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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016624 ID=TCONS_00016624|Name=TCONS_00016624|organism=Clytia hemisphaerica|type=transcript|length=1661bp
ATCAATTAAGAAAACTGTGAAAGTAGAATCATAAGCAATaagattttgca
aaaataatcaaattttatcaaaagaaccttaaaacaaaaagacaTATTAT
TGAGCTACGTAAATAACTGttaatgttttaatttcttaataatctttttg
aatcAATGGTGACATGAAATTGCATAGCAAACAGGCTACTGTCCAGATTT
GGTTTATTGAACCATGTAAGGCTAGTGGTATCTCGTTTCTAATTTGCCGA
AATTTTTTAACACGTTGAATAGCTCGCTCTACATGTATTCTAACTGAAGC
TATTGTCTGGCTTTCTTTAACTTCTTCAGTTGTAAACTGTGTCCTTCCCT
CTAGAAAGGCAGGGATATTGAGTTCAACCTTCAAAGGATCCAAAAGCTCT
TTAATTGTAAAACCACGATCAGCCATCAAGGAATCTCCTTCttcccaaaa
acttttattcaATAATCCTGATCGATCAACGATTTCTTTATCAGAGATTG
ACCCTTCATAAAGTTGACTGACAAAAGTAATTGATCCTGAAGGGGCGATA
CCAATCAAACCTTTATAAGTTACGTGACTTTTATATTGAGAGTACATGTT
ACTTTGAGTTGCCAGTGAAGATGGTCTTTGGCAAAATAATTCAGTACAGT
CTACAATACATCTTGTTTTGGGATAAAGTTCTTTGAACGATATTGGCATA
GTTTCCTTTATCTGTAGCTTAGAAGGCCATATTGGTATTGAACCAAGGGT
GAAATACATCAGGTTGATCCAAGTGATTATGTACCTTGATGTTGAGGGTA
CTGACAAGTTAAATAACCAAGAACAATGTTTCAGATTAAATCCTCCTTTC
AGCCATGACAGTACAAGTAAGAGCTGATCTTCTGCAGACAATTTGACCTT
TGGACCTGGTTTCTTGTTACCTGGGGGCAAAGTTATGTCGTCAGCTCCTT
TCAATTTAGAATCAtagaatttgatattttcacaGTTTTCTTTGACATCC
AGGAGTGATAGCAACTCTgtaaaattttccaccgttaGCCCTGTTTCCGA
TTTGAAGAATTTCTTATCTTTTGAAAGGTTATCataattgtaaaaatttt
tctttagttcttcTACTTCAAgttttaaagataaattttctTGTTCAAGT
TCCTCAATTCTTTGTTTCAGTTCATTGATCTCGTTTACTTCATTGTTTAT
ATCATTGACGTTTATATCATTGACGTTTCTATTCTCTGGCTCCTTTTGAA
TCGTATTACAAGCAGGATCGTCGAAAATTTTGGATAAACGTTTTTTAGGT
GATTTTCTTGATGTTACTTTTTTcggctttttaaaagaaaacactCTTGG
TATTGCTCCTTTCCTTAAAACCTTTTTATGTGTTCCAAGGGTGACTTTAA
TGTCCTctgctttaaaatgaaattcacAGATAACTGTTGTAGATGTGATT
TTGAACTTATCTTTTCCTCCCTTTCGTCGATACCGGTAAATGATTCGTTT
CCATTCTTGATTTCGTTTAGGGTTAGTTGGGATCTTGAAAAATCCAATTT
CAGTTTTGGTCATGTCACTGTTATAAAAGCTGCTCTTGCATTCGGGTATA
CAACAATATGCACCTTTTCctcctttcaaaacttttccaggTCGCGTAGC
AGACGATCCAG Run BLAST on NCBI protein sequence of TCONS_00016624-protein >TCONS_00016624-protein ID=TCONS_00016624-protein|Name=TCONS_00016624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp
GSSATRPGKVLKGGKGAYCCIPECKSSFYNSDMTKTEIGFFKIPTNPKRN
QEWKRIIYRYRRKGGKDKFKITSTTVICEFHFKAEDIKVTLGTHKKVLRK
GAIPRVFSFKKPKKVTSRKSPKKRLSKIFDDPACNTIQKEPENRNVNDIN
VNDINNEVNEINELKQRIEELEQENLSLKLEVEELKKNFYNYDNLSKDKK
FFKSETGLTVENFTELLSLLDVKENCENIKFYDSKLKGADDITLPPGNKK
