TCONS_00020053 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020053
Unique Name	TCONS_00020053
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1349

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000348:244301..249341+

transcript sequence

>TCONS_00020053 ID=TCONS_00020053|Name=TCONS_00020053|organism=Clytia hemisphaerica|type=transcript|length=1349bp
taggaattctacaagtctgagccttcatatgcttataagcttataagcgt
tatgctttataaaaaaaaacatgtaactttTCATTTGAAGGTCAAGGCCC
ACAGTTATTGTTGGACAAGCTATGTTTGTGCTCAAAAACTAaagCAGTCA
AATCATCGTCTGATTGGATCACTCTCAATGTTGGTGGCAAGCTTTTCACT
ACCACAAGaaaCACTTTGACACGCTATCCGGACACGATGTTAGCAAGAAT
GTTCAGCATATCAGAAACGTGGAAGAGTGCTGTAGACGCGAATGGAGCTT
ATCTAATCGATCGAAGTCCAGAATATTTTGAACCCATCCTCAATTTTCTT
CGGCAAGGAATTCTCATAATAAACGAAGGAGTAAATCAAAGGGGTGTTTT
AGAAGAAGCTCGGTTCTTTGGATTGATTGAAATCGTCAATGAGTTGGAAT
CTGAGTTGCAAACCATTGAACGACAGAAGCAATCTGTTACACGAAGTGAA
TTTATGAGACTTTTAATGACAACTTCGAATGTTGATAAACTTCGATGTCA
AGGTGTTGACTTGGCCGGAGCTGATTTATCTTACTTAGATTTGAGCTCAA
TCAATTTCAAACATGCCAACTTGTCAGGAGCCAATTTAAAAGGTGCTTCT
TTGGGTGGATGTCAATTCAATTTGGCTGATCTTTCGAATGCCTGTCTTGA
TGATGCCACTTTGGAAGGGGTTCAGATGAAACGAGTAAACTTAGAAAGCG
CATCGCTCAAGAATTGCAAATTTGAAGCTACGGGTACTAAGAACCAAAAG
GCGAATTTAGAAGGTGCAAATTTGAAAGAAGCCTCATTGGAAGGAAGTCA
AATGAGCAATGCGTGTTTACGGTTAGCTGTCTTAAAAGAAGCCAATATGC
GAAACTGTGTATTGAGAGGTGCTACTTTGGCTGGAGCGGATCTAGAAAAT
TGTGATTTAACGGGAGCGGACTTGGAAGGAGCCAACCTGAGAGGAACGAA
CGTAGTGGGGACTATATTTTTAGATATTGTGGCGCCTCTTCATATGGTCC
AGTTCGAAGGTCCTCAGTCCTGAACATGACGCGATACGGAGGAAATTTCT
TACCGAACGGACACATTTTCCAGCAAATGAACTAAATGTAttttaaattt
ctattgaaaataCTCCTTATCTCGAAGGCAGTTTCGTAAGTAAAGACAAG
ATTTTCCGTATCTTTAGAAACAAACCAAATCTCATGTCGGTTATCCCGTG
AGAAATCCCGGAAAAGTCGAGAGAATATTTCGGGAAATGAAACCTTATGC
AAAACGACAGTAAGCTTTCAATAGAAAACAACTTTATCTCGTATATTTN

