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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017310 ID=TCONS_00017310|Name=TCONS_00017310|organism=Clytia hemisphaerica|type=transcript|length=2621bpRun BLAST on NCBI protein sequence of TCONS_00017310-protein >TCONS_00017310-protein ID=TCONS_00017310-protein|Name=TCONS_00017310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp MDRSTCSICADYLSISDCTACPCGHTFHYNCIIRWKKESSTCPQCRVRFRRun BLAST on NCBI transcript from alignment at sc0000264:267930..274260- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017310 ID=TCONS_00017310|Name=TCONS_00017310|organism=Clytia hemisphaerica|type=transcript|length=6331bp|location=Sequence derived from alignment at sc0000264:267930..274260- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000264:267930..274260- >TCONS_00017310 ID=TCONS_00017310|Name=TCONS_00017310|organism=Clytia hemisphaerica|type=CDS|length=16560bp|location=Sequence derived from alignment at sc0000264:267930..274260- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017310 vs. Swiss-Prot (Human)
Match: TRAIP (E3 ubiquitin-protein ligase TRAIP OS=Homo sapiens GN=TRAIP PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.846e-27 Identity = 112/473 (23.68%), Postives = 219/473 (46.30%), Query Frame = 3
Query: 90 RSTCSICADYLSIS-DCTACPCGHTFHYNCIIRW--KKESSTCPQCRVRF--REPI-KLFFEQNANQTIDECDASQLKNEIRDLKCTIQQKDVSMNTIKEQSLSMQKDLNHKKEEVVSLGTLLRNCQGTNDALKRQLSYLEKYKTEAQRARAKAASVENELINFKSISELVKGERHAVEAMVKNYSDTPDAVNVVST-------SYVXXXXXXXXXXXXXXXXXXXXXTYRRQAESASTEVFESQQKVDTLTKDLKHLNEINKGLQTKLKKLEQAFSSPSPRSSAIKRFMMESPAPMD----LKRQCLTANSNIAEI-------AEEQTNNDGSFILFDGPTSDDVLSTTPPVV-------DTLNISDDNSMEDEDKELIDEFGLRCVGTTSMCKRDPLXXXXXXXXXXXXXXFSVKSQKSKLERTASSDFPHLKKGFNGMGGQSKVLYIPKKTSGFKKPAPIKTETTRKLKI 1415
R+ C+IC+D+ S D A CGHTFH C+I+W S TCPQCR++ R I KLFF+ A + + DA LKNE+ +++ + QKD + +++ L + VVSL L + LK+Q+ YLE+ + E ++A+ +A + +++ + I L++ +R VE M+++ AV ++ Y LK+ + K+ + + R + ++ +E+ +++ ++ + KDL+ ++ L+ KL L++ + P S + R ++ESPAP++ L+R + ++ A ++ G + S + P + L++ + + D+EL+ F + V + ++ P ++ + E + S D ++ GF+G+GG++K +I + +P P+K +T K ++
Sbjct: 4 RALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIINKLFFDL-AQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVSLQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVYSELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVEVNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGPRKESQLSLGGQSCAGEPDEELVGAFPI-FVRNAILGQKQP--------------------KRPRSESSCSKDV--VRTGFDGLGGRTK--FIQPTDTVMIRPLPVKPKTKVKQRV 450 The following BLAST results are available for this feature:
BLAST of TCONS_00017310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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