PGPKVKLSAEDQLLLVLSWLKGGFNLKHCSWLFNLSVPSTSRYIITWINL
MYFTLGSIPIWPSKLQIKETMPISFKELYPKTRCIVDCTELFCQRPSSLA
TQSNMYSQYKSHVTYKGLIGIAPSGSITFVSQLYEGSISDKEIVDRSGLL
NKSFWEEGDSLMADRGFTIKELLDPLKVELNIPAFLEGRTQFTTEEVKES
QTIASVRIHVERAIQRVKKFRQIRNEIPLALHGSINQIWTVACLLCNFMS
PLIQKDY Run BLAST on NCBI transcript from alignment at sc0000243:29169..30829 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016624 ID=TCONS_00016624|Name=TCONS_00016624|organism=Clytia hemisphaerica|type=transcript|length=1661bp|location=Sequence derived from alignment at sc0000243:29169..30829 (Clytia hemisphaerica)
CTGGATCGTCTGCTACGCGAcctggaaaagttttgaaaggagGAAAAGGT
GCATATTGTTGTATACCCGAATGCAAGAGCAGCTTTTATAACAGTGACAT
GACCAAAACTGAAATTGGATTTTTCAAGATCCCAACTAACCCTAAACGAA
ATCAAGAATGGAAACGAATCATTTACCGGTATCGACGAAAGGGAGGAAAA
GATAAGTTCAAAATCACATCTACAACAGTTATCTgtgaatttcattttaa
agcagAGGACATTAAAGTCACCCTTGGAACACATAAAAAGGTTTTAAGGA
AAGGAGCAATACCAAGagtgttttcttttaaaaagccgAAAAAAGTAACA
TCAAGAAAATCACCTAAAAAACGTTTATCCAAAATTTTCGACGATCCTGC
TTGTAATACGATTCAAAAGGAGCCAGAGAATAGAAACGTCAATGATATAA
ACGTCAATGATATAAACAATGAAGTAAACGAGATCAATGAACTGAAACAA
AGAATTGAGGAACTTGAACAagaaaatttatctttaaaacTTGAAGTAga
agaactaaagaaaaatttttacaattatGATAACCTTTCAAAAGATAAGA
AATTCTTCAAATCGGAAACAGGGCtaacggtggaaaattttacAGAGTTG
CTATCACTCCTGGATGTCAAAGAAAACtgtgaaaatatcaaattctaTGA
TTCTAAATTGAAAGGAGCTGACGACATAACTTTGCCCCCAGGTAACAAGA
AACCAGGTCCAAAGGTCAAATTGTCTGCAGAAGATCAGCTCTTACTTGTA
CTGTCATGGCTGAAAGGAGGATTTAATCTGAAACATTGTTCTTGGTTATT
TAACTTGTCAGTACCCTCAACATCAAGGTACATAATCACTTGGATCAACC
TGATGTATTTCACCCTTGGTTCAATACCAATATGGCCTTCTAAGCTACAG
ATAAAGGAAACTATGCCAATATCGTTCAAAGAACTTTATCCCAAAACAAG
ATGTATTGTAGACTGTACTGAATTATTTTGCCAAAGACCATCTTCACTGG
CAACTCAAAGTAACATGTACTCTCAATATAAAAGTCACGTAACTTATAAA
GGTTTGATTGGTATCGCCCCTTCAGGATCAATTACTTTTGTCAGTCAACT
TTATGAAGGGTCAATCTCTGATAAAGAAATCGTTGATCGATCAGGATTAT
tgaataaaagtttttgggaaGAAGGAGATTCCTTGATGGCTGATCGTGGT
TTTACAATTAAAGAGCTTTTGGATCCTTTGAAGGTTGAACTCAATATCCC
TGCCTTTCTAGAGGGAAGGACACAGTTTACAACTGAAGAAGTTAAAGAAA
GCCAGACAATAGCTTCAGTTAGAATACATGTAGAGCGAGCTATTCAACGT
GTTAAAAAATTTCGGCAAATTAGAAACGAGATACCACTAGCCTTACATGG
TTCAATAAACCAAATCTGGACAGTAGCCTGTTTGCTATGCAATTTCATGT
CACCATTgattcaaaaagattattaagaaattaaaacattaaCAGTTATT
TACGTAGCTCAATAATAtgtctttttgttttaaggttcttttgataaaat
ttgattatttttgcaaaatcttATTGCTTATGATTCTACTTTCACAGTTT