Run BLAST on NCBI

transcript from alignment at sc0000348:244301..249341+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020053 ID=TCONS_00020053|Name=TCONS_00020053|organism=Clytia hemisphaerica|type=transcript|length=5041bp|location=Sequence derived from alignment at sc0000348:244301..249341+ (Clytia hemisphaerica)
taggaattctacaagtctgagccttcatatgcttataagcttataagcgt
tatgctttataaaaaaaaacatgtaactttTCATTTGAAGGTCAAGGCCC
ACAGTTATTGTTGGACAAGCTATGTTTGTGCTCAAAAACTAaaggtaaat
aaattttgtaggaCCCAACATGTTGAacttccagaaaaaattaattctaa
GAATATGTAAGAATGTGAATTGGTCTGGAAGAAGTACTTGTAATTCATAA
gaagaattttaaaagaaattttgatcATTATTTTCATTCTCGAATTCTTT
TAGCAGTCAAATCATCGTCTGATTGGATCACTCTCAATGTTGGTGGCAAG
CTTTTCACTACCACAAGGTAGAAAGTTTATCGCTTTCTTTTGGATTCTAA
AGTattgctcaagttttttcccTACAAGATAAGCACtgcatttttggaaa
agctttttttttgatacaattttaaTACTTTCCTTTATACTTTACTTTTA
TATTTATTCATATATTTACGACGTATGGCattcttcttttttagaaaCAC
TTTGACACGCTATCCGGACACGATGTTAGCAAGAATGTTCAGCATATCAG
GTAATTTATTGTTAtatttattcgggtctgtaaattttcaaacgaagcca
agaaggaagacaaaatggcgccaggtctcttgagaagtaacaaagttacc
ttcttcagtacctttggaaaaaaggctatgtggctgaagttcgaaaggaa
tcttaacttttattacatggaatcattaacaagatgttgtaatagttatt
tcAACATGAAAACagttttcagatttcaaaagtttaggcaaaaagaggta
ccccataatctagcccaattggctaccccattggctaccctgctttttag
accaacccgatCGTGAGTGAGGTGAATGGTGTGGCGGCCTTGTCATACAG
TGTCACGCTTGAATACATATCTAATCCAATAAACTTCAGCTCTGTTCAGC
TGCACGTTCAGTGCAgcaaaatcagcggaaaataacccatcatcattttt
ttattaccgaaattcaaaatgaattatTGCAAAGAAATGCATACTTTTTC
TCCTATAGAAACGTGGAAGAGTGCTGTAGACGCGAATGGAGCTTATCTAA
TCGATCGAAGTCCAGAATATTTTGAACCCATCCTCAATTTTCTTCGGCAA
GGAATTCTCATAATAAACGAAGGAGTAAATCAAAGGGGTGTTTTAGAAGA
AGCTCGGTTCTTTGGATTGATTGAAATCGTCAATGAGTTGGAATCTGAGT
TGCAAACCATTGAACGACAGAAGCAATCTGTTACACGAAGTGAATTTATG
AGACTTTTAATGACAACTTCGAATGTTGATAAACTTCGATGTCAAGGTGT
TGACTTGGCCGGAGCTGATTTATCTTACTTAGATTTGAGCTCAATCAATT
TCAAACATGCCAACTTGTCAGGAGCCAATTTAAAAGGTGCTTCTTTGGGT
GGATGTCAATTCAATTTGGCTGATCTTTCGAATGCCTGTCTTGATGTAAG
TTTAGTCAGTCAGTCATTCACATGAAATTACCTATTCAGTTGGTAAGAAT
TATATAACAAACAGCCTCTGTACACCACAAACGTTACATCAACCAATATT
ATTAAAATTATCGTGCTTGTACACCACACGCTACTCGTTGTTTTGTTGTC
GCAAAAAAAGAGCGAAGCAAGtgactattattattattagtggtcatcca
tatagtacgtacgcaaaatttttcaaatattcgaTACCCCCTCCcacctt
gtacgcagagaacaatataaatgacgtcatttaaacaatagatgtacgct
tttgctaagcccccctctccccccttcactgcgtacgtactatgtggatg
gcCCCTTATCGTGTTTGTTAGTAATTGGAATATTGAGTTTCGAGTTCGAT
TTCTAAGCTTTTTAAAGGCTCTCCTGTTTTGGTTCTAGGATGCCACTTTG
GAAGGGGTTCAGATGAAACGAGTGAACTTAGAAAGCGCGTCGCTCAAGAA
TTGCAAATTTGAAGCTACGGGTACCAAGAACCAAAAGGCGAATTTAGAAG
GTAACAATTTGTTTAATGAATATATCATCCTTTTTATTGCTCTCGATACG
AAATCCTATTTTTCTTAGTCCACGTCAAGTTGATTAGCGGAACAGCcaaa
tttttattctaattaGTAAAAGGAATTGCCCGTAggcaaatattttcaaa
aattaacgaTATTCAAAAGTCAAATTGGTACGATTTAGGGGACCCTGTGC
AAAGTTCCTTAGTCGAATCCACAAGAAAATTCTATCGGTTTCCATCAACT
TCGATCATACTTAGAGTGACGTCATTTCCTTCCATTGTTCTTTCATCTCA
ATGATCAGGTGCAAATTTGAAAGAAGCCTCACTGGAAGGAAGTCAAATGA
GCAATGCGTGTTTACGGTTAGCTGTCTTAAAAGAAGCCAATATGCGAAAC
TGTGTATTGAGAGGTGCTACTTTGGCTGGAGCGGATCTAGAAGTAGGACA
TTGCTGTACATATAATACAATCTATAtctacaatcaaagtcataattttt
