKSKMDGMVP-GNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRKAQWYLDKGIGELVSEEPFVVKLRFEPAGRPESPGDYYLMVKENLCVVCGKRDSYIRKNVIPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDPERRQVRSGARALL-NAESLPTQRKEELLQALREFYNTDVVTEEMLQEAASLETRISNENYVP-HGLKVVQCHSQGGL---RSLMQLESRWRQHFLDSMQPKHLPQQWSVDHNHQKL 608
The following BLAST results are available for this feature:
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