TCTTAATTGAT Coding sequence (CDS) from alignment at sc0000243:29169..30829 >TCONS_00016624 ID=TCONS_00016624|Name=TCONS_00016624|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000243:29169..30829 (Clytia hemisphaerica)
GGATCGTCTGCTACGCGAcctggaaaagttttgaaaggagGAAAAGGTGC
ATATTGTTGTATACCCGAATGCAAGAGCAGCTTTTATAACAGTGACATGA
CCAAAACTGAAATTGGATTTTTCAAGATCCCAACTAACCCTAAACGAAAT
CAAGAATGGAAACGAATCATTTACCGGTATCGACGAAAGGGAGGAAAAGA
TAAGTTCAAAATCACATCTACAACAGTTATCTgtgaatttcattttaaag
cagAGGACATTAAAGTCACCCTTGGAACACATAAAAAGGTTTTAAGGAAA
GGAGCAATACCAAGagtgttttcttttaaaaagccgAAAAAAGTAACATC
AAGAAAATCACCTAAAAAACGTTTATCCAAAATTTTCGACGATCCTGCTT
GTAATACGATTCAAAAGGAGCCAGAGAATAGAAACGTCAATGATATAAAC
GTCAATGATATAAACAATGAAGTAAACGAGATCAATGAACTGAAACAAAG
AATTGAGGAACTTGAACAagaaaatttatctttaaaacTTGAAGTAgaag
aactaaagaaaaatttttacaattatGATAACCTTTCAAAAGATAAGAAA
TTCTTCAAATCGGAAACAGGGCtaacggtggaaaattttacAGAGTTGCT
ATCACTCCTGGATGTCAAAGAAAACtgtgaaaatatcaaattctaTGATT
CTAAATTGAAAGGAGCTGACGACATAACTTTGCCCCCAGGTAACAAGAAA
CCAGGTCCAAAGGTCAAATTGTCTGCAGAAGATCAGCTCTTACTTGTACT
GTCATGGCTGAAAGGAGGATTTAATCTGAAACATTGTTCTTGGTTATTTA
ACTTGTCAGTACCCTCAACATCAAGGTACATAATCACTTGGATCAACCTG
ATGTATTTCACCCTTGGTTCAATACCAATATGGCCTTCTAAGCTACAGAT
AAAGGAAACTATGCCAATATCGTTCAAAGAACTTTATCCCAAAACAAGAT
GTATTGTAGACTGTACTGAATTATTTTGCCAAAGACCATCTTCACTGGCA
ACTCAAAGTAACATGTACTCTCAATATAAAAGTCACGTAACTTATAAAGG
TTTGATTGGTATCGCCCCTTCAGGATCAATTACTTTTGTCAGTCAACTTT
ATGAAGGGTCAATCTCTGATAAAGAAATCGTTGATCGATCAGGATTATtg
aataaaagtttttgggaaGAAGGAGATTCCTTGATGGCTGATCGTGGTTT
TACAATTAAAGAGCTTTTGGATCCTTTGAAGGTTGAACTCAATATCCCTG
CCTTTCTAGAGGGAAGGACACAGTTTACAACTGAAGAAGTTAAAGAAAGC
CAGACAATAGCTTCAGTTAGAATACATGTAGAGCGAGCTATTCAACGTGT
TAAAAAATTTCGGCAAATTAGAAACGAGATACCACTAGCCTTACATGGTT
CAATAAACCAAATCTGGACAGTAGCCTGTTTGCTATGCAATTTCATGTCA
CCATTgattcaaaaagattattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016624-exon-sc0000243-1491911889:29169..30829 | TCONS_00016624-exon-sc0000243-1491911889:29169..30829 | Clytia hemisphaerica | exon |
| TCONS_00016624-exon-sc0000243-1510915933:29169..30829 | TCONS_00016624-exon-sc0000243-1510915933:29169..30829 | Clytia hemisphaerica | exon |
| TCONS_00016624-exon-sc0000243-1575043694:29169..30829 | TCONS_00016624-exon-sc0000243-1575043694:29169..30829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:29169..30829 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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