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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015802 ID=TCONS_00015802|Name=TCONS_00015802|organism=Clytia hemisphaerica|type=transcript|length=832bp
AGATGTtatatttgcaaaaaaatagaaGTTTGTTGGATGTTTAGATGCGT
AGACGCTTGAAGAGTTGCTCAAAGTCTTTATCGTCACTTTCGTCATACTC
AACATTGGACGAAGATTTTCTCTTTCGTCCTTTTGAGACGTTTGGTTTAG
CATCGTTAAGTGTTTTATTGACATAGTCGGTTGGTGTGAAAAGCTTGTTG
ACTTTGGTTTCTCCTGAGCGGACATCTGATGAGATTGTCATCTTATTGGT
GAGCTGGTCTGCTAAATCTTTGAAGACTTTGTCATCTGTAGATTTGTAGA
CTGTCGATTCACCTATTTCGACACAAGGAAATGAACGTTTTTGAATGAGA
TCATTCGCGTCTCGGCGTTTTGCTTTGATAACAACACGAGCCTCAGTAAA
aggttttgatttgaaaacggCCTTCTTGTATGAAGCTTTCAGAACACGGT
GGtacaatttcaaattgatttgagAACGTCCAGTGTTCAACTTCTTTATG
TTTGAATCCTCCAATGCAAATGCCATTGCACGAGGATTTTTGGATTTTCC
GATCTGATGAAATTCATCTCGggattcaatttttgaatgcaaATCGACAA
CAGATTTGCGTTTCGCggtgaaaacttttgcacgAGTGATATCGACCTTT
GTCTCAGAAGCAATATTGAACAAAGATTTACTCGAAGCATtcgaattttc
accaaagactttcattttactcaaaatacacatttttgcAAGACTTTCTG
CGACTTGATTCGACagaagaaatatttgaaaataactttctgaattgaaa
gaaaacaattgacgtcaaatattttcacGATT Run BLAST on NCBI protein sequence of TCONS_00015802-protein >TCONS_00015802-protein ID=TCONS_00015802-protein|Name=TCONS_00015802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MCILSKMKVFGENSNASSKSLFNIASETKVDITRAKVFTAKRKSVVDLHS
KIESRDEFHQIGKSKNPRAMAFALEDSNIKKLNTGRSQINLKLYHRVLKA
SYKKAVFKSKPFTEARVVIKAKRRDANDLIQKRSFPCVEIGESTVYKSTD
DKVFKDLADQLTNKMTISSDVRSGETKVNKLFTPTDYVNKTLNDAKPNVS
KGRKRKSSSNVEYDESDDKDFEQLFKRLRI Run BLAST on NCBI transcript from alignment at sc0000216:407689..408520 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015802 ID=TCONS_00015802|Name=TCONS_00015802|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0000216:407689..408520 (Clytia hemisphaerica)
AATCgtgaaaatatttgacgtcaattgttttctttcaattcagaaagtta
ttttcaaatatttcttctGTCGAATCAAGTCGCAGAAAGTCTTgcaaaaa
tgtgtattttgagtaaaatgaaagtctttggtgaaaattcgaATGCTTCG
AGTAAATCTTTGTTCAATATTGCTTCTGAGACAAAGGTCGATATCACTcg
tgcaaaagttttcaccGCGAAACGCAAATCTGTTGTCGATttgcattcaa
aaattgaatccCGAGATGAATTTCATCAGATCGGAAAATCCAAAAATCCT
CGTGCAATGGCATTTGCATTGGAGGATTCAAACATAAAGAAGTTGAACAC
TGGACGTTctcaaatcaatttgaaattgtaCCACCGTGTTCTGAAAGCTT
CATACAAGAAGGccgttttcaaatcaaaacctTTTACTGAGGCTCGTGTT
GTTATCAAAGCAAAACGCCGAGACGCGAATGATCTCATTCAAAAACGTTC
ATTTCCTTGTGTCGAAATAGGTGAATCGACAGTCTACAAATCTACAGATG
ACAAAGTCTTCAAAGATTTAGCAGACCAGCTCACCAATAAGATGACAATC
TCATCAGATGTCCGCTCAGGAGAAACCAAAGTCAACAAGCTTTTCACACC
AACCGACTATGTCAATAAAACACTTAACGATGCTAAACCAAACGTCTCAA
AAGGACGAAAGAGAAAATCTTCGTCCAATGTTGAGTATGACGAAAGTGAC
GATAAAGACTTTGAGCAACTCTTCAAGCGTCTACGCATCTAAACATCCAA
CAAACttctatttttttgcaaatataACATCT Coding sequence (CDS) from alignment at sc0000216:407689..408520 >TCONS_00015802 ID=TCONS_00015802|Name=TCONS_00015802|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000216:407689..408520 (Clytia hemisphaerica)
atgtgtattttgagtaaaatgaaagtctttggtgaaaattcgaATGCTTC
GAGTAAATCTTTGTTCAATATTGCTTCTGAGACAAAGGTCGATATCACTc
gtgcaaaagttttcaccGCGAAACGCAAATCTGTTGTCGATttgcattca
aaaattgaatccCGAGATGAATTTCATCAGATCGGAAAATCCAAAAATCC
TCGTGCAATGGCATTTGCATTGGAGGATTCAAACATAAAGAAGTTGAACA
CTGGACGTTctcaaatcaatttgaaattgtaCCACCGTGTTCTGAAAGCT
TCATACAAGAAGGccgttttcaaatcaaaacctTTTACTGAGGCTCGTGT
TGTTATCAAAGCAAAACGCCGAGACGCGAATGATCTCATTCAAAAACGTT
CATTTCCTTGTGTCGAAATAGGTGAATCGACAGTCTACAAATCTACAGAT
GACAAAGTCTTCAAAGATTTAGCAGACCAGCTCACCAATAAGATGACAAT
CTCATCAGATGTCCGCTCAGGAGAAACCAAAGTCAACAAGCTTTTCACAC
CAACCGACTATGTCAATAAAACACTTAACGATGCTAAACCAAACGTCTCA
AAAGGACGAAAGAGAAAATCTTCGTCCAATGTTGAGTATGACGAAAGTGA
CGATAAAGACTTTGAGCAACTCTTCAAGCGTCTACGCATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015802-exon-sc0000216-1491911889:407689..408520 | TCONS_00015802-exon-sc0000216-1491911889:407689..408520 | Clytia hemisphaerica | exon |
| TCONS_00015802-exon-sc0000216-1510915933:407689..408520 | TCONS_00015802-exon-sc0000216-1510915933:407689..408520 | Clytia hemisphaerica | exon |
| TCONS_00015802-exon-sc0000216-1575043694:407689..408520 | TCONS_00015802-exon-sc0000216-1575043694:407689..408520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:407689..408520 . |
Blast
The following BLAST results are available for this feature:
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