TCONS_00020165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020165
Unique NameTCONS_00020165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020165 ID=TCONS_00020165|Name=TCONS_00020165|organism=Clytia hemisphaerica|type=transcript|length=1130bp
GAAAAAGAAAACTTATCTGGCCGGGCTGTACAATTTAAATTTTGCCTTCG
TCCTATGAGTGGAAAAATGACATACAATAGACTACCACttacttcgaata
accgggagttaACTGAAACCTCTTCTCCCATCGAAGAATTAAGGTATTTT
CGGTTTATGTTCAGATTAAACACTGCTAAGGACAAATTGAGGACATTGAT
GGATGGAAATTAGTCTTACAGAATAACATATATCATTATATTTATCTAAA
AAGCGAAATTATAGAAAGCCAAAGTTCTAAAAACACTTGACtttcgaaaa
tttcaaatatttggggGTTCAAATAACGGGGTGTCTACTGCAATTCTAAC
CCTTGCGAGACTCGTGTAAGCGCCTCGAATTGATTTTAgtttacaaattt
tctttttactcaAAACACTacgaaaaaggtttttttcttttaaccaGGGA
ATTTCTCTTTCCCCGTCAAACCAAGTCTCTCGTTTCTTTCATGGTGCTGA
GCGAACATGGCTACCAAATCAACCGCACTGATCACAGCGCGCGGTTCACG
CGGTCGAATACGTAGATGGACTTTAACTGGCATTTTAGCTTTGACTTGTC
GAAAAGCTTCTCTTGCTAAAGAGTCATTTGCACAATTATACTCGAACAAT
ACTTGTCCAGCAATGGCTTTTGCAGCCCAATAGTTTAATTTTCCTTTGCC
TTTTCCCATACGTGTTCCAACAGGCTTTTTAGTGAAGGGCGTTTCGCTGA
CTGGTTTGGTCACCTCTCTGGTTTGGGCCTTCCGTACAATGCTCACCCGC
CCGGCTTCGATGGCGGATTCTTTAATATACCCGGTAGTGAGGGCGTAAAT
GCCATAACTCATGTTATCTTGGTAGTCGCAATGGACGAACTCTTTTAGTT
TCGGTTGTAAGTTAATCGATCGAGTCTGTGTAACGGTGGGTAGCATAGTT
CGCTGACTGTTTAAAGTCACGTTTTGAAACAACATACGAGAAATTCTTTG
GGTGATCGCCATTTTGATGAGCTTCCTCAACGTGGCAAGGGTGgttcaac
ttttttctttttttttcttatttctatTGCTGAAACGagaataaaagaaa
gaaaaatgtaaaaaaaaaattacaggaAAA
Run BLAST on NCBI

transcript from alignment at sc0000350:218430..219626+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020165 ID=TCONS_00020165|Name=TCONS_00020165|organism=Clytia hemisphaerica|type=transcript|length=1197bp|location=Sequence derived from alignment at sc0000350:218430..219626+ (Clytia hemisphaerica)
GAAAAAGAAAACTTATCTGGCCGGGCTGTACAATTTAAATTTTGCCTTCG
TCCTATGAGTGGAAAAATGACATACAATAGACTACCACttacttcgaata
accgggagttaACTGAAACCTCTTCTCCCATCGAAGAATTAAGGTATTTT
CGGTTTATGTTCAGATTAAACACTGCTAAGGACAAATTGAGGACATTGAT
GGATGGAAATTAGTCTTACAGAATAACATATATCATTATATTTATCTAAA
AAGCGAAATTATAGAAAGCCAAAGTTCTAAAAACACTTGACtttcgaaaa
tttcaaatatttggggGTTCAAATAACGGGGTGTCTACTGCAATTCTAAC
CCTTGCGAGACTCGTGTAAGCGCCTCGAATTGATTTTAgtttacaaattt
tctttttactcaAAACACTacgaaaaaggtttttttcttttaaccaGGGA
ATTTCTCTTTCCCCGTCAAACCAAGTCTCTCGTTTCTTTCATGGTGCTGA
GCGAACATGGCTACCAAATCATCCGCACTGATCACAGCGCGCGGTTCACG
CGGTCGAATACGTAGATNCGAACATGGCTACCAAATCAACCGCACTGATC
ACAGCGCGCGGTTCACGCGGTCGAATACGTAGATGGACTTTAACTGGCAT
TTTAGCTTTGACTTGTCGAAAAGCTTCTCTTGCTAAAGAGTCATTTGCAC
AATTATACTCGAACAATACTTGTCCAGCAATGGCTTTTGCAGCCCAATAG
TTTAATTTTCCTTTGCCTTTTCCCATACGTGTTCCAACAGGCTTTTTAGT
GAAGGGCGTTTCGCTGACTGGTTTGGTCACCTCTCTGGTTTGGGCCTTCC
GTACAATGCTCACCCGCCCGGCTTCGATGGCGGATTCTTTAATATACCCG
GTAGTGAGGGCGTAAATGCCATAACTCATGTTATCTTGGTAGTCGCAATG
GACGAACTCTTTTAGTTTCGGTTGTAAGTTAATCGATCGAGTCTGTGTAA
CGGTGGGTAGCATAGTTCGCTGACTGTTTAAAGTCACGTTTTGAAACAAC
ATACGAGAAATTCTTTGGGTGATCGCCATTTTGATGAGCTTCCTCAACGT
GGCAAGGGTGgttcaacttttttctttttttttcttatttctatTGCTGA
AACGagaataaaagaaagaaaaatgtaaaaaaaaaattacaggaAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011328XLOC_011328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020165-exon-sc0000350-1491911889:218430..218935TCONS_00020165-exon-sc0000350-1491911889:218430..218935Clytia hemisphaericaexon
TCONS_00020165-exon-sc0000350-1510915933:218430..218935TCONS_00020165-exon-sc0000350-1510915933:218430..218935Clytia hemisphaericaexon
TCONS_00020165-exon-sc0000350-1575043694:218430..218935TCONS_00020165-exon-sc0000350-1575043694:218430..218935Clytia hemisphaericaexon
TCONS_00020165-exon-sc0000350-1491911889:219003..219626TCONS_00020165-exon-sc0000350-1491911889:219003..219626Clytia hemisphaericaexon
TCONS_00020165-exon-sc0000350-1510915933:219003..219626TCONS_00020165-exon-sc0000350-1510915933:219003..219626Clytia hemisphaericaexon
TCONS_00020165-exon-sc0000350-1575043694:219003..219626TCONS_00020165-exon-sc0000350-1575043694:219003..219626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:218430..219626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.1372	36.0989	25.166	23.981	46.4411	38.4635	23.7223	24.4804	22.4304	19.9029	18.889	18.9588	9.81209	10.3496	15.202	19.5535	28.8018	28.3946	7.0022	7.9272	11.0243	11.2813	26.3237	23.9321	18.942	20.3381	9.93012	8.90657	14.3657	17.6857
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016180Ribosomal_L10e/L16
IPR020798Ribosomal_L16_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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