gagaaaaaaaggaaatcctcacgaaatcttacaaccacaaacgatttggt
agtgctctaaattaggttggaagggtagagttttaacaccttagaatctg
aggatccaGAAGTCCAAGAAtagtccaatagggctcagaatatagcctga
ttaaccaaaattctcaatttattttgaccgagattgtagAACAGGAACAT
GGTATCTTATATCCTTAGTGTCgttagaaaaatctttttggacctaccat
tagattttttctgacttttggcACAAAGTTGCAAATAGCAATAGCCGACA
TATAACAGAGCacgattttcaataaaatcttttgtcaaatttttccgaaa
aaaatatttttggttaaaATGCTGGAAATGACCGAGTTTTCCTATTTTGT
GTACAAGAACAGTCATAGTAATAGCCGGCGTAATCTAATAGTTAACAAAA
TGCACACCTTTAAATGAGACCATGACTTGTAGTATTAgattttatgataa
aaataataGTTTTGTATAAATCGTTTTTCTTTAGAATTGTGATTTAACGG
GAGCGGACTTGGAAGGAGCCAACCTGAGAGGAACGAACGTAGTGGGGACT
ATATTTTTAGATATTGTGGCGCCTCTTCATATGGTCCAGTTCGAAGGTCC
TCAGTCCTGAACATGACGCGATACGGAGGAAATTTCTTACCGAACGGACA
CATTTTCCAGCAAATGAACTAAATgtgttttaaatttctattgaaaNTGT
GGATGGCCCCTTATCGTGTTTGTTAGTAATTGGAATATTGAGTTCCGAGT
TCGAtttctaatctttttaaagGCTCTCCTGTTTTGGTTCTAGGATGCCA
CTTTGGAAGGGGTTCAGATGAAACGAGTAAACTTAGAAAGCGCATCGCTC
AAGAATTGCAAATTTGAAGCTACGGGTACTAAGAACCAAAAGGCGAATTT
AGAAGGTAACAATTTGTTTAATGAATATATCATCCTTTTTATTGCTCTCG
ATACGAAATCCTATTTTTCTTAGTCCACATCAAGTTGATTAGCTGAACAG
CCaaattttttattctaattAGTAAAATGAATTACTCGTTGgcaaatatt
tccaaaaattaacGATATCAAAAAGTCAAATTGCTACAATTTGGTGGACC
CTGTGCAACGAATTTTACAACAACAAACTCCTTAGGGgccattcaaaaaa
attgaatggcCCCTTAGTCGAATCCACAAGAAAATTCTATCGGTTTCCAT
CAACTTCGATCATACTTAGAATGACGTCATTTCCTTCCATTGTTCTTTCA
TCTCAATGATCAGGTGCAAATTTGAAAGAAGCCTCATTGGAAGGAAGTCA
AATGAGCAATGCGTGTTTACGGTTAGCTGTCTTAAAAGAAGCCAATATGC
GAAACTGTGTATTGAGAGGTGCTACTTTGGCTGGAGCGGATCTAGAAGTA
GGACATTGCTGTACATATAATACAATCTATAtctacaatcaaagtcataa
tttttgagaaaaaaaggaaatcctcacgaaatcttacaaccacaaacgat
ttggtagtgctctaaattaggttggaagggtagagttttaacaccttaga
atctgaggatccaGAAGTCCAAGAAtagtccaatagggctcagaatatag
cctgattaaccaaaattctcaatttattttgaccgagattgtagAACAGG
AACATGGTATCTTTTATCCTTAGTgtcgtttgaaaaatctttttggacct
accattagattttttctgacttttggcACAAAGTTGCAAATAGCAATAGC
CGACATATAACAGAGCacgattttcaataaaatcttttgtcaaatttttc
cgaaaaaaatatttttggttaaaATGCTGGAAATGACCGAGTTTTCCTAT
TTTGTGTACAAGAACAGTCATAGTAATAGCCGGCGTAATCTAATAGTTAA
CAAAATGCACACCTTTAAATGAGACCATGACTTGTAGTATTAgattttat
gataaaaataataGTTTTGTATAAATCGTTTTTCTTTAGAATTGTGATTT
AACGGGAGCGGACTTGGAAGGAGCCAACCTGAGAGGAACGAACGTAGTGG
GGACTATATTTTTAGATATTGTGGCGCCTCTTCATATGGTCCAGTTCGAA
GGTCCTCAGTCCTGAACATGACGCGATACGGAGGAAATTTCTTACCGAAC
GGACACATTTTCCAGCAAATGAACTAAATGTAttttaaatttctattgaa
aataCTCCTTATCTCGAAGGCAGTTTCGTAAGTAAAGACAAGATTTTCCG
TATCTTTAGAAACAAACCAAATCTCATGTCGGTTATCCCGTGAGAAATCC
CGGAAAAGTCGAGAGAATATTTCGGGAAATGAAACCTTATGCAAAACGAC
AGTAAGCTTTCAATAGAAAACAACTTTATCTCGTATATTTN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011270	XLOC_011270	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000348	supercontig	sc0000348:244301..249341 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.74746	8.93431	5.43312	5.96107	12.4855	10.3569	17.0086	16.7183	13.5838	17.4503	32.0079	8.156	9.69311	10.7336	7.94776	10.6197	12.9292	9.39649	11.3356	11.2742	11.6186	7.33137	12.9539	20.519	13.231	15.5149	19.097	14.0744	12.2904	11.827

