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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010051 ID=TCONS_00010051|Name=TCONS_00010051|organism=Clytia hemisphaerica|type=transcript|length=3754bpRun BLAST on NCBI protein sequence of TCONS_00010051-protein >TCONS_00010051-protein ID=TCONS_00010051-protein|Name=TCONS_00010051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=757bp QKLKKLYNSNGLLGCKVLVCKLLTSVCREDPNCPNEKVFFLSCLQKHVTRRun BLAST on NCBI transcript from alignment at sc0000102:1119..19649+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010051 ID=TCONS_00010051|Name=TCONS_00010051|organism=Clytia hemisphaerica|type=transcript|length=18531bp|location=Sequence derived from alignment at sc0000102:1119..19649+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:1119..19649+ >TCONS_00010051 ID=TCONS_00010051|Name=TCONS_00010051|organism=Clytia hemisphaerica|type=CDS|length=50028bp|location=Sequence derived from alignment at sc0000102:1119..19649+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010051 vs. Swiss-Prot (Human)
Match: PTPR2 (Receptor-type tyrosine-protein phosphatase N2 OS=Homo sapiens GN=PTPRN2 PE=1 SV=2) HSP 1 Score: 453.366 bits (1165), Expect = 2.719e-139 Identity = 241/544 (44.30%), Postives = 334/544 (61.40%), Query Frame = 1
Query: 724 APGREEVAVPVYTQ--------LDKKSTEDKSTQQLVIELANQAKKEEAGTLADILKRSFADSDSTFSLQHINDNKVTYQLVS--RELSADSVATKLNSDNKFVKDVEDQSGLRIVRASTTPNKNSSGSEPSVLEE-TERSVLKGHITIFXXXXXXXXXXXXXXXXXXXXIKRRNKEDGLFAFKKQEAVQDYQELCRTQMSVANARSDDEDEDNEQDKSNTMRHNWYD-----------------EQFPYNMDIGTGHVILDYMEDHLRNENRLNKEWEALCSYKADDAETTVGSDSKNTTKNRYRNVLPYDRTRVKLREVLNVFHCDYINANYITDVDPNHPDYIATQGPLDNTVADFWQMIWEQGVVVIVNLTKLSDMGLPQCHRYWPENGSEIFHIYEVHLISEHIWCDDYLVRSLYLKNLQTGETRTITQFHYLTWPDLSIPDSAKPLLEFRRKVNKCYRGQACPIIVHCNNGVGRTGTYILLDMVLNKMVKGAKEIDIAATLEHLRDQRPDMVKTKGQFEFSLTAMAEEVSAILSAAPK 2271
P +EE ++P Q L+ + +E+++ +V + + + EE L + + R S F+ + VT+++ + + ++ + V K DNK +E+ SGL+I++ P +E + + + +++ + L+ + + K GL +A YQELCR +M+ R D E + +++ + D E NMDI TGH+IL YMEDHL+N+NRL KEWEALC+Y+A+ + V +N KNR VL YD +RV L+ + H DYINA+ I D DP +P YIATQGPL TVADFWQM+WE G VVIV LT L++ G+ QC+ YWP+ GS ++HIYEV+L+SEHIWC+D+LVRS YLKNLQT ETRT+TQFH+L+W D +P S++ LL+FRRKVNKCYRG++CPIIVHC++G GR+GTY+L+DMVLNKM KGAKEIDIAATLEHLRDQRP MV+TK QFEF+LTA+AEEV+AIL A P+
Sbjct: 479 GPSKEEQSLPAGAQEALSDGLQLEVQPSEEEARGYIVTD-RDPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGPAVTFKVSANVQNVTTEDV-EKATVDNK--DKLEETSGLKILQTGVGSKSKLKFLPPQAEQEDSTKFIALTLVSLACILGVLLASGLIYCLRHSSQHRLKEKLSGLGGDPGADATAAYQELCRQRMAT---RPPDRPEGPHTSRISSVSSQFSDGPIPSPSARSSASSWSEEPVQSNMDISTGHMILSYMEDHLKNKNRLEKEWEALCAYQAEPNSSFVAQREENVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQGPLPATVADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPDEGSNLYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRSGTYVLIDMVLNKMAKGAKEIDIAATLEHLRDQRPGMVQTKEQFEFALTAVAEEVNAILKALPQ 1015 The following BLAST results are available for this feature:
BLAST of TCONS_00010051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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