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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016000 ID=TCONS_00016000|Name=TCONS_00016000|organism=Clytia hemisphaerica|type=transcript|length=3207bpRun BLAST on NCBI protein sequence of TCONS_00016000-protein >TCONS_00016000-protein ID=TCONS_00016000-protein|Name=TCONS_00016000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=822bp MRLTTIVTLVTCYATCMLLFSEQANGAIASVKTTAKKLSGSFFKIAQGARRun BLAST on NCBI transcript from alignment at sc0000224:92889..106003- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016000 ID=TCONS_00016000|Name=TCONS_00016000|organism=Clytia hemisphaerica|type=transcript|length=13115bp|location=Sequence derived from alignment at sc0000224:92889..106003- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000224:92889..106003- >TCONS_00016000 ID=TCONS_00016000|Name=TCONS_00016000|organism=Clytia hemisphaerica|type=CDS|length=32097bp|location=Sequence derived from alignment at sc0000224:92889..106003- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016000 vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 7.168e-24 Identity = 73/211 (34.60%), Postives = 109/211 (51.66%), Query Frame = 1
Query: 445 DLTFIIDRSGSVGRRNFDLSLRFIEEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSLINEVKKEQTNRVQCSGSGTRHDECGRRCRCSGGKLVE 1077
DL F++D S SVGR NF L FI +++ + + TRV + Y++D RTEF N + R+ ++ A+K+I Y GG T T ++ + ++GAR KV +TDG+S PA +LRN+G ++F LGI + EL IAS + N VF V NF + + NE+ + CSG + E SG ++VE
Sbjct: 140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQD--EVEIPARELRNVGVEVFSLGI-KAADAKELKQIASTPS--LNHVFNVANFDAIVDIQNEIISQ-----VCSGVDEQLGEL-----VSGEEVVE 335 HSP 2 Score: 95.5153 bits (236), Expect = 1.393e-19 Identity = 70/282 (24.82%), Postives = 135/282 (47.87%), Query Frame = 1
Query: 445 DLTFIIDRSGSVGRRNFDLSLRFIEEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSLINEVKKEQTNRVQCSGS---------GTRHDECGRRCRCSGGKLVECCRVRKDFPSMSIEEKERYVSAVKTVSTQQPYKAKYDALVKIHI---DNFNRGIHDRNQFLP 1254
D+ ++D S S+GR NF FI I+ + + P ++A Y+ D RTE++ N+H +++ +++AV + Y GG T T +L R + +G RP A+K+ +TDG+S + P+ +L++ G ++F +GI + V EL IA+ ++ + V +F L +++++ N V+ G R R V+ +V +P + +E YVS ++T + + K + + +V ++ D ++ + + LP
Sbjct: 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD--DVEAPSKKLKDEGVELFAIGIKNADEV-ELKMIATDPDDTH--AYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEY-YPVSGGKRQEFYVSRMETSTVLKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLP 1474 HSP 3 Score: 93.5893 bits (231), Expect = 4.552e-19 Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 1
Query: 445 DLTFIIDRSGSVGRRNFDLSLRFIEEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSLINEVKKEQTNRVQ 1005
D+ F++D S S+G NF F+E ++ + +SP+ +++ + Y+ D TEF E +I A+ Y GG T+T ++ R + G+R + KV+ +TDG+S+ PA++LRN +IF +G+ +VR SEL +IAS E VF V +F Q + E+ + R++
Sbjct: 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFR--DPAIKLRNSDVEIFAVGVKDAVR-SELEAIASP--PAETHVFTVEDFDAFQRISFELTQSICLRIE 621 HSP 4 Score: 86.6557 bits (213), Expect = 5.728e-17 Identity = 57/175 (32.57%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 445 DLTFIIDRSGSVGRRNFDLSLRFI-EEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSL 966
D+ F+ D S S+G NF+ ++FI + F +SP+ +V+ + Y+ +V++EF+ N++ ++ + A++ IRY GG T T +L + + SG R + KV+ +TDGRS A AL ++ G +FV+G+ V +EL +IASK + E VF V +F + +
Sbjct: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKA--ALVIQQSGFSVFVVGVA-DVDYNELANIASKPS--ERHVFIVDDFESFEKI 2492 The following BLAST results are available for this feature:
BLAST of TCONS_00016000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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