Blast

[Close]

BLAST of TCONS_00020053 vs. Swiss-Prot (Human)
Match: KCTD9 (BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 8.824e-105
Identity = 167/301 (55.48%), Postives = 208/301 (69.10%), Query Frame = 3

Query:  159 SDWITLNVGGKLFTTTRNTLT-RYPDTMLARMFSISETWKSAVDANGAYLIDRSPEYFEPILNFLRQGILIINEGVNQRGVLEEARFFGLIEIVNELESELQTIE--RQKQSVTRSEFMRLLMTTSNVDKLRCQGVDLAGADLSYLDLSSINFKHANLSGANLKGASLGGCQFNLADLSNACLDDATLEGVQMKRVNLESASLKNCKFEATGTKNQKANLEGANLKEASLEGSQMSNACLRLAVLKEANMRNCVLRGATLAGADLENCDLTGADLEGANLRGTNVVGTIFLDIVAPLHMVQ 1052
            +DW+TLNVGG+ FTTTR+TL  + PD+MLA MF     W +  D  GA+LIDRSPEYFEPILN+LR G LI+N+G+N  GVLEEARFFG+  ++  LE  ++  +       ++R EF+R L+ T    +LRCQG++ +GADLS LDL  INFK ANLS  NL  A+L       ADLS + LD A L+GV+M   N E ASLK C FE       KANLEGANLK   +EGSQM+   LR+A LK A ++NC LRGATLAG DLENCDL+G DL+ ANLRG+NV G IF +++ PLHM Q
Sbjct:   88 TDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFE--DPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQ 386

The following BLAST results are available for this feature:

BLAST of TCONS_00020053 vs. Swiss-Prot (Human)

BLAST of TCONS_00020053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KCTD9	8.824e-105	55.48	BTB/POZ domain-containing protein KCTD9 OS=Homo sa...	[more]

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TCONS_00020053 (transcript) - C. hemisphaerica